Cla009223 (gene) Watermelon (97103) v1

Overview
NameCla009223
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain
LocationChr6 : 4692375 .. 4696281 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAGATTTCCAGAACAATTCTCATTTATTGTTATCTGAACGAACACCTTCACAGCTTTACAAAATCACTTCATCTTTATTTTTTTGTAAAAGCGACTAGGAAATAATGGAATTGCGTGTTTTGTTCTTTTTGAAGGGTAATGCTTGCCATGTAGGAGGTTCTGGTTATTGAGCACATTCTTTTGTTGAATTTTGGGCATAGAACGAAAAAAGTAGTCCTACGTGAGTGGATTTGCGAAGAATTTTATTTCTGGAACATTTTCTTTCTTTTGGTGGTTGGGATAGTTGGAATTTGCAGCGGTTAGAATTTGAATTTGCATTGGTATTGCTTCATCAAGTAAACTCACAATGTAGCATCGTGAGTTTGAGAAACAGAAAACTATTCAATCAAAGAAAGAACAGCCTAGGGGCAGAGAGGCGAGAAGCCCCTCCCCTTAAAGAACTAGCGTATCAGAGCCTTCCAATTATGGAGGATTTGAGTAAGACTGTAATTACAAAAAAGATCCTTTTCCGCAAGAGTCCATAAAGAACTAATTTGTTCAATATTGGAAAAATCAACAAAAGGGCAAGACTTATCTTCAAAGCTTGAGAGGGGATGTTAGATCATATTATTCAAATTCGATTTAGTTTAAATTTGCAATTTGAATTAGGTTTGTTTAGTATGTGAATTGTGTTATTAGATTTATTTTTTAGAACCATAAATAGGTTTTTAGCGTTGTATTTCATAATGCACTCTTTATTCAATGGAACTCTAGCTGTCGTTTGTGTTATCTTCCTCTTTTCTCTTCCCTAAATTTAGAAGTAATAATATCTAGATACATCAAATGCCACGAATGGTTCCCAATCTCAAGAAACATTGGGCCTTACGCGTATGAAGTTCGAGGTTTTCAATAGTTCCACCAAGCACGAGCTGACTACAGAAAGAATTGAGCTACACGTTCCTGAAAATTTGTGACTTACAGCTGCAACTATTTAACTACCCAGAGTTTTTATAGCCACCCCAAAAGAACCAGCTTAACAGAAATCTGTGGCATTACTTTTTGGCTCCAATATCAGATAGCTAACAGAAATCTGTGCCATTTCTTTCTTTAATATTTGCACATGCATCTCGTGGGCTAATGGATAGTGGTTAACTTCTCAATAAGTTCAAATTATTGTTTTCTCAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTGGGTTCTGCAAGATATATCATGCTTTTATAATTTTGTTTGTTCCTTATATCGTTGCGCAAGATCCTTCAATCTTGTTATGCTAGTAGTATTCATGTGACCATTGCCTTTCATCCTTTTGTTGCCTTCTTAGCTTCATAACCTAGTTGCAGGGCAGAGGCACTCCCACATTATTGTTTTATCATCTTTTTTACTCATTACAAATGTGTTTTTATTTAATATTGATCATCTTTGTCATTCACTGAATAATTTAAGATTTCACACTTGTTTTTACCTGTTGCTACTTTTACTATCTCATTTTTATTTTCCTTTTCTAAGAGAAAGATCTTGAAATGCAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAGTTAGTTCACTTGACTGACATTCTTTTTGCTGACTTTTGATGCTCTAGCTGACTTAACTTTTAAAACTTCTATTATTATTTACTTTGCGGTCATACTGATAGCCTACACATTTATATGTTTTTGTGATTATATGATTATCTTGACCATCACAGACCACTACTTTTGCTCATATTCTTCATCAGTTTTAAGCTCACATACTGTGCCATATATCTCTTTTTCTTGTCAATTTATCAGAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTATTTCATTGTCATTTGTCAATGAGAGCTTGAAGGAGGTCTTCATCATTGTGCAGCCTTGAACATGTTGAAATTAATTTTTGAGGTTGCAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGTATTTCTTTTGCCCTTTACTCTTCTTACTATTATGACGTGCATTGCTTGTATTTTCAGAAGGTGTTTGCACTTTTCAATTCTTATTGTTAGTGTGCATATTAGGTTGCCTAGTCTTTTCCCCCCCTTATATTTAACCGCTAGCATGACTTGAACCTTTATGTAATATTGTGTAGGAGAGCTCCAAAATTTATGGTTTCACTTCCATCCATTCAATTTCACCTCATATAAATTATTGAACTAGAGTAGATTTTTAATTTTTTTTAATTTCTTGTATCTATTCTAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGGTACTTATTTATTTGGCTTGGATTTTTCAACTTAATTCATTGAAAATGTTGGAGCGTGATTAACTCTATATCAATGCCAGAGTGGATAATGGGATTGACTCAGCTTTGATGGGGTATCGAGTGGGCTTACACTTTAGTTGCCTTTAGAGGTTGTAGATGTCACTGATAGTTTCCCCCACAGAATAATAACGGAGAGGTATTATACCTTGCTTCTCTCAAATTAATAACTCTACAGTTAATTTCAAAATTGTTCTTATAAAATGTGCGTTATATAAATCAACACGCCAACATGAGCATAACTCAACTGACATGAATTTGTACTATCAATTTCAAGGTATAAGACACATATTGTTAAGGAAAAAAAAACCGACACTTTGCTGGGCTTTTGCCTTGCCTGATTCATTACTATATTTATTTAATGGCTAGATACCATGAAGAAAATTCACAATAAATAACGAGGTTCGGATGATCATTATTGTCATCAAGTATCATTTTCCTAATTCACAATTCAATTCAATCATTCACTTCAATGCTCGCTGTATGGTGCTAGAAGTATTTTTACAAATGATTCAGTGCTCGCTATATGGTGCTAGAAGTTATGTTACAAATGAGAGTCGAGACTAG

