Lsi05G014050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G014050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S1
Locationchr05 : 21944978 .. 21949412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGTATATATATTTGTAAAATGCAATCTTCAATACCTTATCCAACCCAAAACCACATCAACTGTGTACAGAGTAGTCTGAGAAACGCTGAGCGAAGAAGGAAAATGGCTTCCATGGCTCAGCAATTTACTGGGTTGCGAAGTGTGCCTCTTTCTTCATCGCGTCTCTCGAAGCCATTTTCTTCGAGGCATTTGCAGAACAAGGCCCGTTCGCTCCCCGTTCAAGCTGCAGTCATTTCGAGCCCCATTCCCAGTCCTCAGACCAAGGAGCGTTTCAAGCTCAAGGAGGTCTTCGAGGAGGCCTACGAACGCTGCCGTAATGCCCCTGTGGAAGGCATAGCCTTCACTCTCGAGGACTTCCATGCCGCTCTTGAAAAATACGACTTCGATTCTGAAATGGGAACTAAGGTTATTTCCGGGTTTTCTTTATAATCTTATAATTTTTTGGGTTTTCTAGTTGATTATACTGGAAGGGATATCGGGAAGTTGCATGGTATGTTAATTTGATGTTGTGGTGGCAAAATAAGTTATGCGATTGCTTTTGGGAATTGGGATTGTTCTGATAGTGTTGGCTTTTAATTCGTTTATGTAATTTAGTGAATTTTCTTGTCAATTACACTGGAATTTGGGTTCTGTAAACTTGAATGCTTTGTGGGAATTGGGAAGTATATTGATAGTGTTATCTTCTAGCACAACAATGAAATGCTAGAGGTGCATTTGAAGGAGATTGGGTTGTAATTTATGCAGTGTCTCTTTTCAGGTGAAAGGTACTGTGTTTTGTACGGATAATAATGGAGCACTTGTTGACATTACTGCCAAGTCATCTGCATATTTGCCAGTGCAAGAGGCTTGCATTCACAGAATAAAACATGTAGAAGAAGCAGGAATATTTCCTGGTTTGAGAGAGGAGTTTGTTATTATTGGTGAGAATGAAGCTGATGATAGCTTGATTTTGAGCTTGAGATCCATTCAATATGATCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGACGTTGTTGTCAAGGGTAAGGTGTGTATTTCCCCTCCAACTTGTGGTGCTTTCGTTTTTCTTTGTCGTCTTAAGTTTGGGTGTAAGATCATTGTCTAGTTGTGTAATAAGAAACTAGGAAGTGTTATAGCATTCCCGGTACCACTTGGGGGGTGTGGGTGGGTGGGGGGGATGGTTGTTCTAGCTCTATTCCCGTTATCATTTGTTGTGCTTTGTCATACTATTGTTTTCTCTTTCATAGGTCATCCATTTTAAATAACCACTAGACCCAAAGGTTTAAGGTGATGGTTTTTTGTAAATTTAATATGTGGACTTGAAAATTTGCACAAGGCTCAACAAGTGATCATGAATATTAAATAAGAAGGAAAGAACATTTCAGAGTTTCAACATAGGATTTCGACTTTCATACTATATTTAATTACCACTAAACCCAAAAACTTGGTGTTAGATTACGGTAAATTTTATCTTTTATCAACACTTAACAATTCATAATGTAGCCATTTCTTTTGTATTCAATATTCAGGTGGTTGATGCAAATAAAGGTGGAGTTGTGGCAGTTGTGGAAGGTCTAAGAGGGTTTGTCCCTTTCTCACAGATATCAACGGTATTTTCTCTTAGCTCCCAATGACACTCATATTTTGAGAGATTCCTTCGTTTTATGTATATATAATATATTATAGTTACTGTTGGAGTGAAGTTTTTTAGTTTCTCACAATTGTTAATTGACGAATGGTTTTACATGGCGTTATTTACAAAGGTCATGCTGCTTTTCCACTTCCTTCCCCTACAATTGTTAATTGGATAAAAACGATCTACTCTTCTTTATTTTATGTGTGAATTCCTTTCCTTTTTGGAGTCAAGGATTGTAGATGTACAAATTGGATCATTGGTACTATTTTAGTTTTCTTGATGTTAATTATATACTGCTAATTAACACCAATACCTAATTTGTCTTTTTGTTCATGCAATTGTTTCAGAAATCAACTGCTGAAGAGCTTCTCAACAAGGAGCTTCCTCTAAAGTTTGTGGAGGTTGATGAAGAACAATCGAGGCTTGTCCTCAGTAACCGTAAGGCCATGGCTGACAGCCAGGCCCAACTTGGAATTGGATCAGTGGTCACTGGGACAGTTCAAAGCCTTAAACCGTATGGTGCATTCATTGACATTGGTGGAATCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGATCGGATATCGGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTAGTTTAATGCCCTTCAAGTGAATTTTAGGGGATTCGAACACTCTTGATCCCAAGATTTACAATTAGTTCTTTTGGCATAGGTCATGATATTGAGTCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAGTTAGAGCCCACTCCTGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGTATTCTCTTTGCTAGCTAGAGTTGTATTTTTCTGTCATTTTTGTACCGATGCTGCTCTTTCTTGTTATATGTGCATTTGCTTGCACACGCGAACATGCTTTGGTCTTTCAGCCTTTACCATAATGATATACGTCACTAGTTTTAGTGCAACTTTAATTATGGCCAATATCTTGTGCCTTGTTAGGGCAGCGGAAACTGCTGACTAATGCTAATGCTAATGCTAATTCACCTTCATCTCTTGTAGCATGTCTTTCTTCTTTTCAGCATTTAAAAACTATGATTTTTTCGGACTCTTTTATCAGTTTTTGGTGGTTATCCCTTGAATGTTGAAAGCAAAATCTAGAGGCAAGTGGAGGAATGCTTAAAAGCTCTGCTTGATATTGAAAGTAGTAAATATTTGTTGGTTTGTTAGCTTTATTCTGTTTGCTGGTTTGGTTTCTTTTGCCTTCTTGTAATGATTTTATTGCTTTTCACTCCTTTTGGAGTTTGTATCCCCGAACATTAGTCTCTTTTCATTTTCTTAATGAAAAGTTTTATTACTTGTTTAAATAAAAAAGTAGTAAATATTTTGAAAATAGAGGGTGATCTTAGAGTTTCTGGATCCTTTGTTTTGGGTAGCCTCTTTATCTTCTTTCTAGATTTTTTTTTTCTATTACAGAGTTCATTTCCTATCAAATAGTGAAAAAAGGAAGAGGAAGCAAAATAGCAACGGATATAATTGTAACTGTGATTTTGTTTCCATCTACAGGCTGAGGAGATGGCACAAACGTTCAGGCAAAGAATAGCCCAAGCAGAGGCAATGGCACGCGCAGACATGCTTAGGTTTCAGCCTGAGGTACTATACAACTATCTATCCTTGAAATTTCTAAACTGTACCTTAGCTAAAACGTAAATGATAAATGCAACTAAATGGTACATCCCAGAGTTCTAAACCATACATTAGCTAAAACTCTCTTTATTAACCAACTTGATAAACAATCTACATCATTGCTTATTCTCTTTGTGTGTCAAGTAGGAAGACAATGATGTAGAATTATTCGAATATAAAGGAATATTATCGTTGATTAGGAAATGATAATAGGTTGCACTCAGTAGGATACTGAGCCGGATATTCATATACTTTTTGGCTGATATCCTATGATCTACGAGGATTCTTGTAGGATATTGTGTTGGATATTCCTGCGGTAAGTGTATTGAACATAACTTTTGGACTAATTGAAAGCGTTTTTTTATAAGAAATTAAAAGTGTTTATGACTAATTGAGAATACTTTTTCATGTGGTCAAAAAGTACCATCAAAAGCATTTTAAAGTGCTTTTAAAAGAAACAATTATTTTTAAAAATTGTTGAAAATGCTTACAGAAACAGATTAACTCACATGAAAGGCTCTCTGATGTCATTCAAACACATTCCAAGCCCTCACTAATGATCTCAGAAACGAACAATGAATTGATTCTTCAGATATTGAGTCTTGTTCTCAATCATCTGTCGTTGTCTTGTATTTCTCTCTGCAGCATAATTTATATTGTTGGATTTGAACTTAAATGATGACTTGTTTTCTTAACCATACAGAGTGGTTTGACTTTGACTACTGATGGAATATTGGGACCAATTACCCCAGAGTTGCCTGTAGAGGGCTTATATTTGAATGATGTACCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGTTGTATTCTGTACAATGTTTCACTTTGTATACAAACTTCTGCCATTGTAATTGGGTACGCAACTTCGCCCTTCATGTCATAGCTTAGTTTTGAATGCTTAATCAAAGCCCGCTTGCTAGTTCATTTTCGTTCTCTATTATTTGTTTCTTTGGTTTCTGCATCGAAAATGAAAGTATGATCAACACTGCCACATTCCCAAGTTAAAAATATTCCATGCTAGTTGAAATGTATCTGAAAAATATGTTTGATCAACACTGCCATATTTTTTTTCTCT

