Cp4.1LG08g05330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal protein S1
LocationCp4.1LG08 : 901992 .. 906468 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTCCTCCACCTTATCCAACCCAAAACCTTATCAGTTCTGTTTACAGAGTCGGGGCCTCAGAAGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCAACGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGATTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTTATTTGCGTGTTCTTTTTGTTTTCTCTCTTGTAATTTTGTGTGGAAGGGATGTTCTGGAGTTGATTTTTTTTTTCTCTTTAATTTGATGTTGTGCGATTGCTTGTAGGAATCTGGAACTGTTTTGATAGTGTTGGATTATAGTTCGTTATGTGATTTTGTGAGATTTCTTGTTAATTACACTGGAATTTGGATATTGTGAACTTGAATGGTTTGTTAATTCGATTTTGTTCTGGGAAATGGACGTGAAAATGCTTATGCGAATTGGATAGTATACTGATAGTGTCATCTTCGGGCATTTGAAGGAGATTGGGTCATAATTTATGTATTTTTCCTCTTCAGGTGAAAGGTACTGTGTTCTGTACGGATGGCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAGTATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGGTATTTCCATCCAATTTGTGGTTCTTTTGTTCATCTTTTTGTTTGAAGTATCGGTTTAGGTTCGAGGTCTAGTCGTGTAATAAGAAACTATAAAGTACTATAACATTCCTGGTATCATTAATTTTAAATCACCACTAAACTCAAAAGTTTGAATTGATGGCTTACTATGAACATAGGACTTCAACTTAGTTTTGATACTATGTTAAATCGCCACTAAACCCGAAATTTTAGGCCGATAGATTGCAATAAATTTGATTTTTGTTTGATACTTAACAATTCATATGTAGCCATTCTTTTGTGTTCAATATTCAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGGTATTTTCTATTAGCTATTAATGACTTTCACATTTTGAATGATTTCCTCGCTTTATGTATATGTAATAGATTATAGTTTCTGTTGGAGTAAAGCATTTAGTTTCTCACAGTTGTTAATTGATGAATGGTTTTATGATTTACAAAGATCATGCTGATTTTCACTCCCTTCCCTTAACAAAGTATTGGATACCAACGATATACTCTTCTATTTTCTAATGTGAACTCCTTTCCCTTTTGGTGTCAAGGACTATAGTAGTTTCCTTGATTTTAGTTATATACTGGCAATTAACATCATACCTCTTTTTTCATTATGTTCGTGCAATTATTCAGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACGGTTCAAAGCCTTAAACCTTATGGTGCCTTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTAGTTTAATGGCCTTCAAGTGATTTATAAGGCTTCTCACCCTCATGTTCCCAAGTCTTACAATGAGTTATTCTGGCATAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGTATTCTCTATGCTAGTTAGAGTTATCCTTTTCTTTCATTTTGTACCAATGCTGATTTTTTTTGTAATACGTGCACGAGAACGTGGTTGTGGTCTTTCTGCTACAGTGTTACCACAATGATAAATTTGCAAATTTTCATATGCCCAAGTTCTTGTGCTATGGTAGGGTAGAGGAAACTACTAACTAATGCTAATTTGCCTTCATCCCTGGTAGCATGTGCTTCTTTCTTGTTTTCCGCACTTTAAAACCATGATTATATCAGACTTCTCTTATAGATTTTTGGTGGTTATCCCTTGAATGTTGAAAACAAAACCTTGCATCATATGGAGTAATGCTTGTAAAGCTCTATTTTTGTATATTTGGATATAAAAGGTAGTAACTATTTTGAAAATAGAGAGATATTAGAGTTCCTGGATCCTTGTGTTTTGTATAGCCTCTTGTAAGAGCGCACTTGATAGGAGTATTTGTAATAGTTTTTGGAGGGGGCCTGTATGAAACCTCCTGTGGCCTCGGTTGGGGTAAAACCTTATCTTCATTTTTTTTTCCATTTCCGAGTTCATTTCCTATCAAATAGTAGACTAAAAAAGAAGGTAAAAAGATGAAAAATAGCTAGAGGTATATTGTAACTATAATTTTGTTTCTATTTACAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCAGACATGCTTAAGTTTCAGCCTGAGGTACTTCACAGCGATCTATCCTTGAGATTTCTAAACCGTACCAAGTTAATGATAAATGCAACTAAATTTTACATGCTGTAGTTCTAAACCATATTGTGGGAAGTTCATCAGTTCCTTTGCCAAAAAAAAGAAAAAAAAAAAGAAAAGAAAAGAAACGTACAGCCTTTCTACTTCATTGGGTACTTGAAATCTCGGATGAAAGTCCAGTTTTGCACTTGTGGACCGCTAGCAGATATTGTCCTCTTTGGACTTTTCCTTTCGAGTTTCCCCTCAAGGGTTTTAAGACGCGTCTGTTAGGAAGAAATTTTCATACCTTTATAAAGAATGTTTTGTTCTTCTCCTCAATCGATGGGGGATCTCACATTGCAAGCTCCCTTTATTAACCAACCACTTGATAAACAATCTACAACAATACTCATTCCTTTTATGTGTCGAATAGAAAGACAATGATGTAGAACTATAGAATAGAAAGGAATGTCATCATTGATTAGGAAATGACAATGGGCTGTACTCTTTTGGATATTCTTATATTTTTTGGTTGATATCATGAGGATTTCTATAAGATATTGTTGGATATTCCTATAATTCAAAAGTGTATTAAGCATAACTGTTGGACTAGTTAAAAGTATCCTCTATAAGATATTAGAAGTGTTCATAACTATACTTTTTCATTTCCAATGAAGTGCTATTAAGTTCTTTTTCGAAGGTTCTTAGGGAAATAGTCCTTCATATTGTGGATTGTTGGGAGAGAAGTCCCACGTCGGCTAATGAAGGAGTTGATCATGGGTTTATAAATAAGAAATATATCTCCATTGGTACGAGGCCTTTAGAGGAAACCAAAAGTAAAGCCATGAGAGCTTATTCTCAAAGTGGACAATATCATATCATTGTAGAGGTCTGTGATTCGTAACACTTCACAAGAAATTAGTGCTCTCTGATGTCATTCAAAATTAAGTACTCACTCATGCTATCAGAAGCCAGCATTGAATTGGTTATTCATTGGTTATTCATTGGTTATTCAGATATCGAATCTTGTTCTCAATCTTCTGTGATCCTTCATTTCTCTTTGCAGCGGACTTTATATCTTTATATCGTTCAATTTGAACCTAAATGGTGACTTGTTTTCTTAACCATACAGAGTGGATTGACTTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGCTGTGTTCTGTACACTGTTTCAAATTGTACACAGAGGTCAGCCCTTGTAATTTGGTACGCAACTTAGCTCTTCATGTCGTAGCTTACTGTTGAATGCTTAATGAAAGCCTTGCCTCTTCATTTTCATTCTCTACTTTTTTGTTTCATTGGTTTCGGCATGGAAAATGAAAATTTGTTTGATCAACGCTCTTATATTCCATTCTAGTTGATGTTGGAAAGAATTCCTCTGAGCTTTATGTATTAATGAATGTATTTTTACTCAACCCGAACACTTTCTTT

