CmoCh14G004060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane and coiled-coil domains protein 1
Location	Cmo_Chr14 : 1932866 .. 1933447 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGTCTTGTGATGAAGATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGTGCAATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCTGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

mRNA sequence

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGTCTTGTGATGAAGATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGTGCAATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCTGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Coding sequence (CDS)

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGTCTTGTGATGAAGATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGTGCAATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCTGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Homology

[Close]

BLAST of CmoCh14G004060 vs. Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of CmoCh14G004060 vs. Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of CmoCh14G004060 vs. Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of CmoCh14G004060 vs. Swiss-Prot
Match: TMCO1_PIG (Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of CmoCh14G004060 vs. Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of CmoCh14G004060 vs. TrEMBL
Match: A0A0A0LGX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of CmoCh14G004060 vs. TrEMBL
Match: I1ML54_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G043900 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.8e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of CmoCh14G004060 vs. TrEMBL
Match: A0A0B2SJD2_GLYSO (Transmembrane and coiled-coil domains protein 1 OS=Glycine soja GN=glysoja_015057 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.8e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of CmoCh14G004060 vs. TrEMBL
Match: B7FGM9_MEDTR (Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.0e-86
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of CmoCh14G004060 vs. TrEMBL
Match: I3S6A1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.8e-86
Identity = 166/187 (88.77%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AG FP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGFFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of CmoCh14G004060 vs. TAIR10
Match: AT3G12030.1 (AT3G12030.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 317.0 bits (811), Expect = 8.0e-87
Identity = 164/193 (84.97%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 3   TIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+Y+DSLTVVGIS CTA++CEAISWILIYRT+SYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  D--TSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
           +  +SK+++KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 182
           VVAKLPF P  +V KMSHRGL GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 AAGLFPMPDPKTN 194
           A GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of CmoCh14G004060 vs. TAIR10
Match: AT5G06660.1 (AT5G06660.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 312.8 bits (800), Expect = 1.5e-85
Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MAT-IPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+Y+DSLTVVGIS CTA++CEAISWILIYRT+SYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTD--TSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKTD  +SK+  KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVAKLPF P  +V KMSHRGL GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 AGAAAGLFPMPDPKTN 194
           A  A GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

[Close]

BLAST of CmoCh14G004060 vs. NCBI nr
Match: gi|449437555|ref|XP_004136557.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of CmoCh14G004060 vs. NCBI nr
Match: gi|659084702|ref|XP_008443026.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 184/193 (95.34%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL G+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of CmoCh14G004060 vs. NCBI nr
Match: gi|571523916|ref|XP_006598704.1| (PREDICTED: uncharacterized protein LOC100499752 isoform X1 [Glycine max])

HSP 1 Score: 332.8 bits (852), Expect = 4.0e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of CmoCh14G004060 vs. NCBI nr
Match: gi|357508575|ref|XP_003624576.1| (transmembrane and coiled-coil protein [Medicago truncatula])

HSP 1 Score: 326.6 bits (836), Expect = 2.9e-86
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of CmoCh14G004060 vs. NCBI nr
Match: gi|502107011|ref|XP_004493128.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cicer arietinum])

HSP 1 Score: 325.1 bits (832), Expect = 8.3e-86
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           F+PFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FQPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

The following BLAST results are available for this feature:

BLAST of CmoCh14G004060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMCO1_BOVIN	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1...	[more]
TMCO1_HUMAN	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMC...	[more]
TMCO1_MOUSE	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmc...	[more]
TMCO1_PIG	5.3e-40	46.70	Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1	[more]
TMCO1_PONAB	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMC...	[more]

BLAST of CmoCh14G004060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX0_CUCSA	3.4e-94	95.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1	[more]
I1ML54_SOYBN	2.8e-88	89.30	Uncharacterized protein OS=Glycine max GN=GLYMA_16G043900 PE=4 SV=1	[more]
A0A0B2SJD2_GLYSO	2.8e-88	89.30	Transmembrane and coiled-coil domains protein 1 OS=Glycine soja GN=glysoja_01505...	[more]
B7FGM9_MEDTR	2.0e-86	89.30	Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=...	[more]
I3S6A1_MEDTR	5.8e-86	88.77	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of CmoCh14G004060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12030.1	8.0e-87	84.97	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	1.5e-85	84.69	Protein of unknown function DUF106, transmembrane	[more]

BLAST of CmoCh14G004060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437555\|ref\|XP_004136557.1\|	4.9e-94	95.85	PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sa...	[more]
gi\|659084702\|ref\|XP_008443026.1\|	1.1e-93	95.34	PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucum...	[more]
gi\|571523916\|ref\|XP_006598704.1\|	4.0e-88	89.30	PREDICTED: uncharacterized protein LOC100499752 isoform X1 [Glycine max]	[more]
gi\|357508575\|ref\|XP_003624576.1\|	2.9e-86	89.30	transmembrane and coiled-coil protein [Medicago truncatula]	[more]
gi\|502107011\|ref\|XP_004493128.1\|	8.3e-86	88.77	PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cicer...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002809	EMC3/TMCO1
IPR008559	TMCO1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
biological_process	GO:0006816	calcium ion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005262	calcium channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004060.1	CmoCh14G004060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Protein of unknown function DUF106, transmembrane	PFAM	PF01956	DUF106	coord: 16..173 score: 1.5
IPR002809	Protein of unknown function DUF106, transmembrane	SMART	SM01415	DUF106_2	coord: 14..174 score: 4.4
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PIR	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..193 score: 1.6
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..193 score: 8.8E
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G004060	Cucsa.242510	Cucumber (Gy14) v1	cgycmoB0675
CmoCh14G004060	CmaCh14G004030	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G004060	CmaCh06G001150	Cucurbita maxima (Rimu)	cmacmoB798
CmoCh14G004060	Cla017560	Watermelon (97103) v1	cmowmB214
CmoCh14G004060	Csa3G799650	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G004060	MELO3C009607	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G004060	ClCG10G017690	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G004060	CSPI03G36270	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G004060	Lsi03G017530	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G004060	Cp4.1LG03g03930	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G004060	Cp4.1LG08g13240	Cucurbita pepo (Zucchini)	cmocpeB255
CmoCh14G004060	MELO3C009607.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G004060	CsaV3_3G038630	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G004060	Cla97C10G200590	Watermelon (97103) v2	cmowmbB230
CmoCh14G004060	Bhi11G002096	Wax gourd	cmowgoB0283
CmoCh14G004060	CsGy3G033730	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G004060	Carg03582	Silver-seed gourd	carcmoB0347
CmoCh14G004060	Carg01213	Silver-seed gourd	carcmoB0213

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G004060	CmoCh06G001070	Cucurbita moschata (Rifu)	cmocmoB225

The following block(s) are covering this gene:

None