mRNA sequence

CGTGTATATATATTTGTAAAATGCAATCTTCAATACCTTATCCAACCCAAAACCACATCAACTGTGTACAGAGTAGTCTGAGAAACGCTGAGCGAAGAAGGAAAATGGCTTCCATGGCTCAGCAATTTACTGGGTTGCGAAGTGTGCCTCTTTCTTCATCGCGTCTCTCGAAGCCATTTTCTTCGAGGCATTTGCAGAACAAGGCCCGTTCGCTCCCCGTTCAAGCTGCAGTCATTTCGAGCCCCATTCCCAGTCCTCAGACCAAGGAGCGTTTCAAGCTCAAGGAGGTCTTCGAGGAGGCCTACGAACGCTGCCGTAATGCCCCTGTGGAAGGCATAGCCTTCACTCTCGAGGACTTCCATGCCGCTCTTGAAAAATACGACTTCGATTCTGAAATGGGAACTAAGGTGAAAGGTACTGTGTTTTGTACGGATAATAATGGAGCACTTGTTGACATTACTGCCAAGTCATCTGCATATTTGCCAGTGCAAGAGGCTTGCATTCACAGAATAAAACATGTAGAAGAAGCAGGAATATTTCCTGGTTTGAGAGAGGAGTTTGTTATTATTGGTGAGAATGAAGCTGATGATAGCTTGATTTTGAGCTTGAGATCCATTCAATATGATCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGACGTTGTTGTCAAGGGTAAGAAATCAACTGCTGAAGAGCTTCTCAACAAGGAGCTTCCTCTAAAGTTTGTGGAGGTTGATGAAGAACAATCGAGGCTTGTCCTCAGTAACCGTAAGGCCATGGCTGACAGCCAGGCCCAACTTGGAATTGGATCAGTGGTCACTGGGACAGTTCAAAGCCTTAAACCGTATGGTGCATTCATTGACATTGGTGGAATCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGATCGGATATCGGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGTCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAGTTAGAGCCCACTCCTGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCACAAACGTTCAGGCAAAGAATAGCCCAAGCAGAGGCAATGGCACGCGCAGACATGCTTAGGTTTCAGCCTGAGGATATTGTGTTGGATATTCCTGCGAGTGGTTTGACTTTGACTACTGATGGAATATTGGGACCAATTACCCCAGAGTTGCCTGTAGAGGGCTTATATTTGAATGATGTACCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGTTGTATTCTGTACAATGTTTCACTTTGTATACAAACTTCTGCCATTGTAATTGGGTACGCAACTTCGCCCTTCATGTCATAGCTTAGTTTTGAATGCTTAATCAAAGCCCGCTTGCTAGTTCATTTTCGTTCTCTATTATTTGTTTCTTTGGTTTCTGCATCGAAAATGAAAGTATGATCAACACTGCCACATTCCCAAGTTAAAAATATTCCATGCTAGTTGAAATGTATCTGAAAAATATGTTTGATCAACACTGCCATATTTTTTTTCTCT

Coding sequence (CDS)

ATGCAATCTTCAATACCTTATCCAACCCAAAACCACATCAACTGTGTACAGAGTAGTCTGAGAAACGCTGAGCGAAGAAGGAAAATGGCTTCCATGGCTCAGCAATTTACTGGGTTGCGAAGTGTGCCTCTTTCTTCATCGCGTCTCTCGAAGCCATTTTCTTCGAGGCATTTGCAGAACAAGGCCCGTTCGCTCCCCGTTCAAGCTGCAGTCATTTCGAGCCCCATTCCCAGTCCTCAGACCAAGGAGCGTTTCAAGCTCAAGGAGGTCTTCGAGGAGGCCTACGAACGCTGCCGTAATGCCCCTGTGGAAGGCATAGCCTTCACTCTCGAGGACTTCCATGCCGCTCTTGAAAAATACGACTTCGATTCTGAAATGGGAACTAAGGTGAAAGGTACTGTGTTTTGTACGGATAATAATGGAGCACTTGTTGACATTACTGCCAAGTCATCTGCATATTTGCCAGTGCAAGAGGCTTGCATTCACAGAATAAAACATGTAGAAGAAGCAGGAATATTTCCTGGTTTGAGAGAGGAGTTTGTTATTATTGGTGAGAATGAAGCTGATGATAGCTTGATTTTGAGCTTGAGATCCATTCAATATGATCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGACGTTGTTGTCAAGGGTAAGAAATCAACTGCTGAAGAGCTTCTCAACAAGGAGCTTCCTCTAAAGTTTGTGGAGGTTGATGAAGAACAATCGAGGCTTGTCCTCAGTAACCGTAAGGCCATGGCTGACAGCCAGGCCCAACTTGGAATTGGATCAGTGGTCACTGGGACAGTTCAAAGCCTTAAACCGTATGGTGCATTCATTGACATTGGTGGAATCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGATCGGATATCGGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGTCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAGTTAGAGCCCACTCCTGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCACAAACGTTCAGGCAAAGAATAGCCCAAGCAGAGGCAATGGCACGCGCAGACATGCTTAGGTTTCAGCCTGAGGATATTGTGTTGGATATTCCTGCGAGTGGTTTGACTTTGACTACTGATGGAATATTGGGACCAATTACCCCAGAGTTGCCTGTAGAGGGCTTATATTTGAATGATGTACCTCCAGCTGAAGAGTGA

Protein sequence

MQSSIPYPTQNHINCVQSSLRNAERRRKMASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKKSTAEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAEE
Homology
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BLAST of Lsi05G014050 vs. Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 3.5e-169
Identity = 322/422 (76.30%), Postives = 355/422 (84.12%), Query Frame = 1 

Query: 29  MASMAQQFTG-LRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKL 88
           MAS+AQQ  G LR  PLS+S LSKPFS +H   K R  P+ +AV  S   + QT+ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTL-KPRFSPIVSAVAVS---NAQTRERQKL 60