mRNA sequence

TAATTTCCTCCACCTTATCCAACCCAAAACCTTATCAGTTCTGTTTACAGAGTCGGGGCCTCAGAAGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCAACGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGATTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGAATCTGGAACTGTTTTGATAGTGTTGGATTATAGTTCGTTATGTGATTTTGTGAAAGGTACTGTGTTCTGTACGGATGGCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAGTATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACGGTTCAAAGCCTTAAACCTTATGGTGCCTTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCAGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACTTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGCTGTGTTCTGTACACTGTTTCAAATTGTACACAGAGGTCAGCCCTTGTAATTTGGTACGCAACTTAGCTCTTCATGTCGTAGCTTACTGTTGAATGCTTAATGAAAGCCTTGCCTCTTCATTTTCATTCTCTACTTTTTTGTTTCATTGGTTTCGGCATGGAAAATGAAAATTTGTTTGATCAACGCTCTTATATTCCATTCTAGTTGATGTTGGAAAGAATTCCTCTGAGCTTTATGTATTAATGAATGTATTTTTACTCAACCCGAACACTTTCTTT

Coding sequence (CDS)

ATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCAACGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGATTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGAATCTGGAACTGTTTTGATAGTGTTGGATTATAGTTCGTTATGTGATTTTGTGAAAGGTACTGTGTTCTGTACGGATGGCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAGTATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACGGTTCAAAGCCTTAAACCTTATGGTGCCTTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCAGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACTTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGA

Protein sequence

MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVKGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE
Homology
[Close]
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 652.1 bits (1681), Expect = 4.1e-186
Identity = 339/431 (78.65%), Postives = 381/431 (88.40%), Query Frame = 1 