mRNA sequence

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGTGCTCGCTATATGGTGCTAGAAGTTATGTTACAAATGAGAGTCGAGACTAG

Coding sequence (CDS)

ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGTGCTCGCTATATGGTGCTAGAAGTTATGTTACAAATGAGAGTCGAGACTAG

Protein sequence

MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSLYGARSYVTNESRD
Homology
[Close]
BLAST of Cla009223 vs. Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 5.7e-145
Identity = 268/377 (71.09%), Postives = 306/377 (81.17%), Query Frame = 1 

Query: 18  PPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEA 77
           PPLS+S  S        FSP    +P+  P+VSA A     +SNAQT+ R KLKQLF++A
Sbjct: 15  PPLSNSNLSKP------FSPKHTLKPRFSPIVSAVA-----VSNAQTRERQKLKQLFEDA 74

Query: 78  YERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYL 137
           YERC  APM+G+SFT++DFH AL  YDF +E+G++VKGTVFCTDANGALVD TAK +AYL
Sbjct: 75  YERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYL 134

Query: 138 PTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAE 197
           P  EACI +I++VEE GI PG+ EEFVII E E  D LILSL+ +QY LAWERCRQLQAE
Sbjct: 135 PLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAE 194

Query: 198 DIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRL 257
           D+V+KGK+VGA KGG+V LVEGLRGFVPFSQIS+KS+ EELL KE+ LKFVEVDE+ SRL
Sbjct: 195 DVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRL 254

Query: 258 VLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATV 317
           V+SN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGLLHVSQIS + +SDIATV
Sbjct: 255 VMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATV 314

Query: 318 LQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQA 377
           LQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVFEKA+EMAQ FRQRIAQA
Sbjct: 315 LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 374

Query: 378 ETMARAGLLGFQLECSL 393
           E MARA +L FQ E  L
Sbjct: 375 EAMARADMLRFQPESGL 380

[Close]
BLAST of Cla009223 vs. Swiss-Prot
Match: RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.5e-137
Identity = 258/392 (65.82%), Postives = 308/392 (78.57%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL      P  SSSR S  +     F  N+   V P + AA +    +S+ 
Sbjct: 1   MASLAQQFSGLRCS---PLSSSSRLSRRASK--NFPQNKSASVSPTIVAAVA----MSSG 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK RL+LK++F++AYERC T+PM+G++FT++DF AA+  YDF +E+GT+VKGTVF TDA
Sbjct: 61  QTKERLELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDA 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSV 180
           NGALVD +AK +AYL  ++ACI +I+HVEE GI PG+ EEFVII E E  D L+LSL+++
Sbjct: 121 NGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+++K KV+GA KGGLV LVEGLRGFVPFSQIS+K+  EELL KE
Sbjct: 181 QYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           + LKFVEVDE+ ++LVLSN KA+  SQA+L IGSVV G VQ LKPYGAFIDIGGINGLLH
Sbjct: 241 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + +SDIATVLQPGD LKVMILS+D ++GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           A+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 AEEMAQTFRQRIAQAEAMARADMLRFQPESGL 383