Query: 89  KEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDIT 148
           K++FE+AYERCRNAP+EG++FT++DFH AL+KYDF+SEMG++VKGTVFCTD NGALVDIT
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 120

Query: 149 AKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWER 208
           AKSSAYLP+ EACI+RIK+VEEAGI PG+REEFVIIGENEADDSLILSLR IQY+LAWER
Sbjct: 121 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWER 180

Query: 209 CRQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEV 268
           CRQLQAEDVVVKGK                           KS+AEELL KE+PLKFVEV
Sbjct: 181 CRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEV 240

Query: 269 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 328
           DEEQSRLV+SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 241 DEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 329 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 388
           +SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 301 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 389 RQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPA 423
           RQRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+T +LP EGL L+ VPPA
Sbjct: 361 RQRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 410

[Close]
BLAST of Lsi05G014050 vs. Swiss-Prot
Match: RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 8.0e-158
Identity = 304/423 (71.87%), Postives = 349/423 (82.51%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPL-SSSRLSKPFSSRHLQNKARSL-PVQAAVISSPIPSPQTKERFK 88
           MAS+AQQF+GLR  PL SSSRLS+  S    QNK+ S+ P   A ++  + S QTKER +
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVA--MSSGQTKERLE 60

Query: 89  LKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDI 148
           LK++FE+AYERCR +P+EG+AFT++DF AA+E+YDF+SE+GT+VKGTVF TD NGALVDI
Sbjct: 61  LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 120

Query: 149 TAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWE 208
           +AKSSAYL V++ACIHRIKHVEEAGI PG+ EEFVIIGENE+DDSL+LSLR+IQY+LAWE
Sbjct: 121 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 180

Query: 209 RCRQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVE 268
           RCRQLQAEDV+VK K                           K+ AEELL KE+PLKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 269 VDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 328
           VDEEQ++LVLSNRKA+ADSQAQLGIGSVV G VQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 329 RISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 388
           R+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 389 FRQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEG--LYLNDV 421
           FRQRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+  ELP +G  L ++D+
Sbjct: 361 FRQRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLGSELPDDGVDLTVDDI 413

[Close]
BLAST of Lsi05G014050 vs. Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-67
Identity = 140/296 (47.30%), Postives = 194/296 (65.54%), Query Frame = 1 

Query: 99  RNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITAKSSAYLPVQE 158
           ++ P   I FT EDF A L++YD+    G  V GTVF  +  GAL+DI AK++A+LPVQE
Sbjct: 4   QDIPAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQE 63

Query: 159 ACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVV 218
             I+R++  EE      +RE F++  ENE D  L LS+R I+Y  AWER RQLQ ED  V
Sbjct: 64  MSINRVESPEEVLQPSEMREFFILSDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATV 123

Query: 219 KGK---------------------------KSTAEELLNKELPLKFVEVDEEQSRLVLSN 278
           + +                           +   E+L+ +ELPLKF+EVDE+++RLVLS+
Sbjct: 124 RSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSH 183

Query: 279 RKAMADSQA-QLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQP 338
           R+A+ + +  +L +G VV G V+ +KPYGAFIDIGG++GLLH+S+ISHD I    +V   
Sbjct: 184 RRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNV 243

Query: 339 GDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 367
            D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++ Q
Sbjct: 244 NDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298

[Close]
BLAST of Lsi05G014050 vs. Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.0e-64
Identity = 137/294 (46.60%), Postives = 189/294 (64.29%), Query Frame = 1 

Query: 106 IAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITAKSSAYLPVQEACIHRIK 165
           I FTLEDF A L+KYD+    G  V GTVF  ++ GAL+DI AK++AY+P+QE  I+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 166 HVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGK---- 225
             EE  + P    EF I+ +   D  L LS+R I+Y  AWER RQLQAED  V+      
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 226 -----------------------KSTAEELLNKELPLKFVEVDEEQSRLVLSNRKAMADS 285
                                  +   E+L+ ++LPLKF+EVDEE++RLVLS+R+A+ + 
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 286 QAQ-LGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLKVM 345
           +   L +  VV G+V+ +KPYGAFIDIGG++GLLH+S+ISHD I    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 346 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 371
           I+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ R+A+A+ +
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302

[Close]
BLAST of Lsi05G014050 vs. Swiss-Prot
Match: RR1_PYRYE (30S ribosomal protein S1, chloroplastic OS=Pyropia yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 6.6e-35
Identity = 89/260 (34.23%), Postives = 144/260 (55.38%), Query Frame = 1 

Query: 108 FTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITAKSSAYLPVQEACIHRIKHV 167
           FT  +F A L+KY +D  +G  V GT+F  + NG LVDI    SAYLP+QE     +   
Sbjct: 8   FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQE-----VSSN 67

Query: 168 EEAGIFPGLR----EEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAED----VVVK 227
           ++   F  L      EF ++  N     LILS+R ++Y  AW+R RQL AED    V++K
Sbjct: 68  QDLNNFTSLNINDTREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIK 127

Query: 228 -----------------------GKKSTAEELLNKELPLKFVEVDEEQSRLVLSNRKAM- 287
                                  G    +E+  NK + LK + V+E+ + L+LS+R+A+ 
Sbjct: 128 GFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALI 187