Query: 1   MASMAQQF-NGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKL 60
           MAS+AQQ   GLRC PLS+S LSKPFS +H   + R  P+ +AV  S   + Q +ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTL-KPRFSPIVSAVAVS---NAQTRERQKL 60

Query: 61  KEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFV 120
           K++FE+AYERCRNAP+EG+SFT++DFH+A++KYDFNSE+G++                 V
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSR-----------------V 120

Query: 121 KGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADD 180
           KGTVFCTD NGALVDITAKSSAYLPL EACI+RIK+VEEAG+ PG+R+EFVIIGENEADD
Sbjct: 121 KGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADD 180

Query: 181 SLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKS 240
           SL+LSLR IQY+LAWERCRQLQAEDVVVKGK+V ANKGGVVA+VEGLRGFVPFSQIS+KS
Sbjct: 181 SLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKS 240

Query: 241 TAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFID 300
           +AEELL KEIPLKFVEVDEEQSRLV+SNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFID
Sbjct: 241 SAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFID 300

Query: 301 IGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 360
           IGG+NGLLHVSQISHDR+SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI
Sbjct: 301 IGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 360

Query: 361 RNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEG 420
           RNPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP EG
Sbjct: 361 RNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEG 410

Query: 421 LDLNDVPPAEE 431
           LDL+ VPPA E
Sbjct: 421 LDLSVVPPAVE 410

[Close]
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match: RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 1.1e-175
Identity = 325/433 (75.06%), Postives = 377/433 (87.07%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSS-RLSKPFSTRHLQNRARSLP--VQAAVITSPIPSPQVKERF 60
           MAS+AQQF+GLRC+PLSSS RLS+  S    QN++ S+   + AAV  S   S Q KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+                
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTR---------------- 120

Query: 121 FVKGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEA 180
            VKGTVF TD NGALVDI+AKSSAYL +++ACIHRIKHVEEAG+ PG+ +EFVIIGENE+
Sbjct: 121 -VKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENES 180

Query: 181 DDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST 240
           DDSL+LSLR+IQY+LAWERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+
Sbjct: 181 DDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISS 240

Query: 241 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 300
           K+ AEELL KEIPLKFVEVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAF
Sbjct: 241 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 300

Query: 301 IDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 360
           IDIGG+NGLLHVSQISHDR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGD
Sbjct: 301 IDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGD 360

Query: 361 MIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPV 420
           MIRNPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP 
Sbjct: 361 MIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPD 413

Query: 421 EGLDL--NDVPPA 429
           +G+DL  +D+P A
Sbjct: 421 DGVDLTVDDIPSA 413

[Close]
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 290.8 bits (743), Expect = 2.4e-77
Identity = 150/311 (48.23%), Postives = 214/311 (68.81%), Query Frame = 1 

Query: 71  RNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVKGTVFCTDGNG 130
           ++ P   I FT EDF + +++YD++   G                 D V GTVF  +  G
Sbjct: 4   QDIPAVDIGFTHEDFAALLDQYDYHFNPG-----------------DTVVGTVFNLEPRG 63

Query: 131 ALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDSLVLSLRSIQY 190
           AL+DI AK++A+LP+QE  I+R++  EE  + P   +EF I+ +   D  L LS+R I+Y
Sbjct: 64  ALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEY 123

Query: 191 DLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIP 250
             AWER RQLQ ED  V+ +V   N+GG +  +EGLRGF+P S IST+   E+L+ +E+P
Sbjct: 124 MRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELP 183

Query: 251 LKFVEVDEEQSRLVLSNRKAVADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHV 310
           LKF+EVDE+++RLVLS+R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGGV+GLLH+
Sbjct: 184 LKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHI 243

Query: 311 SQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKA 370
           S+ISHD I    +V    D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKA
Sbjct: 244 SEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKA 296

Query: 371 EEMAQTFRQRI 381
           EEMA  +R+++
Sbjct: 304 EEMAAQYREKL 296

[Close]
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.5e-74
Identity = 151/329 (45.90%), Postives = 215/329 (65.35%), Query Frame = 1 

Query: 78  ISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVKGTVFCTDGNGALVDITA 137
           I FT+EDF + ++KYD++   G                 D V GTVF  +  GAL+DI A
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPG-----------------DIVAGTVFSMESRGALIDIGA 69

Query: 138 KSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 197
           K++AY+P+QE  I+R+   EE  + P   +EF I+ +   D  L LS+R I+Y  AWER 
Sbjct: 70  KTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERV 129