[Close]
BLAST of Cla009223 vs. Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 272.3 bits (695), Expect = 8.4e-72
Identity = 140/293 (47.78%), Postives = 194/293 (66.21%), Query Frame = 1 

Query: 83  PMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACI 142
           P   I FT EDF A L  YD+    G  V GTVF  +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 143 LKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGK 202
            ++   EEV + P    EF I++++ +   L LS++ ++Y  AWER RQLQ ED  ++ +
Sbjct: 67  NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 126

Query: 203 VVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKA 262
           V    +GG +V +EGLRGF+P S IS +   E+L+ +EL LKF+EVDE  +RLVLS+ +A
Sbjct: 127 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 186

Query: 263 IVSSQAE-LRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDM 322
           +V  +   L +G VV G V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D 
Sbjct: 187 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 246

Query: 323 LKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQ 375
           +KVMI+  D  +GR+SLSTK+LEP PGDM+ NP++V+EKA+EMA  +R+++ Q
Sbjct: 247 VKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298

[Close]
BLAST of Cla009223 vs. Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 5.5e-71
Identity = 143/292 (48.97%), Postives = 196/292 (67.12%), Query Frame = 1 

Query: 87  ISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIR 146
           I FTLEDF A L  YD+    G  V GTVF  ++ GAL+D  AK  AY+P QE  I ++ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 147 HVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKVVGA 206
             EEV + P    EF I+ ++ +   L LS++ ++Y  AWER RQLQAED  ++  V   
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 207 TKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSS 266
            +GG +V +EGLRGF+P S ISA+   E+L+ ++L LKF+EVDE+ +RLVLS+ +A+V  
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 267 QAE-LRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVM 326
           +   L +  VV G+V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 327 ILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQ-RIAQAE 377
           I+  D  +GR+SLSTK+LEP PG M+ +  LV E ADEMA+IFRQ R+A+A+
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQ 300

[Close]
BLAST of Cla009223 vs. Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-40
Identity = 93/262 (35.50%), Postives = 151/262 (57.63%), Query Frame = 1 

Query: 88  SFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRH 147
           SFT  +F A L  Y +   LG  V GT+F  + NG LVD     +AYLP QE     +  
Sbjct: 7   SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE-----VSS 66

Query: 148 VEEVGIYPGLE----EEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKV 207
            +E+  +  L      EF ++    +   LILS++ ++Y  AW+R RQL AED ++  ++
Sbjct: 67  NQELNNFNSLNINDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRI 126

Query: 208 VGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAI 267
            G  KGG++V +EG+ GFVP S ++  S      NK ++LK + V+EK + L+LS+ +A+
Sbjct: 127 KGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRAL 186

Query: 268 VS-SQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDML 327
           ++ + + L +G+++ G +  + PYG FI  G + GL+H+S+I+   +  I +  + GD +
Sbjct: 187 IAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTI 246

Query: 328 KVMILSYDCNKGRVSLSTKKLE 345
           K +I+  D  +GR+SLS K L+
Sbjct: 247 KAVIIHVDKKQGRLSLSMKHLK 263

[Close]
BLAST of Cla009223 vs. TrEMBL
Match: D7SYG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 4.0e-145
Identity = 279/394 (70.81%), Postives = 318/394 (80.71%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPIS 60
           M+  A Q  GL      PP+SSSR S        FSP Q  +P  + +VSA A     IS
Sbjct: 1   MACLAQQFTGLRC----PPISSSRLSKP------FSPKQPQKPSFVRIVSAVA-----IS 60

Query: 61  NAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCT 120
           NAQTK RLKLK++F++AYERC TAP +G+SF+ +DF++AL  YDF +E+GTKVKGTVFCT
Sbjct: 61  NAQTKERLKLKEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCT 120