Query: 288 ADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLK 336
           + + + L +G+++ G +  + PYG FI +G + GL+H+S+I+   +  I++  + GDT+K
Sbjct: 188 SQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIK 247

[Close]
BLAST of Lsi05G014050 vs. TrEMBL
Match: A0A0A0L5E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168960 PE=4 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 1.7e-186
Identity = 353/417 (84.65%), Postives = 366/417 (87.77%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MASMAQQFTGLR  PLSSSRLSKPFSS+H  NK+RSLPVQAAVIS PIPSPQT+ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           EVFEEAYERCRNAPVEGI+FTLEDFHAALEKYDFDSE+GTKVKGTVFCTDNNGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLP+QEACIHRIKHVEEAG+FPGLREEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGKKSTAEE-----------------------LLNKELPLKFVEVDEEQS 268
           RQLQAEDVVVKGK   A +                       L+   LP +      EQS
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTVMLIFHFLPPQLSIGYIEQS 240

Query: 269 RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA 328
           RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA
Sbjct: 241 RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA 300

Query: 329 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 388
           TVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA
Sbjct: 301 TVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 360

Query: 389 QAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAEE 423
           QAEA+ARADMLRFQPE        SGLTLTTDGILGPITPELPVEGL LNDVPPAEE
Sbjct: 361 QAEALARADMLRFQPE--------SGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 409

[Close]
BLAST of Lsi05G014050 vs. TrEMBL
Match: D7SYG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 2.6e-171
Identity = 326/421 (77.43%), Postives = 354/421 (84.09%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MA +AQQFTGLR  P+SSSRLSKPFS +  Q  +    V A  IS+     QTKER KLK
Sbjct: 1   MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNA----QTKERLKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           E+FE+AYERCR AP EG++F+ +DF++AL+KYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  EMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLPV EACIH+IKHVEEAGI PG+REEFVIIGENEADDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           K+TAEELL+KELP+KFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 423
           QRIAQAEAMARADMLRFQPE        SGLTL +DGILGP++ +LP EGL L+DVPPAE
Sbjct: 361 QRIAQAEAMARADMLRFQPE--------SGLTLNSDGILGPVSADLPAEGLDLSDVPPAE 409

[Close]
BLAST of Lsi05G014050 vs. TrEMBL
Match: A0A0J8CTT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 2.9e-170
Identity = 329/424 (77.59%), Postives = 357/424 (84.20%), Query Frame = 1 

Query: 29  MASMAQQFTG---LRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERF 88
           MAS+AQQ  G   LR  PLS+S LSKPFSS+H   K R+ P+ +AV  S   + QT+ER 
Sbjct: 1   MASLAQQLAGGLSLRCPPLSNSHLSKPFSSKHAL-KPRASPIVSAVAVS---NAQTRERA 60

Query: 89  KLKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVD 148
           KLK++FE+AYERCR AP +G+AFTLEDFH AL+KYDF+SE+GT+VKGTVFCTDNNGALVD
Sbjct: 61  KLKQLFEDAYERCRIAPTQGVAFTLEDFHTALDKYDFNSELGTRVKGTVFCTDNNGALVD 120

Query: 149 ITAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAW 208
           ITAKSSAYLP+QEACIHRIKHVEEAGI PGLR+EFVIIGENEADDSLILSLRSIQY+LAW
Sbjct: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIVPGLRDEFVIIGENEADDSLILSLRSIQYELAW 180

Query: 209 ERCRQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFV 268
           ERCRQLQAEDVVVKGK                           KSTAEELL KELPLKFV
Sbjct: 181 ERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQVSTKSTAEELLEKELPLKFV 240

Query: 269 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 328
           EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTG+VQSLKPYGAFIDIGGINGLLHVSQISH
Sbjct: 241 EVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 329 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 388
           DR+SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ
Sbjct: 301 DRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 389 TFRQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVP 423
           TFRQRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+T +LP EGL L+ VP
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPVTSDLPPEGLDLSAVP 412

[Close]
BLAST of Lsi05G014050 vs. TrEMBL
Match: A0A059B550_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04084 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 1.6e-168
Identity = 321/421 (76.25%), Postives = 352/421 (83.61%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKA--RSLPVQAAVISSPIPSPQTKERFK 88
           MAS+AQQFTGLR  PLS SRLS PF+  H + +A  R  P +  V +  I + +T++R +
Sbjct: 1   MASLAQQFTGLRCPPLSRSRLSDPFAPPHRRRQAPARPGPSKTVVSAVAISNARTRDRNE 60

Query: 89  LKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDI 148
           LK +F++AYERCR AP+EG+AFTLEDFH AL+KYDF+SE+GTKVKGTVFCTD NGALVDI
Sbjct: 61  LKHLFDDAYERCRTAPMEGVAFTLEDFHTALDKYDFNSELGTKVKGTVFCTDGNGALVDI 120