Query: 198 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 257
           RQLQAED  V+  V   N+GG +  +EGLRGF+P S IS +   E+L+ +++PLKF+EVD
Sbjct: 130 RQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVD 189

Query: 258 EEQSRLVLSNRKAVADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDR 317
           EE++RLVLS+R+A+ + +   L +  VV+G+V+ +KPYGAFIDIGGV+GLLH+S+ISHD 
Sbjct: 190 EERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDH 249

Query: 318 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 377
           I    +V    D +KVMI+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ F
Sbjct: 250 IDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIF 309

Query: 378 RQRIAYAEAMARADMLKFQPESGLTLTTD 406
           RQ+      +A A  + ++P + +  T D
Sbjct: 310 RQK-----RLAEAQGIPYEPPTSVDDTDD 315

[Close]
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-41
Identity = 98/299 (32.78%), Postives = 168/299 (56.19%), Query Frame = 1 

Query: 83  EDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVKGTVFCTDGNGALVDITAKSSAY 142
           +DF  A+E    +S+ G    G V    +YS+              +GA +DI  K+ A+
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVC---EYST--------------DGAYIDIGGKAPAF 71

Query: 143 LPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQA 202
           LP +EA +H +  +E A +      EF++I +   D  + +SLR++  + AW R  +LQ 
Sbjct: 72  LPKREAALHAVLDLE-AHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQE 131

Query: 203 EDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSR 262
               V+ KV  +NKGGV A +EGLR F+P S ++ K   + L  K + + F+EV+    +
Sbjct: 132 GGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKK 191

Query: 263 LVLSNRKAVADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIA 322
           LVLS R+A   +   ++ +G ++ G V  LKP+G F+D+GG   LL ++QIS   ++D+ 
Sbjct: 192 LVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVG 251

Query: 323 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 381
            + + GD ++ ++++ D  +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct: 252 AIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match: A0A0A0L5E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168960 PE=4 SV=1)

HSP 1 Score: 704.1 bits (1816), Expect = 1.0e-199
Identity = 363/430 (84.42%), Postives = 390/430 (90.70%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRCAPLSSSRLSKPFS++H  N++RSLPVQAAVI+ PIPSPQ +ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTK                 VK
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLPLQEACIHRIKHVEEAGV+PGLR+EFVIIGENE+DDS
Sbjct: 121 GTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST   
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTVML 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
               L  ++ + ++E    QSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 IFHFLPPQLSIGYIE----QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDRISDIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGL 409

Query: 421 DLNDVPPAEE 431
           DLNDVPPAEE
Sbjct: 421 DLNDVPPAEE 409

[Close]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match: D7SYG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 2.9e-186
Identity = 341/430 (79.30%), Postives = 377/430 (87.67%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MA +AQQF GLRC P+SSSRLSKPFS +  Q  +    V A  I++     Q KER KLK
Sbjct: 1   MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNA----QTKERLKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FE+AYERCR AP EG+SF+ +DF+SA++KYDFNSE+GTK                 VK
Sbjct: 61  EMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLP+ EACIH+IKHVEEAG+ PG+R+EFVIIGENEADDS
Sbjct: 121 GTVFCTDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVV ANKGGVVA+VEGLRGFVPFSQIS+K+T
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTT 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KE+P+KFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 AEELLDKELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDR+SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL +DGILGP++ +LP EGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGL 409

Query: 421 DLNDVPPAEE 431
           DL+DVPPAE+
Sbjct: 421 DLSDVPPAED 409

[Close]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match: A0A059B550_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04084 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 8.4e-186
Identity = 337/430 (78.37%), Postives = 380/430 (88.37%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSP--IPSPQVKERFK 60
           MAS+AQQF GLRC PLS SRLS PF+  H + +A + P  +  + S   I + + ++R +
Sbjct: 1   MASLAQQFTGLRCPPLSRSRLSDPFAPPHRRRQAPARPGPSKTVVSAVAISNARTRDRNE 60

Query: 61  LKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDF 120
           LK +F++AYERCR AP+EG++FT+EDFH+A++KYDFNSE+GTK                 
Sbjct: 61  LKHLFDDAYERCRTAPMEGVAFTLEDFHTALDKYDFNSELGTK----------------- 120

Query: 121 VKGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEAD 180
           VKGTVFCTDGNGALVDITAKSSA LP+QEACIHRIKHVEEAG+ PG+++EFVIIGENEAD
Sbjct: 121 VKGTVFCTDGNGALVDITAKSSALLPVQEACIHRIKHVEEAGIVPGMKEEFVIIGENEAD 180

