Carg25648 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25648
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S1
Location	Cucurbita_argyrosperma_scaffold_317 : 55752 .. 61414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCCTCCACCTTATCCAACCCAAAACCTTATCAGTTCTGTTTACAGAGTCGGGGCCTCAGAGGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCTTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCCGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTTATTTGCGTGTTCTTTTCGTTTTCTCTCTTGTAATTTTGTGTGGAAGGTATGTTCTGGAGTTGATTTTTTTTTTCTCTTTAATTTGATGTTGTGCGATTGCTTGTAGGAATTTGGAACTGTTTTGATAGTGTTGGATTATAGTTCGTTATGTGATTTTGTGTAATTTCTTGTTAATTACACTGGAATTTGGATATTGTGAACTTGAATGGTTTGTTAATTCGATTGTGTTCTGGGAAATGGAAGTGAAAATGCTTATGCGAATTGGAATGTATACTGATAGTGTCATCTTCGGGCATTTGAAGGAGATTGGACCATAATTTATGTAGTTTTCCTCTTCAGGTGAAAGGTACTGTGTTCTGTACGGATGCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAACGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGGTATTTCCATCCAATTTGTGGTTCTTTTGTTCATCTTTTTGTTTGAAGTATCGTTGGTCTAGACGTGTAATAAGAAACTATAAAGTACTATAACATTCCTGGTATCATTAATTTTAAATCACCACTAAACTCAAAAGTTTGAATTGTTGGCTTACTATGAACATAGGACTTCAACTTAGTTTTGATACTATGTTAAATCGCCACCAAACCCAATATTTTAGGCCGATAAATTGCAATAAATTTGATTTTTGTTTGATACTTAACAATTCATATGTAGCCATTCTTTTGTGTTCAATCTTCAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGGTATTTTCTATTAGCTATTAATGACTTTCACATTTTGAAAGATTTCCTCGCTTTATGTATATGTAATAGATTATAGTTTCTGTTGGAGCAAAGCATTTAGTTTCTCACAGTTGTTAATTGATGAATGGTTTTATTATTTACAAAGATCATGCTGATTTTCACTCCCTTCCCTTAACAAAGTATTGGATACCAACGATATACTCTTCTATTTTCTTTATGTGAATGCCTTTCCCTTTTGGTGTCAAGGACTATAGTAGTTTCCTTGATTTTAGTTATACACCGGCAATTAACATCATACCTCTTTTTTCATCATGTTCGTGCAATTATTCAGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTAGTTTAATGGCCTTCAAGTGATTTATAAGGCTTCTCACATTCATGTTCCCAAGTCTTACAATGAATTATTCTGGCATAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGTATTCTCTTTGCTAGTTATCCTTTTCTTTCATTTTGTACCAATGCTGATTTTTTTCGTAATACGTGCACAAGAACGTGGTTGTGGTCTTTCTGCTACATTGTTACCATAATGATAAATTTGCAAATTTTCATATGCCGAAGTTCTTGTGCTATGGTGGGGTAGAGGAAACTACTAACTAATGCTAATTTGCCTTCATCCCTGGTAGCATGTGCTTCTTTCTTGTTTTCCGCACTTTAAAACCATGATTATATCAGACTTCTCTTATAGATTTTTGGTGGTTATCCCTTGAATGTTGAAAACAAAACCTAGCATCATATGGAGTAATGCTTGTAAAGCTCTATTTTTGTATATTGGATATAAAAGGTAGTAACTATTTTGTAAATAGAGAGATATTAGAGTTCCTGGATCCTCGTGTTTTGTATAGCCTCTTGTAAGAGCGCACTTGATAGGAGTATTTGTAATAGTTTTTGGAGGGGCCCTGTATGAAACCTCCTGTGGCCTCAGTTGGGGTAAAACCTTATCTTCATTTTTTTTTTCCAATTCCGAGTTCATTTCCTATCAAATAGTAGACTGAAAAAGAAGGTAAAAAGATGAAAAATAGCTAGAGGTATATTGTAACTATAATTTTGTTTCTATTTACAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGGTACTTCACAGCGATCTATCCTCGAGATTTCTAAACTATACCAAGTTAATGATAAATGCAACTAAATTTTACATGCAGTAGTTCTAAACCATAATATGGGAAGTTCATCGGTTCCTTTGCCCAAAAAAAAAAAAAAAAGAAATCCTTTCTACTTCATTGGGTACTTGAAATGTTGGATGAAAGTCCAATTTTGCACTTGTGGACCGTTAGCAGATATTGTCCTTTTTGGACTTTTCCTTTCGTGTTTTCCCTCAAGGGTTTTAAAACGCGTCTGTTAGGGAGAGATTTTCACACCTTTATAAAGAATGTTTCGTTTTTCTCCTCGATCAAGGGGATCTCACATTGCAAACTCCCTTTATTAACCAACAACTTGATAAACAATCTACATCAATACTCATTCTTTTTATGTGTCAAATAGAAAGACAATGATGTAGAACTATAGAGTAGAGAAAGGAATGTCATCATTGATTATGAAATGACAATGGGCTGTACACTTTTGGATATTCTTATATTTTTTGGTTGATATCCTATGATTTATGAGGATTTCTATAAGATATTGTTGGATACTCCTATAATTCATAAGTGTATTAAGCATAACTGTTGGACTAGTTAAAAGTATCCTTTATAAGATATTAGAAGTGTTCATAACAATACTTTTTCATTTCCAATGAAGTGCTATTAAGTTCTTTTTCGAAGGTTCTTATGGAAATAGTCCTTCATGCTGTGGATTGTTGGGAGAGGAGTCCCACGTCAGCTAGTGAAGGAGTTGATCATGGGTTTATAAATAAGAAATATATCTCCATTGGTATGAGGCCTTTAGAGGAAACCAAAAGTAAAGCCATGAAAGCTTATGCTCAAAGTGGAAGCCATGAGAGCTTATGCTCAAAGTGGACAATACCATATCATTGTAGAGGTCTGTGATTCGTAACACTTCACAAGAAATTAGTGCTCTCTGATGTCATTCAAAATTAAGTACTCACTCATGCTATCAGAAGCCAGCATTGAATTGGTTATTCAGATATCGAATCTTGTTCTCAATCTTCTGTGATCCTTCATTTCTCTTTGCAGCGGACTTTATATCTTTATATCGTTGAATTTGAACCTAAATGGTGACTTGTTTTCTTAACCATACAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTCCCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGCTGTGTTCTGTACACTGTTTCAAATTGTACACAGAGGTCAGCCCTTGTAATTTGGTACGCAACTTAGCTCTTCATGTCGTAGCTTACTATTGAATGCTTAATGAAAGCCTTGCCTCTTCATTTTCATTCTCTACTTTTTGTTCCATTGGTTTCGGCATGGAAAATGAAAATTTGTTTGATCGACACTGTTATATTCCATTCTAGTTGATGTTGGAAAGAATTCCTCTAAGCTTTATGTATTAATGAATGTATTTTTACTCAACTCGAACACTTCTTTTTCGATTTTTGTTAATGGCTAGCCACGAGAGTTAACTAAAAAAGCTTCGAGAGATCTTCGATAGTATCTTTTTTCCCCTTAAAAAGCTTTTATTGAAGTGATTTTAACTTAAAAGACTCGTGTGTTTGGTTATATCTTCTTAAACATGATTTTAATCTCCATTATGGGAAGAAAGGAGTGACCTTGACAATCCGGGAAAAAACCTCTTGCTATTTGCTTACGCAGTCTTAACATAGGCAATCTTGATATCACGAGCGTGTCGTATGCTAAAATGGTTGAGAAAGTACTTTGAGGAGAGTTATTGCTAGCATTAGTTATTTAGCTAAAAATGGGTAGAAAAATCTCCATATCTCAGAACTTTTATACTCATATGTCACGGTGGTCACCTATTCAGGAGTTAATATCTTACGAGTCAAGTTAACAATCAAATACATTTGAGAATTAAGCCGTTCAAGCCGACAAAATTTAAGTTGTACACATTTGAGCGAAAGTTCTAGATTGAATTGAGACGATGAATCACAAGACAAACGAGCTTCGACCATCCATTGCATTGGAGATTTGTTTTTGGATTGGGCCATTCACCACCAAACATCCTTTGTGTGATGGTAGACCATGTGAGGCCACCATCTTACCTCCTTGTGAACTTCACACTATAAGATAATGTTGTTTTTTTCCTCCTCAAATATGGGCTTACCATCCCTTTGTCCTTCGATATTTTAGGATATTTATCCATTTTTTTTAATAGAATTAAATTATTAAATACACCTTACATACTAATTTTTTTTTAATTTAAAAAATAAGTTTTAACTGTTAGTTTTGGATAGAAACCGCTAATATTTTGTTTCAAAATCACCATTTGACCTTTTAGAAACGTTTCAAAAATAGATTTTTATTTATTTTTTTTAAAAAAATTCAAAAATATATTACGGTAGTATTATGATTAAAAAATACTCTTACACTATAAAAAATAATATTAAAAAACACGTATGTATATTGATTTTTTTTTTTTTTTTTTAAAATAAAGATTAAATGTGTTAAAGAATATATTTTTTTTTATTAATTTAATATTTTAAATTTCCAAAATATACGCAGCCATCGACCAAATTTACAAACCAAATTATTATTCTATTTAGGGGTTCGGTCAGAGGCAGGAAGAAAGGAAGGTTAGAAACGCCCATTTCGATCCTCCACTGTATAGAGCCTCTGTAG