Query: 149 TAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWE 208
           TAKSSA LPVQEACIHRIKHVEEAGI PG++EEFVIIGENEADDSLILSLR+IQYDLAWE
Sbjct: 121 TAKSSALLPVQEACIHRIKHVEEAGIVPGMKEEFVIIGENEADDSLILSLRTIQYDLAWE 180

Query: 209 RCRQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVE 268
           RCRQLQAEDVVVKGK                           K+ AEEL+ KELPLKFVE
Sbjct: 181 RCRQLQAEDVVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTKTIAEELIEKELPLKFVE 240

Query: 269 VDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 328
           VDEEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 241 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 329 RISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 388
           R+SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 389 FRQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPP 421
           FRQRIAQAEAMARADMLRFQPE        SGLTL++DGILGP++ +LP EGL L+DVP 
Sbjct: 361 FRQRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLSSDLPAEGLDLSDVPA 413

[Close]
BLAST of Lsi05G014050 vs. TrEMBL
Match: M5XQU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006438mg PE=4 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 4.6e-168
Identity = 325/420 (77.38%), Postives = 352/420 (83.81%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MAS+AQQFTGLR  PLS+SRLSKP         A  LPV +AV    I + QTKER KLK
Sbjct: 1   MASLAQQFTGLRCPPLSTSRLSKPSVFPKQNKMAGLLPVVSAVA---ISNAQTKERLKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           E+FE+A+ERCR AP+EG++F L+ F++ALEKYDF+SE+GTKVKGTVF  DN GALVDITA
Sbjct: 61  ELFEDAHERCRTAPMEGVSFNLDSFYSALEKYDFNSEIGTKVKGTVFNIDNYGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLPVQEACIH+IK VEE GI PG+REEFVIIGENEADDSLILSL+SIQYDLAWERC
Sbjct: 121 KSSAYLPVQEACIHKIKSVEEVGIVPGVREEFVIIGENEADDSLILSLKSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           KSTAEELL+KE+PLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTKSTAEELLDKEIPLKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMAD+QAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241 EEQSRLVLSNRKAMADNQAQLGIGSVVLGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 422
           QRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+T +LPVEGL L+DVPPAE
Sbjct: 361 QRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLTSDLPVEGLDLSDVPPAE 409

[Close]
BLAST of Lsi05G014050 vs. TAIR10
Match: AT5G30510.1 (AT5G30510.1 ribosomal protein S1)

HSP 1 Score: 558.1 bits (1437), Expect = 4.5e-159
Identity = 304/423 (71.87%), Postives = 349/423 (82.51%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPL-SSSRLSKPFSSRHLQNKARSL-PVQAAVISSPIPSPQTKERFK 88
           MAS+AQQF+GLR  PL SSSRLS+  S    QNK+ S+ P   A ++  + S QTKER +
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVA--MSSGQTKERLE 60

Query: 89  LKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDI 148
           LK++FE+AYERCR +P+EG+AFT++DF AA+E+YDF+SE+GT+VKGTVF TD NGALVDI
Sbjct: 61  LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 120

Query: 149 TAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWE 208
           +AKSSAYL V++ACIHRIKHVEEAGI PG+ EEFVIIGENE+DDSL+LSLR+IQY+LAWE
Sbjct: 121 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 180

Query: 209 RCRQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVE 268
           RCRQLQAEDV+VK K                           K+ AEELL KE+PLKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 269 VDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 328
           VDEEQ++LVLSNRKA+ADSQAQLGIGSVV G VQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 329 RISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 388
           R+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 389 FRQRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEG--LYLNDV 421
           FRQRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+  ELP +G  L ++D+
Sbjct: 361 FRQRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLGSELPDDGVDLTVDDI 413

[Close]
BLAST of Lsi05G014050 vs. TAIR10
Match: AT3G23700.1 (AT3G23700.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-17
Identity = 46/122 (37.70%), Postives = 78/122 (63.93%), Query Frame = 1 

Query: 225 AEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVTGTVQSLKPYGAFID 284
           A+ L+  +LP+K V+ DEE  +L+LS + A+    +Q + +G V  G V S++ YGAFI 
Sbjct: 155 AKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIH 214

Query: 285 IG------GINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 340
           +        + GL+HVS++S D + D+  VL+ GD ++V++ + D+E+ R++LS K+LE 
Sbjct: 215 LRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLED 274

[Close]
BLAST of Lsi05G014050 vs. TAIR10
Match: AT1G71720.1 (AT1G71720.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-13
Identity = 45/141 (31.91%), Postives = 85/141 (60.28%), Query Frame = 1 

Query: 226 EELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIG 285
           +E + +   ++   ++E+++ L+LS + A    +  L  G+++ GTV  + PYGA + +G
Sbjct: 325 KENVGRRFLVQITRLNEDKNDLILSEKVAW--EKLYLREGTLLEGTVVKILPYGAQVKLG 384

Query: 286 GIN--GLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 345
             +  GLLH+S I+  RI  ++ VLQ  +++KV+++       ++SLS   LE  PG  I
Sbjct: 385 DSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEPGLFI 444