Query: 181 DSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTK 240
           DSL+LSLR+IQYDLAWERCRQLQAEDVVVKGKVV ANKGGVVAVVEGLRGFVPFSQISTK
Sbjct: 181 DSLILSLRTIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTK 240

Query: 241 STAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFI 300
           + AEEL+ KE+PLKFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVVIGTVQSLKPYGAFI
Sbjct: 241 TIAEELIEKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFI 300

Query: 301 DIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 360
           DIGG+NGLLHVSQISHDR+SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM
Sbjct: 301 DIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 360

Query: 361 IRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVE 420
           IRNPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP++ +LP E
Sbjct: 361 IRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSSDLPAE 413

Query: 421 GLDLNDVPPA 429
           GLDL+DVP A
Sbjct: 421 GLDLSDVPAA 413

[Close]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match: M5XQU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006438mg PE=4 SV=1)

HSP 1 Score: 656.0 bits (1691), Expect = 3.2e-185
Identity = 344/429 (80.19%), Postives = 376/429 (87.65%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MAS+AQQF GLRC PLS+SRLSKP         A  LPV +AV  S   + Q KER KLK
Sbjct: 1   MASLAQQFTGLRCPPLSTSRLSKPSVFPKQNKMAGLLPVVSAVAIS---NAQTKERLKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FE+A+ERCR AP+EG+SF ++ F+SA+EKYDFNSE+GTK                 VK
Sbjct: 61  ELFEDAHERCRTAPMEGVSFNLDSFYSALEKYDFNSEIGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVF  D  GALVDITAKSSAYLP+QEACIH+IK VEE G+ PG+R+EFVIIGENEADDS
Sbjct: 121 GTVFNIDNYGALVDITAKSSAYLPVQEACIHKIKSVEEVGIVPGVREEFVIIGENEADDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSL+SIQYDLAWERCRQLQAEDVVVKGKVV ANKGGVVAVVEGLRGFVPFSQISTKST
Sbjct: 181 LILSLKSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTKST 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KEIPLKFVEVDEEQSRLVLSNRKA+AD+QAQLGIGSVV+GTVQSLKPYGAFIDI
Sbjct: 241 AEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADNQAQLGIGSVVLGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDR+SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPVEGL 409

Query: 421 DLNDVPPAE 430
           DL+DVPPAE
Sbjct: 421 DLSDVPPAE 409

[Close]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match: A0A0J8CTT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 9.3e-185
Identity = 341/433 (78.75%), Postives = 381/433 (87.99%), Query Frame = 1 

Query: 1   MASMAQQFNG---LRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERF 60
           MAS+AQQ  G   LRC PLS+S LSKPFS++H   + R+ P+ +AV  S   + Q +ER 
Sbjct: 1   MASLAQQLAGGLSLRCPPLSNSHLSKPFSSKHAL-KPRASPIVSAVAVS---NAQTRERA 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCD 120
           KLK++FE+AYERCR AP +G++FT+EDFH+A++KYDFNSE+GT+                
Sbjct: 61  KLKQLFEDAYERCRIAPTQGVAFTLEDFHTALDKYDFNSELGTR---------------- 120

Query: 121 FVKGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEA 180
            VKGTVFCTD NGALVDITAKSSAYLPLQEACIHRIKHVEEAG+ PGLR EFVIIGENEA
Sbjct: 121 -VKGTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIVPGLRDEFVIIGENEA 180

Query: 181 DDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST 240
           DDSL+LSLRSIQY+LAWERCRQLQAEDVVVKGK+V ANKGGVVA+VEGLRGFVPFSQ+ST
Sbjct: 181 DDSLILSLRSIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQVST 240

Query: 241 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 300
           KSTAEELL KE+PLKFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV G+VQSLKPYGAF
Sbjct: 241 KSTAEELLEKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAF 300

Query: 301 IDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 360
           IDIGG+NGLLHVSQISHDR+SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGD
Sbjct: 301 IDIGGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGD 360

Query: 361 MIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPV 420
           MIRNPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP 
Sbjct: 361 MIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPVTSDLPP 412

Query: 421 EGLDLNDVPPAEE 431
           EGLDL+ VP AE+
Sbjct: 421 EGLDLSAVPAAEQ 412

[Close]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match: AT5G30510.1 (AT5G30510.1 ribosomal protein S1)