Query: 121 DANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLK 180
           D NGALVD TAK +AYLP  EACI KI+HVEE GI PG+ EEFVII E E  D LILSL+
Sbjct: 121 DTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+K+T EELL+
Sbjct: 181 SIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLD 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL +KFVEVDE+ SRLVLSN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGL
Sbjct: 241 KELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQIS + +SDIATVLQPGD+LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVF
Sbjct: 301 LHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           EKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 EKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. TrEMBL
Match: A0A0D2RGN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G069200 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 6.8e-145
Identity = 283/396 (71.46%), Postives = 315/396 (79.55%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKV----LPLVSAAASSPSP 60
           M+S A Q  GL      PPLSSSRFS          P Q  KV     P+VSA A     
Sbjct: 1   MASLAQQFTGLRC----PPLSSSRFSVK--------PKQTQKVGAFASPIVSAVA----- 60

Query: 61  ISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVF 120
           +SNAQTK RL+LK++F++AYERC TAPM+G++FT+EDF  AL  YDF +ELGTKVKGTVF
Sbjct: 61  VSNAQTKDRLELKKMFEDAYERCRTAPMEGVAFTVEDFQNALEKYDFDSELGTKVKGTVF 120

Query: 121 CTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILS 180
           CTD NGALVD TAK +AYLP QEA I KI+HVEEVGI PGL EEF+II E E  D LILS
Sbjct: 121 CTDGNGALVDITAKSSAYLPVQEASIHKIKHVEEVGIVPGLREEFMIIGENEADDSLILS 180

Query: 181 LKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEEL 240
           L+S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+KST EEL
Sbjct: 181 LRSIQYELAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKSTAEEL 240

Query: 241 LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGIN 300
           L+KEL LKFVEVDE+ SRLV SN KA+  SQA+L IGSVV GTVQ LKPYGAFIDIGGIN
Sbjct: 241 LDKELPLKFVEVDEEQSRLVFSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGIN 300

Query: 301 GLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKL 360
           GLLHVSQIS + +SDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NP L
Sbjct: 301 GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTL 360

Query: 361 VFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           VFEKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 VFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. TrEMBL
Match: A0A0B0NJL9_GOSAR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gossypium arboreum GN=F383_18433 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.5e-144
Identity = 282/396 (71.21%), Postives = 315/396 (79.55%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKV----LPLVSAAASSPSP 60
           M+S A Q  GL      PPLSSSRFS          P Q  KV     P+VSA A     
Sbjct: 1   MASLAQQFTGLRC----PPLSSSRFSVK--------PKQTQKVGAFASPIVSAVA----- 60

Query: 61  ISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVF 120
           +SNAQTK RL+LK++F++AYERC TAPM+G++FT+EDF  AL  YDF +ELGTKVKGTVF
Sbjct: 61  VSNAQTKDRLELKKMFEDAYERCRTAPMEGVAFTVEDFQNALEKYDFDSELGTKVKGTVF 120

Query: 121 CTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILS 180
           CTD NGALVD TAK +AYLP QEA I KI+HVEEVGI PGL EEF+II E E  D LILS
Sbjct: 121 CTDGNGALVDITAKSSAYLPVQEASIHKIKHVEEVGIVPGLREEFMIIGENEADDSLILS 180

Query: 181 LKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEEL 240
           L+S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+K+T EEL
Sbjct: 181 LRSIQYELAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKATAEEL 240

Query: 241 LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGIN 300
           L+KEL LKFVEVDE+ SRLV SN KA+  SQA+L IGSVV GTVQ LKPYGAFIDIGGIN
Sbjct: 241 LDKELPLKFVEVDEEQSRLVFSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGIN 300

Query: 301 GLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKL 360
           GLLHVSQIS + +SDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NP L
Sbjct: 301 GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTL 360

Query: 361 VFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           VFEKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 VFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. TrEMBL
Match: A0A0D2N8P2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G069200 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 5.7e-144
Identity = 282/396 (71.21%), Postives = 314/396 (79.29%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKV----LPLVSAAASSPSP 60
           M+S A Q  GL      PPLSSSRFS          P Q  KV     P+VSA A     
Sbjct: 1   MASLAQQFTGLRC----PPLSSSRFSVK--------PKQTQKVGAFASPIVSAVA----- 60