mRNA sequence

ATTTCCTCCACCTTATCCAACCCAAAACCTTATCAGTTCTGTTTACAGAGTCGGGGCCTCAGAGGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCTTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCCGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTGAAAGGTACTGTGTTCTGTACGGATGCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAACGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTCCCTCCAGCTGAAGAGGGTTCGGTCAGAGGCAGGAAGAAAGGAAGGTTAGAAACGCCCATTTCGATCCTCCACTGTATAGAGCCTCTGTAG

Coding sequence (CDS)

ATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCTTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCCGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACAGGTGAAGGAGCGTTTCAAGCTCAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTGAAAGGTACTGTGTTCTGTACGGATGCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAACGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCAACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTCTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATCGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAAAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTCCCTCCAGCTGAAGAGGGTTCGGTCAGAGGCAGGAAGAAAGGAAGGTTAGAAACGCCCATTTCGATCCTCCACTGTATAGAGCCTCTGTAG

Protein sequence

MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEEGSVRGRKKGRLETPISILHCIEPL

Homology

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BLAST of Carg25648 vs. NCBI nr
Match: XP_022935757.1 (30S ribosomal protein S1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 799.3 bits (2063), Expect = 6.6e-228
Identity = 413/413 (100.00%), Postives = 413/413 (100.00%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK
Sbjct: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA
Sbjct: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 413

[Close]

BLAST of Carg25648 vs. NCBI nr
Match: XP_023540263.1 (30S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 796.2 bits (2055), Expect = 5.6e-227
Identity = 410/413 (99.27%), Postives = 412/413 (99.76%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQFNGLRCAPLSSSRLSKPFS+RHLQNRARSLPVQAAVITSPIPSPQVKERFKLK
Sbjct: 1   MASMAQQFNGLRCAPLSSSRLSKPFSTRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTD NGALVDITA
Sbjct: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDGNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAG+YPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGVYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 413

[Close]

BLAST of Carg25648 vs. NCBI nr
Match: XP_022972194.1 (30S ribosomal protein S1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 795.4 bits (2053), Expect = 9.6e-227
Identity = 411/413 (99.52%), Postives = 412/413 (99.76%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSP VKERFKLK
Sbjct: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPLVKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTD+NGALVDITA
Sbjct: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 413

[Close]

BLAST of Carg25648 vs. NCBI nr
Match: XP_008438974.1 (PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo])

HSP 1 Score: 757.7 bits (1955), Expect = 2.2e-215
Identity = 384/413 (92.98%), Postives = 404/413 (97.82%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRC PLSSSRLSKPFSS+HL N++RSLPVQAAVI+ PIPSPQ KERFKLK
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAGI+PGLR+EFVIIGENE+DDSL+LSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELL KE+PLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 413

[Close]

BLAST of Carg25648 vs. NCBI nr
Match: XP_022138241.1 (30S ribosomal protein S1, chloroplastic [Momordica charantia])

HSP 1 Score: 757.7 bits (1955), Expect = 2.2e-215
Identity = 385/413 (93.22%), Postives = 405/413 (98.06%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRCAPLSSSRLS PFS RHLQN+ARSLPV AAVI+SPIPSPQ KERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSTPFSPRHLQNKARSLPVHAAVISSPIPSPQTKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           E+FE+AYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTKVKGTVFCTDANGALVDITA
Sbjct: 61  EVFEDAYERCRNAPVEGISFTLEDFHAALEKYDFDSEMGTKVKGTVFCTDANGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLP+QEACIHRIKHVEEAGI+PG+R+EFVIIGENEADDSLVLSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPVQEACIHRIKHVEEAGIFPGVREEFVIIGENEADDSLVLSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIS+KSTAEELL KE+PLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISSKSTAEELLNKELPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIA AEAMARADML+FQPESGLTLTTDGILGP+TPELPVEGLDL+DVPPAEE
Sbjct: 361 QRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLSDVPPAEE 413