HSP 1 Score: 617.5 bits (1591), Expect = 6.4e-177
Identity = 325/433 (75.06%), Postives = 377/433 (87.07%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSS-RLSKPFSTRHLQNRARSLP--VQAAVITSPIPSPQVKERF 60
           MAS+AQQF+GLRC+PLSSS RLS+  S    QN++ S+   + AAV  S   S Q KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+                
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTR---------------- 120

Query: 121 FVKGTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEA 180
            VKGTVF TD NGALVDI+AKSSAYL +++ACIHRIKHVEEAG+ PG+ +EFVIIGENE+
Sbjct: 121 -VKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENES 180

Query: 181 DDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST 240
           DDSL+LSLR+IQY+LAWERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+
Sbjct: 181 DDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISS 240

Query: 241 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 300
           K+ AEELL KEIPLKFVEVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAF
Sbjct: 241 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 300

Query: 301 IDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 360
           IDIGG+NGLLHVSQISHDR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGD
Sbjct: 301 IDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGD 360

Query: 361 MIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPV 420
           MIRNPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP 
Sbjct: 361 MIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPD 413

Query: 421 EGLDL--NDVPPA 429
           +G+DL  +D+P A
Sbjct: 421 DGVDLTVDDIPSA 413

[Close]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match: AT1G71720.1 (AT1G71720.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-22
Identity = 65/205 (31.71%), Postives = 122/205 (59.51%), Query Frame = 1 

Query: 182 VLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVP----FSQIST 241
           +LS R     +AW R RQ++  +  ++ K+ + N GG++  +EGLR F+P      +++T
Sbjct: 261 LLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNT 320

Query: 242 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 301
            +  +E + +   ++   ++E+++ L+LS +  VA  +  L  G+++ GTV  + PYGA 
Sbjct: 321 FTELKENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGTVVKILPYGAQ 380

Query: 302 IDIG--GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 361
           + +G    +GLLH+S I+  RI  ++ VLQ  +++KV+++       ++SLS   LE  P
Sbjct: 381 VKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEP 440

Query: 362 GDMIRNPKLVFEKAEEMAQTFRQRI 381
           G  I + + VF +AEEMA+ +R+++
Sbjct: 441 GLFISDREKVFTEAEEMAKKYREKM 462

[Close]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match: AT3G23700.1 (AT3G23700.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-20
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 1 

Query: 194 WERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEE---------- 253
           W+  +         +G+V   N GG++     L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 254 -LLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIG 313
            L+  ++P+K V+ DEE  +L+LS + A+    +Q + +G V  G V S++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 314 ------GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 356
                  + GL+HVS++S D + D+  VL+ GD ++V++ + D+E+ R++LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match: AT5G14580.1 (AT5G14580.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-11
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1 

Query: 254 VEVDEEQSRLVLSNRKAVADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGVN 313
           + +D     +V  N+  +  +Q Q        L +G V  GTV S+K YGAF++  GG  
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702

Query: 314 GLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 356
           GLLH+S++SH+ +S ++ VL  G  +  M +  D  RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

[Close]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match: AT3G11964.1 (AT3G11964.1 RNA binding;RNA binding)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-09
Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = 1 

Query: 277  QLGIGSVVIGTVQSLKPYGAFIDIG--GVNGLLHVSQISHDRISDIATVLQPGDTLKVMI 336
            +L +G ++ G ++ ++P+G FIDI   G+ GL H+SQ+S DR+ ++    + G++++  I
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI 1490

Query: 337  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKF 396
            L  D E+ R+SL  K      GD  +   L  +               +E +A  D   F
Sbjct: 1491 LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF 1550

Query: 397  QPESGLTLTTDGILGPMTPELPVEGLDLNDV 426
            Q  SG T      +       P+E +DL+D+
Sbjct: 1551 QETSGGTSLVLAQVESRASIPPLE-VDLDDI 1578

[Close]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match: gi|659076992|ref|XP_008438974.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 746.1 bits (1925), Expect = 3.4e-212
Identity = 382/430 (88.84%), Postives = 404/430 (93.95%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRC PLSSSRLSKPFS++HL N++RSLPVQAAVI+ PIPSPQ KERFKLK
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTK                 VK
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLPLQEACIHRIKHVEEAG++PGLR+EFVIIGENE+DDS
Sbjct: 121 GTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KE+PLKFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 AEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGL 413

Query: 421 DLNDVPPAEE 431
           DLNDVPPAEE
Sbjct: 421 DLNDVPPAEE 413

[Close]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match: gi|449459770|ref|XP_004147619.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus])