Query: 61  ISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVF 120
           +SNAQTK RL+LK++F++AYERC TAPM+G++FT+EDF  AL  YDF +ELGTKV GTVF
Sbjct: 61  VSNAQTKDRLELKKMFEDAYERCRTAPMEGVAFTVEDFQNALEKYDFDSELGTKVWGTVF 120

Query: 121 CTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILS 180
           CTD NGALVD TAK +AYLP QEA I KI+HVEEVGI PGL EEF+II E E  D LILS
Sbjct: 121 CTDGNGALVDITAKSSAYLPVQEASIHKIKHVEEVGIVPGLREEFMIIGENEADDSLILS 180

Query: 181 LKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEEL 240
           L+S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+KST EEL
Sbjct: 181 LRSIQYELAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKSTAEEL 240

Query: 241 LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGIN 300
           L+KEL LKFVEVDE+ SRLV SN KA+  SQA+L IGSVV GTVQ LKPYGAFIDIGGIN
Sbjct: 241 LDKELPLKFVEVDEEQSRLVFSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGIN 300

Query: 301 GLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKL 360
           GLLHVSQIS + +SDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NP L
Sbjct: 301 GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTL 360

Query: 361 VFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           VFEKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 VFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. TrEMBL
Match: A0A0J8CTT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 9.8e-144
Identity = 278/394 (70.56%), Postives = 313/394 (79.44%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPIS 60
           M+S A Q  G  S    PPLS+S  S        FS     +P+  P+VSA A     +S
Sbjct: 1   MASLAQQLAGGLS-LRCPPLSNSHLSKP------FSSKHALKPRASPIVSAVA-----VS 60

Query: 61  NAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCT 120
           NAQT+ R KLKQLF++AYERC  AP  G++FTLEDFH AL  YDF +ELGT+VKGTVFCT
Sbjct: 61  NAQTRERAKLKQLFEDAYERCRIAPTQGVAFTLEDFHTALDKYDFNSELGTRVKGTVFCT 120

Query: 121 DANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLK 180
           D NGALVD TAK +AYLP QEACI +I+HVEE GI PGL +EFVII E E  D LILSL+
Sbjct: 121 DNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIVPGLRDEFVIIGENEADDSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           S+QY LAWERCRQLQAED+V+KGK+VGA KGG+V LVEGLRGFVPFSQ+S KST EELL 
Sbjct: 181 SIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQVSTKSTAEELLE 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL LKFVEVDE+ SRLVLSN KA+  SQA+L IGSVVTG+VQ LKPYGAFIDIGGINGL
Sbjct: 241 KELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQIS + +SDIATVLQPGD+LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVF
Sbjct: 301 LHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           EKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 EKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 382

[Close]
BLAST of Cla009223 vs. NCBI nr
Match: gi|659076992|ref|XP_008438974.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 523.5 bits (1347), Expect = 3.3e-145
Identity = 281/392 (71.68%), Postives = 315/392 (80.36%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL       PLSSSR S    + +  +   + + LP+ +A  S P P  + 
Sbjct: 1   MASMAQQFTGLRC----VPLSSSRLSKPFSSKHLLN---KSRSLPVQAAVISGPIP--SP 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QTK R KLK++F+EAYERC  AP++GISFTLEDFHAAL  YDF +ELGTKVKGTVFCTD 
Sbjct: 61  QTKERFKLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDN 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSV 180
           NGALVD TAK +AYLP QEACI +I+HVEE GI+PGL EEFVII E E  D LILSL+S+
Sbjct: 121 NGALVDITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+V+KGKVV A KGG+V +VEGLRGFVPFSQIS KST EELLNKE
Sbjct: 181 QYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           L LKFVEVDE+ SRLVLSN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGLLH
Sbjct: 241 LPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + ISDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           A+EMAQ FRQRIAQAE +ARA +L FQ E  L
Sbjct: 361 AEEMAQTFRQRIAQAEALARADMLRFQPESGL 383

[Close]
BLAST of Cla009223 vs. NCBI nr
Match: gi|225432062|ref|XP_002280604.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera])