[Close]

BLAST of Carg25648 vs. TAIR10
Match: AT5G30510.1 (ribosomal protein S1)

HSP 1 Score: 630.2 bits (1624), Expect = 9.7e-181
Identity = 327/416 (78.61%), Postives = 378/416 (90.87%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPL-SSSRLSKPFSSRHLQNRARSL--PVQAAVITSPIPSPQVKERF 60
           MAS+AQQF+GLRC+PL SSSRLS+  S    QN++ S+   + AAV  S   S Q KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+VKGTVF TDANGALVD
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVD 120

Query: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180
           I+AKSSAYL +++ACIHRIKHVEEAGI PG+ +EFVIIGENE+DDSL+LSLR+IQY+LAW
Sbjct: 121 ISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAW 180

Query: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240
           ERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+K+ AEELL KEIPLKFV
Sbjct: 181 ERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFV 240

Query: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300
           EVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAFIDIGG+NGLLHVSQISH
Sbjct: 241 EVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360
           DR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDL--NDVPPA 412
           TFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP +G+DL  +D+P A
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSA 413

[Close]

BLAST of Carg25648 vs. TAIR10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-22
Identity = 65/205 (31.71%), Postives = 122/205 (59.51%), Query Frame = 0


Query: 165 VLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVP----FSQIST 224
           +LS R     +AW R RQ++  +  ++ K+ + N GG++  +EGLR F+P      +++T
Sbjct: 261 LLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNT 320

Query: 225 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 284
            +  +E + +   ++   ++E+++ L+LS +  VA  +  L  G+++ GTV  + PYGA 
Sbjct: 321 FTELKENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGTVVKILPYGAQ 380

Query: 285 IDIG--GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 344
           + +G    +GLLH+S I+  RI  ++ VLQ  +++KV+++       ++SLS   LE  P
Sbjct: 381 VKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEP 440

Query: 345 GDMIRNPKLVFEKAEEMAQTFRQRI 364
           G  I + + VF +AEEMA+ +R+++
Sbjct: 441 GLFISDREKVFTEAEEMAKKYREKM 462

[Close]

BLAST of Carg25648 vs. TAIR10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-20
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 177 WERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEE---------- 236
           W+  +         +G+V   N GG++     L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 237 -LLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIG 296
            L+  ++P+K V+ DEE  +L+LS + A+    +Q + +G V  G V S++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 297 ------GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
                  + GL+HVS++S D + D+  VL+ GD ++V++ + D+E+ R++LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]

BLAST of Carg25648 vs. TAIR10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-11
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 237 VEVDEEQSRLVLSNRKAVADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGVN 296
           + +D     +V  N+  +  +Q Q        L +G V  GTV S+K YGAF++  GG  
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702

Query: 297 GLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
           GLLH+S++SH+ +S ++ VL  G  +  M +  D  RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

[Close]

BLAST of Carg25648 vs. TAIR10
Match: AT4G29060.1 (elongation factor Ts family protein)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-09
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 264 GSVVIGTVQSLKPYGAFIDIGG-VNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDR 323
           G+   G V++++P+GAF+D G   +GL+HVSQ+S + + D+++V+  G  +KV ++  D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 324 ERGRVSLSTKKLEPTP 339
           E  R+SL+ ++ +  P
Sbjct: 196 ESKRISLTMRENDDPP 211

[Close]

BLAST of Carg25648 vs. Swiss-Prot
Match: sp|P29344|RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 664.5 bits (1713), Expect = 8.3e-190
Identity = 341/414 (82.37%), Postives = 382/414 (92.27%), Query Frame = 0


Query: 1   MASMAQQF-NGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKL 60
           MAS+AQQ   GLRC PLS+S LSKPFS +H   + R  P+ +AV  S   + Q +ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTL-KPRFSPIVSAVAVS---NAQTRERQKL 60

Query: 61  KEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDIT 120
           K++FE+AYERCRNAP+EG+SFT++DFH+A++KYDFNSE+G++VKGTVFCTDANGALVDIT
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 120