Query: 346 RNPKLVFEKAEEMAQTFRQRI 365
            + + VF +AEEMA+ +R+++
Sbjct: 445 SDREKVFTEAEEMAKKYREKM 462

[Close]
BLAST of Lsi05G014050 vs. TAIR10
Match: AT5G14580.1 (AT5G14580.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-12
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1 

Query: 238 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVTGTVQSLKPYGAFIDI-GGIN 297
           + +D     +V  N+  M  +Q Q        L +G V  GTV S+K YGAF++  GG  
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702

Query: 298 GLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 340
           GLLH+S++SH+ +S ++ VL  G  +  M +  D  RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

[Close]
BLAST of Lsi05G014050 vs. TAIR10
Match: AT4G29060.1 (AT4G29060.1 elongation factor Ts family protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-09
Identity = 28/76 (36.84%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 265 GSVVTGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDR 324
           G+  TG V++++P+GAF+D G   +GL+HVSQ+S + + D+++V+  G  +KV ++  D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 325 ERGRVSLSTKKLEPTP 340
           E  R+SL+ ++ +  P
Sbjct: 196 ESKRISLTMRENDDPP 211

[Close]
BLAST of Lsi05G014050 vs. NCBI nr
Match: gi|659076992|ref|XP_008438974.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 706.4 bits (1822), Expect = 2.9e-200
Identity = 375/421 (89.07%), Postives = 382/421 (90.74%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MASMAQQFTGLR VPLSSSRLSKPFSS+HL NK+RSLPVQAAVIS PIPSPQTKERFKLK
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERFKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           EVFEEAYERCRNAPVEGI+FTLEDFHAALEKYDFDSE+GTKVKGTVFCTDNNGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLP+QEACIHRIKHVEEAGIFPGLREEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           KSTAEELLNKELPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 423
           QRIAQAEA+ARADMLRFQPE        SGLTLTTDGILGPITPELPVEGL LNDVPPAE
Sbjct: 361 QRIAQAEALARADMLRFQPE--------SGLTLTTDGILGPITPELPVEGLDLNDVPPAE 413

[Close]
BLAST of Lsi05G014050 vs. NCBI nr
Match: gi|449459770|ref|XP_004147619.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus])

HSP 1 Score: 696.4 bits (1796), Expect = 3.0e-197
Identity = 368/421 (87.41%), Postives = 379/421 (90.02%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MASMAQQFTGLR  PLSSSRLSKPFSS+H  NK+RSLPVQAAVIS PIPSPQT+ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           EVFEEAYERCRNAPVEGI+FTLEDFHAALEKYDFDSE+GTKVKGTVFCTDNNGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLP+QEACIHRIKHVEEAG+FPGLREEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           KS AEELL+KELPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 423
           QRIAQAEA+ARADMLRFQPE        SGLTLTTDGILGPITPELPVEGL LNDVPPAE
Sbjct: 361 QRIAQAEALARADMLRFQPE--------SGLTLTTDGILGPITPELPVEGLDLNDVPPAE 413

[Close]
BLAST of Lsi05G014050 vs. NCBI nr
Match: gi|700202052|gb|KGN57185.1| (hypothetical protein Csa_3G168960 [Cucumis sativus])

HSP 1 Score: 660.2 bits (1702), Expect = 2.4e-186
Identity = 353/417 (84.65%), Postives = 366/417 (87.77%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MASMAQQFTGLR  PLSSSRLSKPFSS+H  NK+RSLPVQAAVIS PIPSPQT+ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           EVFEEAYERCRNAPVEGI+FTLEDFHAALEKYDFDSE+GTKVKGTVFCTDNNGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLP+QEACIHRIKHVEEAG+FPGLREEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGKKSTAEE-----------------------LLNKELPLKFVEVDEEQS 268
           RQLQAEDVVVKGK   A +                       L+   LP +      EQS
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTVMLIFHFLPPQLSIGYIEQS 240

Query: 269 RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA 328
           RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA
Sbjct: 241 RLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIA 300

Query: 329 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 388
           TVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA
Sbjct: 301 TVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 360

Query: 389 QAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAEE 423
           QAEA+ARADMLRFQPE        SGLTLTTDGILGPITPELPVEGL LNDVPPAEE
Sbjct: 361 QAEALARADMLRFQPE--------SGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 409

[Close]
BLAST of Lsi05G014050 vs. NCBI nr
Match: gi|720047604|ref|XP_010270863.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 611.7 bits (1576), Expect = 9.7e-172
Identity = 332/421 (78.86%), Postives = 353/421 (83.85%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MAS+AQQF GLR  PL SSR SKP S +  Q    S  V A  IS+     QTKER KLK
Sbjct: 1   MASLAQQFGGLRCPPLPSSRFSKPISQKP-QKATFSRVVSAVAISNA----QTKERQKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           ++FEEAYERCR AP EG++FTLEDFH AL+KYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  DMFEEAYERCRTAPTEGVSFTLEDFHNALDKYDFNSEIGTKVKGTVFCTDTNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLPVQE CIH+IKHVEEAGI PGLREEFVIIGENEADDSLILSLRSIQY+LAWERC
Sbjct: 121 KSSAYLPVQETCIHKIKHVEEAGIVPGLREEFVIIGENEADDSLILSLRSIQYELAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           KSTAEELL+KELPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKIVGGNRGGVVAIVEGLRGFVPFSQISTKSTAEELLDKELPLKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLH+SQISHDR+
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHISQISHDRV 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDI+TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 423
           QRIAQAEAMARADMLRFQPE        SGLTL++DGILGP+T ELPVEGL L+DVP AE
Sbjct: 361 QRIAQAEAMARADMLRFQPE--------SGLTLSSDGILGPLTQELPVEGLDLSDVPSAE 408