HSP 1 Score: 522.7 bits (1345), Expect = 5.7e-145
Identity = 279/394 (70.81%), Postives = 318/394 (80.71%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQ--RPKVLPLVSAAASSPSPIS 60
           M+  A Q  GL      PP+SSSR S        FSP Q  +P  + +VSA A     IS
Sbjct: 1   MACLAQQFTGLRC----PPISSSRLSKP------FSPKQPQKPSFVRIVSAVA-----IS 60

Query: 61  NAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCT 120
           NAQTK RLKLK++F++AYERC TAP +G+SF+ +DF++AL  YDF +E+GTKVKGTVFCT
Sbjct: 61  NAQTKERLKLKEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCT 120

Query: 121 DANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLK 180
           D NGALVD TAK +AYLP  EACI KI+HVEE GI PG+ EEFVII E E  D LILSL+
Sbjct: 121 DTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLR 180

Query: 181 SVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLN 240
           S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+K+T EELL+
Sbjct: 181 SIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLD 240

Query: 241 KELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGL 300
           KEL +KFVEVDE+ SRLVLSN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGL
Sbjct: 241 KELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGL 300

Query: 301 LHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVF 360
           LHVSQIS + +SDIATVLQPGD+LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVF
Sbjct: 301 LHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVF 360

Query: 361 EKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           EKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 EKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. NCBI nr
Match: gi|823164599|ref|XP_012482242.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 521.9 bits (1343), Expect = 9.7e-145
Identity = 283/396 (71.46%), Postives = 315/396 (79.55%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKV----LPLVSAAASSPSP 60
           M+S A Q  GL      PPLSSSRFS          P Q  KV     P+VSA A     
Sbjct: 1   MASLAQQFTGLRC----PPLSSSRFSVK--------PKQTQKVGAFASPIVSAVA----- 60

Query: 61  ISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVF 120
           +SNAQTK RL+LK++F++AYERC TAPM+G++FT+EDF  AL  YDF +ELGTKVKGTVF
Sbjct: 61  VSNAQTKDRLELKKMFEDAYERCRTAPMEGVAFTVEDFQNALEKYDFDSELGTKVKGTVF 120

Query: 121 CTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILS 180
           CTD NGALVD TAK +AYLP QEA I KI+HVEEVGI PGL EEF+II E E  D LILS
Sbjct: 121 CTDGNGALVDITAKSSAYLPVQEASIHKIKHVEEVGIVPGLREEFMIIGENEADDSLILS 180

Query: 181 LKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEEL 240
           L+S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+KST EEL
Sbjct: 181 LRSIQYELAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKSTAEEL 240

Query: 241 LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGIN 300
           L+KEL LKFVEVDE+ SRLV SN KA+  SQA+L IGSVV GTVQ LKPYGAFIDIGGIN
Sbjct: 241 LDKELPLKFVEVDEEQSRLVFSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGIN 300

Query: 301 GLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKL 360
           GLLHVSQIS + +SDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NP L
Sbjct: 301 GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTL 360

Query: 361 VFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           VFEKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 VFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. NCBI nr
Match: gi|728833359|gb|KHG12802.1| (4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Gossypium arboreum])

HSP 1 Score: 520.8 bits (1340), Expect = 2.2e-144
Identity = 282/396 (71.21%), Postives = 315/396 (79.55%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKV----LPLVSAAASSPSP 60
           M+S A Q  GL      PPLSSSRFS          P Q  KV     P+VSA A     
Sbjct: 1   MASLAQQFTGLRC----PPLSSSRFSVK--------PKQTQKVGAFASPIVSAVA----- 60

Query: 61  ISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVF 120
           +SNAQTK RL+LK++F++AYERC TAPM+G++FT+EDF  AL  YDF +ELGTKVKGTVF
Sbjct: 61  VSNAQTKDRLELKKMFEDAYERCRTAPMEGVAFTVEDFQNALEKYDFDSELGTKVKGTVF 120

Query: 121 CTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILS 180
           CTD NGALVD TAK +AYLP QEA I KI+HVEEVGI PGL EEF+II E E  D LILS
Sbjct: 121 CTDGNGALVDITAKSSAYLPVQEASIHKIKHVEEVGIVPGLREEFMIIGENEADDSLILS 180

Query: 181 LKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEEL 240
           L+S+QY LAWERCRQLQAED+V+KGKVVGA KGG+V LVEGLRGFVPFSQIS+K+T EEL
Sbjct: 181 LRSIQYELAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKATAEEL 240