HSP 1 Score: 742.3 bits (1915), Expect = 4.9e-211
Identity = 380/430 (88.37%), Postives = 403/430 (93.72%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRCAPLSSSRLSKPFS++H  N++RSLPVQAAVI+ PIPSPQ +ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTK                 VK
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLPLQEACIHRIKHVEEAGV+PGLR+EFVIIGENE+DDS
Sbjct: 121 GTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKS 
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSN 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KE+PLKFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 AEELLSKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDRISDIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGL 413

Query: 421 DLNDVPPAEE 431
           DLNDVPPAEE
Sbjct: 421 DLNDVPPAEE 413

[Close]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match: gi|700202052|gb|KGN57185.1| (hypothetical protein Csa_3G168960 [Cucumis sativus])

HSP 1 Score: 704.1 bits (1816), Expect = 1.5e-199
Identity = 363/430 (84.42%), Postives = 390/430 (90.70%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRCAPLSSSRLSKPFS++H  N++RSLPVQAAVI+ PIPSPQ +ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTK                 VK
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLPLQEACIHRIKHVEEAGV+PGLR+EFVIIGENE+DDS
Sbjct: 121 GTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST   
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTVML 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
               L  ++ + ++E    QSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 IFHFLPPQLSIGYIE----QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDRISDIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGL 409

Query: 421 DLNDVPPAEE 431
           DLNDVPPAEE
Sbjct: 421 DLNDVPPAEE 409

[Close]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match: gi|720047604|ref|XP_010270863.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 662.5 bits (1708), Expect = 4.9e-187
Identity = 344/430 (80.00%), Postives = 377/430 (87.67%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MAS+AQQF GLRC PL SSR SKP S +  Q    S  V A  I++     Q KER KLK
Sbjct: 1   MASLAQQFGGLRCPPLPSSRFSKPISQKP-QKATFSRVVSAVAISNA----QTKERQKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           ++FEEAYERCR AP EG+SFT+EDFH+A++KYDFNSE+GTK                 VK
Sbjct: 61  DMFEEAYERCRTAPTEGVSFTLEDFHNALDKYDFNSEIGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLP+QE CIH+IKHVEEAG+ PGLR+EFVIIGENEADDS
Sbjct: 121 GTVFCTDTNGALVDITAKSSAYLPVQETCIHKIKHVEEAGIVPGLREEFVIIGENEADDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQY+LAWERCRQLQAEDVVVKGK+V  N+GGVVA+VEGLRGFVPFSQISTKST
Sbjct: 181 LILSLRSIQYELAWERCRQLQAEDVVVKGKIVGGNRGGVVAIVEGLRGFVPFSQISTKST 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KE+PLKFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 AEELLDKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLH+SQISHDR+SDI+TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHISQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL++DGILGP+T ELPVEGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTQELPVEGL 408

Query: 421 DLNDVPPAEE 431
           DL+DVP AE+
Sbjct: 421 DLSDVPSAED 408

[Close]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match: gi|225432062|ref|XP_002280604.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera])

HSP 1 Score: 659.4 bits (1700), Expect = 4.2e-186
Identity = 341/430 (79.30%), Postives = 377/430 (87.67%), Query Frame = 1 

Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MA +AQQF GLRC P+SSSRLSKPFS +  Q  +    V A  I++     Q KER KLK
Sbjct: 1   MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNA----QTKERLKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKESGTVLIVLDYSSLCDFVK 120
           E+FE+AYERCR AP EG+SF+ +DF+SA++KYDFNSE+GTK                 VK
Sbjct: 61  EMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTK-----------------VK 120

Query: 121 GTVFCTDGNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDS 180
           GTVFCTD NGALVDITAKSSAYLP+ EACIH+IKHVEEAG+ PG+R+EFVIIGENEADDS
Sbjct: 121 GTVFCTDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDS 180

Query: 181 LVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKST 240
           L+LSLRSIQYDLAWERCRQLQAEDVVVKGKVV ANKGGVVA+VEGLRGFVPFSQIS+K+T
Sbjct: 181 LILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTT 240

Query: 241 AEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDI 300
           AEELL KE+P+KFVEVDEEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDI
Sbjct: 241 AEELLDKELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI 300

Query: 301 GGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360
           GG+NGLLHVSQISHDR+SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIR
Sbjct: 301 GGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIR 360

Query: 361 NPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGL 420
           NPKLVFEKAEEMAQTFRQRIA AEAMARADML+FQPESGLTL +DGILGP++ +LP EGL
Sbjct: 361 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGL 409