Query: 121 AKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWER 180
           AKSSAYLPL EACI+RIK+VEEAGI PG+R+EFVIIGENEADDSL+LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEV 240
           CRQLQAEDVVVKGK+V ANKGGVVA+VEGLRGFVPFSQIS+KS+AEELL KEIPLKFVEV
Sbjct: 181 CRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEV 240

Query: 241 DEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDR 300
           DEEQSRLV+SNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDR
Sbjct: 241 DEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360
           +SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 301 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           RQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP EGLDL+ VPPA E
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPAVE 410

[Close]

BLAST of Carg25648 vs. Swiss-Prot
Match: sp|Q93VC7|RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 1.7e-179
Identity = 327/416 (78.61%), Postives = 378/416 (90.87%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPL-SSSRLSKPFSSRHLQNRARSL--PVQAAVITSPIPSPQVKERF 60
           MAS+AQQF+GLRC+PL SSSRLS+  S    QN++ S+   + AAV  S   S Q KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+VKGTVF TDANGALVD
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVD 120

Query: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180
           I+AKSSAYL +++ACIHRIKHVEEAGI PG+ +EFVIIGENE+DDSL+LSLR+IQY+LAW
Sbjct: 121 ISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAW 180

Query: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240
           ERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+K+ AEELL KEIPLKFV
Sbjct: 181 ERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFV 240

Query: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300
           EVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAFIDIGG+NGLLHVSQISH
Sbjct: 241 EVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360
           DR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDL--NDVPPA 412
           TFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP +G+DL  +D+P A
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSA 413

[Close]

BLAST of Carg25648 vs. Swiss-Prot
Match: sp|P46228|RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 299.7 bits (766), Expect = 5.4e-80
Identity = 149/294 (50.68%), Postives = 213/294 (72.45%), Query Frame = 0


Query: 71  RNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITAKSSAYLPLQE 130
           ++ P   I FT EDF + +++YD++   G  V GTVF  +  GAL+DI AK++A+LP+QE
Sbjct: 4   QDIPAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQE 63

Query: 131 ACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVV 190
             I+R++  EE  + P   +EF I+ +   D  L LS+R I+Y  AWER RQLQ ED  V
Sbjct: 64  MSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATV 123

Query: 191 KGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSN 250
           + +V   N+GG +  +EGLRGF+P S IST+   E+L+ +E+PLKF+EVDE+++RLVLS+
Sbjct: 124 RSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSH 183

Query: 251 RKAVADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQP 310
           R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGGV+GLLH+S+ISHD I    +V   
Sbjct: 184 RRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNV 243

Query: 311 GDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 364
            D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++
Sbjct: 244 NDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKL 296

[Close]

BLAST of Carg25648 vs. Swiss-Prot
Match: sp|P73530|RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.2e-76
Identity = 150/312 (48.08%), Postives = 215/312 (68.91%), Query Frame = 0


Query: 78  ISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITAKSSAYLPLQEACIHRIK 137
           I FT+EDF + ++KYD++   G  V GTVF  ++ GAL+DI AK++AY+P+QE  I+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 138 HVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDA 197
             EE  + P   +EF I+ +   D  L LS+R I+Y  AWER RQLQAED  V+  V   
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 198 NKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADS 257
           N+GG +  +EGLRGF+P S IS +   E+L+ +++PLKF+EVDEE++RLVLS+R+A+ + 
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 258 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVM 317
           +   L +  VV+G+V+ +KPYGAFIDIGGV+GLLH+S+ISHD I    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 318 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLK 377
           I+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ+      +A A  + 
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQK-----RLAEAQGIP 309

Query: 378 FQPESGLTLTTD 389
           ++P + +  T D
Sbjct: 310 YEPPTSVDDTDD 315

[Close]

BLAST of Carg25648 vs. Swiss-Prot
Match: sp|O33698|RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-44
Identity = 97/282 (34.40%), Postives = 166/282 (58.87%), Query Frame = 0


Query: 83  EDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITAKSSAYLPLQEACIHRIKHVEEA 142
           +DF  A+E    +S+ G  V+G V     +GA +DI  K+ A+LP +EA +H +  + EA
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EA 71

Query: 143 GIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGV 202
            +      EF++I +   D  + +SLR++  + AW R  +LQ     V+ KV  +NKGGV
Sbjct: 72  HLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGV 131