Query: 241 LNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGIN 300
           L+KEL LKFVEVDE+ SRLV SN KA+  SQA+L IGSVV GTVQ LKPYGAFIDIGGIN
Sbjct: 241 LDKELPLKFVEVDEEQSRLVFSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGIN 300

Query: 301 GLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKL 360
           GLLHVSQIS + +SDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NP L
Sbjct: 301 GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTL 360

Query: 361 VFEKADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           VFEKA+EMAQ FRQRIAQAE MARA +L FQ E  L
Sbjct: 361 VFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379

[Close]
BLAST of Cla009223 vs. NCBI nr
Match: gi|449459770|ref|XP_004147619.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus])

HSP 1 Score: 518.8 bits (1335), Expect = 8.2e-144
Identity = 279/392 (71.17%), Postives = 313/392 (79.85%), Query Frame = 1 

Query: 1   MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNA 60
           M+S A Q  GL       PLSSSR S   ++   F    R   LP+ +A  S P P  + 
Sbjct: 1   MASMAQQFTGLRCA----PLSSSRLS-KPFSSKHFLNKSRS--LPVQAAVISGPIP--SP 60

Query: 61  QTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDA 120
           QT+ R KLK++F+EAYERC  AP++GISFTLEDFHAAL  YDF +ELGTKVKGTVFCTD 
Sbjct: 61  QTRERFKLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDN 120

Query: 121 NGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSV 180
           NGALVD TAK +AYLP QEACI +I+HVEE G++PGL EEFVII E E  D LILSL+S+
Sbjct: 121 NGALVDITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSI 180

Query: 181 QYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKE 240
           QY LAWERCRQLQAED+V+KGKVV A KGG+V +VEGLRGFVPFSQIS KS  EELL+KE
Sbjct: 181 QYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKE 240

Query: 241 LRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLH 300
           L LKFVEVDE+ SRLVLSN KA+  SQA+L IGSVVTGTVQ LKPYGAFIDIGGINGLLH
Sbjct: 241 LPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH 300

Query: 301 VSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEK 360
           VSQIS + ISDIATVLQPGD LKVMILS+D  +GRVSLSTKKLEPTPGDMI NPKLVFEK
Sbjct: 301 VSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 360

Query: 361 ADEMAQIFRQRIAQAETMARAGLLGFQLECSL 393
           A+EMAQ FRQRIAQAE +ARA +L FQ E  L
Sbjct: 361 AEEMAQTFRQRIAQAEALARADMLRFQPESGL 383