Query: 421 DLNDVPPAEE 431
           DL+DVPPAE+
Sbjct: 421 DLSDVPPAED 409

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR1_SPIOL4.1e-18678.6530S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1[more]
RPS1_ARATH1.1e-17575.0630S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=... [more]
RS1_SYNP62.4e-7748.2330S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
RS1A_SYNY31.5e-7445.9030S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
RS1_SYNE73.7e-4132.7830S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE... [more]
BLAST of Cp4.1LG08g05330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5E7_CUCSA1.0e-19984.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168960 PE=4 SV=1[more]
D7SYG9_VITVI2.9e-18679.30Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=... [more]
A0A059B550_EUCGR8.4e-18678.37Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04084 PE=4 SV=1[more]
M5XQU6_PRUPE3.2e-18580.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006438mg PE=4 SV=1[more]
A0A0J8CTT9_BETVU9.3e-18578.75Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 S... [more]
BLAST of Cp4.1LG08g05330 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G30510.16.4e-17775.06 ribosomal protein S1[more]
AT1G71720.13.1e-2231.71 Nucleic acid-binding proteins superfamily[more]
AT3G23700.14.9e-2031.67 Nucleic acid-binding proteins superfamily[more]
AT5G14580.14.2e-1136.04 polyribonucleotide nucleotidyltransferase, putative[more]
AT3G11964.13.0e-0928.48 RNA binding;RNA binding[more]
BLAST of Cp4.1LG08g05330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076992|ref|XP_008438974.1|3.4e-21288.84PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo][more]
gi|449459770|ref|XP_004147619.1|4.9e-21188.37PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus][more]
gi|700202052|gb|KGN57185.1|1.5e-19984.42hypothetical protein Csa_3G168960 [Cucumis sativus][more]
gi|720047604|ref|XP_010270863.1|4.9e-18780.00PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera][more]
gi|225432062|ref|XP_002280604.1|4.2e-18679.30PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009735 response to cytokinin
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0009902 chloroplast relocation
biological_process GO:0008150 biological_process
cellular_component GO:0009579 thylakoid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05330.1Cp4.1LG08g05330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003029S1 domainPFAMPF00575S1coord: 202..266
score: 1.0E-7coord: 279..349
score: 1.0
IPR003029S1 domainPROFILEPS50126S1coord: 204..268
score: 14.329coord: 281..349
score: 21.866coord: 116..186
score: 11
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 193..269
score: 3.6E-10coord: 275..351
score: 1.1E-23coord: 117..186
score: 2.
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 117..212
score: 4.33E-11coord: 280..359
score: 1.79E-21coord: 199..272
score: 7.0
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 202..268
score: 7.5E-7coord: 114..186
score: 4.9E-4coord: 279..349
score: 2.0
NoneNo IPR availablePANTHERPTHR10724S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 40..101
score: 2.1E-209coord: 119..430
score: 2.1E
NoneNo IPR availablePANTHERPTHR10724:SF7RIBOSOMAL PROTEIN S1-RELATEDcoord: 119..430
score: 2.1E-209coord: 40..101
score: 2.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05330Cucsa.252380Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g05330CmaCh17G003890Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g05330CmaCh06G015760Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05330CmoCh17G003780Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g05330CmoCh06G015700Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05330Cla021812Watermelon (97103) v1cpewmB845
Cp4.1LG08g05330Cla009223Watermelon (97103) v1cpewmB853
Cp4.1LG08g05330Csa3G168960Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g05330MELO3C006733Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g05330ClCG05G006720Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g05330ClCG06G004350Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g05330CSPI03G15150Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g05330Lsi09G015120Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g05330Lsi05G014050Bottle gourd (USVL1VR-Ls)cpelsiB715
Cp4.1LG08g05330MELO3C006733.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g05330CsaV3_3G015350Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g05330Bhi01G000802Wax gourdcpewgoB1110
Cp4.1LG08g05330Bhi12G001758Wax gourdcpewgoB1102
Cp4.1LG08g05330CsGy3G015300Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g05330Carg05566Silver-seed gourdcarcpeB0109
Cp4.1LG08g05330Carg25648Silver-seed gourdcarcpeB1043
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g05330Cp4.1LG12g03330Cucurbita pepo (Zucchini)cpecpeB194
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05330Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g05330Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g05330Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05330Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g05330Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05330Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g05330Melon (DHL92) v3.5.1cpemeB793
Cp4.1LG08g05330Silver-seed gourdcarcpeB0396