Query: 203 VAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQA-QL 262
            A +EGLR F+P S ++ K   + L  K + + F+EV+    +LVLS R+A   +   ++
Sbjct: 132 TADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREI 191

Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHD 322
            +G ++ G V  LKP+G F+D+GG   LL ++QIS   ++D+  + + GD ++ ++++ D
Sbjct: 192 EVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAID 251

Query: 323 RERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 364
             +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct: 252 NTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]

BLAST of Carg25648 vs. TrEMBL
Match: tr|A0A1S3AXL6|A0A1S3AXL6_CUCME (30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 PE=4 SV=1)

HSP 1 Score: 757.7 bits (1955), Expect = 1.5e-215
Identity = 384/413 (92.98%), Postives = 404/413 (97.82%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRC PLSSSRLSKPFSS+HL N++RSLPVQAAVI+ PIPSPQ KERFKLK
Sbjct: 1   MASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAGI+PGLR+EFVIIGENE+DDSL+LSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELL KE+PLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDRI
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 413

[Close]

BLAST of Carg25648 vs. TrEMBL
Match: tr|A0A0A0L5E7|A0A0A0L5E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168960 PE=4 SV=1)

HSP 1 Score: 714.5 bits (1843), Expect = 1.4e-202
Identity = 363/413 (87.89%), Postives = 390/413 (94.43%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MASMAQQF GLRCAPLSSSRLSKPFSS+H  N++RSLPVQAAVI+ PIPSPQ +ERFKLK
Sbjct: 1   MASMAQQFTGLRCAPLSSSRLSKPFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           E+FEEAYERCRNAPVEGISFT+EDFH+A+EKYDF+SE+GTKVKGTVFCTD NGALVDITA
Sbjct: 61  EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLPLQEACIHRIKHVEEAG++PGLR+EFVIIGENE+DDSL+LSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQIST       L  ++ + ++   
Sbjct: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTVMLIFHFLPPQLSIGYI--- 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
            EQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDRI
Sbjct: 241 -EQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIA AEA+ARADML+FQPESGLTLTTDGILGP+TPELPVEGLDLNDVPPAEE
Sbjct: 361 QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 409

[Close]

BLAST of Carg25648 vs. TrEMBL
Match: tr|A0A2P5F5Q5|A0A2P5F5Q5_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_110260 PE=4 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 6.4e-195
Identity = 355/415 (85.54%), Postives = 386/415 (93.01%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQ-NRARSLPVQAAVITSPIPSPQVKERFKL 60
           MAS+AQQF GLRC PLSSS LSKPFS +  Q ++   LP+ +AV    I + Q KER KL
Sbjct: 1   MASLAQQFTGLRCPPLSSSHLSKPFSPKQPQTHKPTLLPIVSAV---AISNAQTKERLKL 60

Query: 61  KEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDIT 120
           KE+FEEAYERCR AP+EGISF+V+DFHSAIEKYDFNSE+GTKVKGTVFCTD NGALVDIT
Sbjct: 61  KELFEEAYERCRTAPMEGISFSVDDFHSAIEKYDFNSEIGTKVKGTVFCTDNNGALVDIT 120

Query: 121 AKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWER 180
           AKSSAYLPLQEA IHR+KHVEEAGI PGL++EFVIIGENEADDSL+LSL++IQYDLAWER
Sbjct: 121 AKSSAYLPLQEASIHRLKHVEEAGIVPGLKEEFVIIGENEADDSLILSLKNIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEV 240
           CRQLQAEDVVVKGKVV ANKGGVVA+VEGLRGFVPFSQISTKSTAEELL KE+PLKFVEV
Sbjct: 181 CRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISTKSTAEELLDKELPLKFVEV 240

Query: 241 DEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDR 300
           DEEQSRLVLSNRKA+ADSQAQLGIGSVV+GTVQSLKPYGAFIDIGG+NGLLHVSQISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360
           +SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 301 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEEG 415
           RQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP EGLDL+DVP AE+G
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSDVPAAEDG 412

[Close]

BLAST of Carg25648 vs. TrEMBL
Match: tr|A0A2P5CUZ5|A0A2P5CUZ5_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120640 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 2.4e-194
Identity = 353/415 (85.06%), Postives = 386/415 (93.01%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQ-NRARSLPVQAAVITSPIPSPQVKERFKL 60
           MAS+AQQF GLRC PLSSS LSKPFS +  Q ++   LP+ +AV    I + Q KER KL
Sbjct: 1   MASLAQQFTGLRCPPLSSSHLSKPFSPKQPQTHKPTLLPIVSAV---AISNAQTKERLKL 60