The following BLAST results are available for this feature:
BLAST of Cla009223 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR1_SPIOL5.7e-14571.0930S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1[more]
RPS1_ARATH1.5e-13765.8230S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=... [more]
RS1_SYNP68.4e-7247.7830S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
RS1A_SYNY35.5e-7148.9730S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
RR1_PORPU2.2e-4035.5030S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1[more]
BLAST of Cla009223 vs. TrEMBL
Match NameE-valueIdentityDescription
D7SYG9_VITVI4.0e-14570.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=... [more]
A0A0D2RGN4_GOSRA6.8e-14571.46Uncharacterized protein OS=Gossypium raimondii GN=B456_005G069200 PE=4 SV=1[more]
A0A0B0NJL9_GOSAR1.5e-14471.214-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gossypium arboreum GN=F383... [more]
A0A0D2N8P2_GOSRA5.7e-14471.21Uncharacterized protein OS=Gossypium raimondii GN=B456_005G069200 PE=4 SV=1[more]
A0A0J8CTT9_BETVU9.8e-14470.56Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 S... [more]
BLAST of Cla009223 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076992|ref|XP_008438974.1|3.3e-14571.68PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo][more]
gi|225432062|ref|XP_002280604.1|5.7e-14570.81PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera][more]
gi|823164599|ref|XP_012482242.1|9.7e-14571.46PREDICTED: 30S ribosomal protein S1, chloroplastic [Gossypium raimondii][more]
gi|728833359|gb|KHG12802.1|2.2e-14471.214-hydroxy-3-methylbut-2-enyl diphosphate reductase [Gossypium arboreum][more]
gi|449459770|ref|XP_004147619.1|8.2e-14471.17PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000110Ribosomal protein S1
IPR003029S1_domain
IPR012340NA-bd_OB-fold
IPR022967S1_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009735 response to cytokinin
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0009902 chloroplast relocation
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0016020 membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009223Cla009223.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000110Ribosomal protein S1PRINTSPR00681RIBOSOMALS1coord: 108..126
score: 8.9E-11coord: 199..215
score: 8.9E-11coord: 217..234
score: 8.9E-11coord: 126..140
score: 8.9
IPR003029S1 domainPFAMPF00575S1coord: 270..341
score: 4.7E-19coord: 195..258
score: 3.
IPR003029S1 domainPROFILEPS50126S1coord: 108..178
score: 10.234coord: 196..260
score: 13.699coord: 273..341
score: 20
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 263..345
score: 9.0E-22coord: 186..258
score: 4.
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 266..347
score: 8.95E-20coord: 196..262
score: 9.7E-9coord: 106..204
score: 4.
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 271..341
score: 2.9E-22coord: 194..260
score: 2.7E-7coord: 106..178
score: 0
NoneNo IPR availablePANTHERPTHR10724S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 46..389
score: 1.2E
NoneNo IPR availablePANTHERPTHR10724:SF7RIBOSOMAL PROTEIN S1-RELATEDcoord: 46..389
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla009223Cla97C05G088350Watermelon (97103) v2wmwmbB402
Cla009223Cla97C06G113780Watermelon (97103) v2wmwmbB406
Cla009223Csa3G168960Cucumber (Chinese Long) v2cuwmB279
Cla009223MELO3C006733Melon (DHL92) v3.5.1mewmB486
Cla009223ClCG06G004350Watermelon (Charleston Gray)wcgwmB344
Cla009223ClCG05G006720Watermelon (Charleston Gray)wcgwmB311
Cla009223CSPI03G15150Wild cucumber (PI 183967)cpiwmB281
Cla009223Cucsa.252380Cucumber (Gy14) v1cgywmB483
Cla009223CmaCh17G003890Cucurbita maxima (Rimu)cmawmB358
Cla009223CmaCh06G015760Cucurbita maxima (Rimu)cmawmB811
Cla009223CmoCh17G003780Cucurbita moschata (Rifu)cmowmB353
Cla009223CmoCh06G015700Cucurbita moschata (Rifu)cmowmB803
Cla009223Cp4.1LG12g03330Cucurbita pepo (Zucchini)cpewmB161
Cla009223Cp4.1LG08g05330Cucurbita pepo (Zucchini)cpewmB853
Cla009223CsGy3G015300Cucumber (Gy14) v2cgybwmB262
Cla009223MELO3C006733.2Melon (DHL92) v3.6.1medwmB474
Cla009223Carg05566Silver-seed gourdcarwmB0073
Cla009223CsaV3_3G015350Cucumber (Chinese Long) v3cucwmB288
Cla009223Bhi12G001758Wax gourdwgowmB105
Cla009223Bhi01G000802Wax gourdwgowmB238
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla009223Cla021812Watermelon (97103) v1wmwmB138
The following block(s) are covering this gene:
GeneOrganismBlock
Cla009223Cucurbita moschata (Rifu)cmowmB867
Cla009223Melon (DHL92) v3.5.1mewmB141
Cla009223Watermelon (Charleston Gray)wcgwmB081
Cla009223Cucumber (Chinese Long) v2cuwmB546
Cla009223Cucurbita pepo (Zucchini)cpewmB340
Cla009223Bottle gourd (USVL1VR-Ls)lsiwmB040
Cla009223Bottle gourd (USVL1VR-Ls)lsiwmB280
Cla009223Cucumber (Gy14) v2cgybwmB511
Cla009223Melon (DHL92) v3.6.1medwmB139
Cla009223Silver-seed gourdcarwmB0701
Cla009223Cucumber (Chinese Long) v3cucwmB572
Cla009223Watermelon (97103) v2wmwmbB389
Cla009223Watermelon (97103) v2wmwmbB420
Cla009223Wax gourdwgowmB055
Cla009223Watermelon (97103) v1wmwmB038
Cla009223Watermelon (97103) v1wmwmB056
Cla009223Cucumber (Gy14) v1cgywmB237
Cla009223Cucurbita maxima (Rimu)cmawmB878