[Close]
BLAST of Lsi05G014050 vs. NCBI nr
Match: gi|225432062|ref|XP_002280604.1| (PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera])

HSP 1 Score: 609.8 bits (1571), Expect = 3.7e-171
Identity = 326/421 (77.43%), Postives = 354/421 (84.09%), Query Frame = 1 

Query: 29  MASMAQQFTGLRSVPLSSSRLSKPFSSRHLQNKARSLPVQAAVISSPIPSPQTKERFKLK 88
           MA +AQQFTGLR  P+SSSRLSKPFS +  Q  +    V A  IS+     QTKER KLK
Sbjct: 1   MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNA----QTKERLKLK 60

Query: 89  EVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDNNGALVDITA 148
           E+FE+AYERCR AP EG++F+ +DF++AL+KYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  EMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITA 120

Query: 149 KSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERC 208
           KSSAYLPV EACIH+IKHVEEAGI PG+REEFVIIGENEADDSLILSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERC 180

Query: 209 RQLQAEDVVVKGK---------------------------KSTAEELLNKELPLKFVEVD 268
           RQLQAEDVVVKGK                           K+TAEELL+KELP+KFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVD 240

Query: 269 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 328
           EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 329 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 388
           SDIATVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 389 QRIAQAEAMARADMLRFQPEDIVLDIPASGLTLTTDGILGPITPELPVEGLYLNDVPPAE 423
           QRIAQAEAMARADMLRFQPE        SGLTL +DGILGP++ +LP EGL L+DVPPAE
Sbjct: 361 QRIAQAEAMARADMLRFQPE--------SGLTLNSDGILGPVSADLPAEGLDLSDVPPAE 409

The following BLAST results are available for this feature:
BLAST of Lsi05G014050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR1_SPIOL3.5e-16976.3030S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1[more]
RPS1_ARATH8.0e-15871.8730S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=... [more]
RS1_SYNP61.7e-6747.3030S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
RS1A_SYNY33.0e-6446.6030S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
RR1_PYRYE6.6e-3534.2330S ribosomal protein S1, chloroplastic OS=Pyropia yezoensis GN=rps1 PE=3 SV=2[more]
BLAST of Lsi05G014050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5E7_CUCSA1.7e-18684.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168960 PE=4 SV=1[more]
D7SYG9_VITVI2.6e-17177.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00450 PE=4 SV=... [more]
A0A0J8CTT9_BETVU2.9e-17077.59Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059770 PE=4 S... [more]
A0A059B550_EUCGR1.6e-16876.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04084 PE=4 SV=1[more]
M5XQU6_PRUPE4.6e-16877.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006438mg PE=4 SV=1[more]
BLAST of Lsi05G014050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G30510.14.5e-15971.87 ribosomal protein S1[more]
AT3G23700.12.9e-1737.70 Nucleic acid-binding proteins superfamily[more]
AT1G71720.19.8e-1331.91 Nucleic acid-binding proteins superfamily[more]
AT5G14580.18.3e-1236.94 polyribonucleotide nucleotidyltransferase, putative[more]
AT4G29060.11.0e-0936.84 elongation factor Ts family protein[more]
BLAST of Lsi05G014050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076992|ref|XP_008438974.1|2.9e-20089.07PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo][more]
gi|449459770|ref|XP_004147619.1|3.0e-19787.41PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis sativus][more]
gi|700202052|gb|KGN57185.1|2.4e-18684.65hypothetical protein Csa_3G168960 [Cucumis sativus][more]
gi|720047604|ref|XP_010270863.1|9.7e-17278.86PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera][more]
gi|225432062|ref|XP_002280604.1|3.7e-17177.43PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008150 biological_process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009735 response to cytokinin
biological_process GO:0006412 translation
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009902 chloroplast relocation
biological_process GO:0015995 chlorophyll biosynthetic process
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G014050.1Lsi05G014050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003029S1 domainPFAMPF00575S1coord: 263..333
score: 8.8
IPR003029S1 domainPROFILEPS50126S1coord: 127..197
score: 12.619coord: 265..333
score: 22
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 116..163
score: 1.0E-6coord: 221..253
score: 1.0E-6coord: 259..335
score: 1.5
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 122..221
score: 9.03E-12coord: 264..343
score: 6.49
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 263..333
score: 1.3E-25coord: 125..197
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 350..370
scor
NoneNo IPR availablePANTHERPTHR10724S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 68..422
score: 8.4E
NoneNo IPR availablePANTHERPTHR10724:SF7RIBOSOMAL PROTEIN S1-RELATEDcoord: 68..422
score: 8.4E