Query: 61  KEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDIT 120
           KE+FE+AYERCR AP+EG+SF+V+DFHSAIEKYDFNSE+GTKVKGTVFCTD NGALVDIT
Sbjct: 61  KELFEDAYERCRTAPMEGLSFSVDDFHSAIEKYDFNSEIGTKVKGTVFCTDNNGALVDIT 120

Query: 121 AKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWER 180
           AKSSAYLPLQEA IHR+KHVEEAGI PGL++EFVIIGENEADDSL+LSL++IQYDLAWER
Sbjct: 121 AKSSAYLPLQEASIHRLKHVEEAGIVPGLKEEFVIIGENEADDSLILSLKNIQYDLAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEV 240
           CRQLQAEDVVVKGKVV ANKGGVVA+VEGLRGFVPFSQISTKSTAEELL KE+PLKFVEV
Sbjct: 181 CRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISTKSTAEELLDKELPLKFVEV 240

Query: 241 DEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDR 300
           DEEQSRLVLSNRKA+ADSQAQLGIGSVV+GTVQSLKPYGAFIDIGG+NGLLHVSQISHDR
Sbjct: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360
           +SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 301 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEEG 415
           RQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP EGLDL+DVP AE+G
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSDVPAAEDG 412

[Close]

BLAST of Carg25648 vs. TrEMBL
Match: tr|A0A200R1Z5|A0A200R1Z5_9MAGN (Ribosomal protein S1 OS=Macleaya cordata OX=56857 GN=BVC80_1543g154 PE=4 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 2.5e-191
Identity = 345/413 (83.54%), Postives = 382/413 (92.49%), Query Frame = 0


Query: 1   MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPQVKERFKLK 60
           MAS+AQQF GLRC PLSSS LSKPFSS+    +    P+ +AV    I + Q KER +LK
Sbjct: 1   MASLAQQFAGLRCPPLSSSHLSKPFSSK--PQKTIFSPIVSAV---AISNAQTKERQRLK 60

Query: 61  EIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDANGALVDITA 120
           ++FEEAYERCR  P+EG+ FTV+DFH+A+EKYD+NSE+GT+VKGTVFCTD NGALVDITA
Sbjct: 61  DMFEEAYERCRTTPMEGVGFTVDDFHAALEKYDYNSEIGTRVKGTVFCTDNNGALVDITA 120

Query: 121 KSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERC 180
           KSSAYLP+QEACIH+IK+VEEAGI  GLR+EFVIIGEN+ADDSL+LSLRSIQYDLAWERC
Sbjct: 121 KSSAYLPVQEACIHKIKNVEEAGIVAGLREEFVIIGENQADDSLILSLRSIQYDLAWERC 180

Query: 181 RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVD 240
           RQLQAEDVVVKGK+V  NKGGVVA+VEGLRGFVPFSQISTKSTAEEL+ KE+PLKFVEVD
Sbjct: 181 RQLQAEDVVVKGKIVGGNKGGVVAIVEGLRGFVPFSQISTKSTAEELIDKELPLKFVEVD 240

Query: 241 EEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRI 300
           EEQSRLVLSNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDR+
Sbjct: 241 EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 300

Query: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360
           SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301 SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 361 QRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           QRIA AEAMARADML+FQPESGLTL++DGILGP+TP+LPVEGLDL+D+PPAEE
Sbjct: 361 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTPDLPVEGLDLSDIPPAEE 408

The following BLAST results are available for this feature:

BLAST of Carg25648 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935757.1	6.6e-228	100.00	30S ribosomal protein S1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023540263.1	5.6e-227	99.27	30S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972194.1	9.6e-227	99.52	30S ribosomal protein S1, chloroplastic [Cucurbita maxima]	[more]
XP_008438974.1	2.2e-215	92.98	PREDICTED: 30S ribosomal protein S1, chloroplastic [Cucumis melo]	[more]
XP_022138241.1	2.2e-215	93.22	30S ribosomal protein S1, chloroplastic [Momordica charantia]	[more]

BLAST of Carg25648 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G30510.1	9.7e-181	78.61	ribosomal protein S1	[more]
AT1G71720.1	3.1e-22	31.71	Nucleic acid-binding proteins superfamily	[more]
AT3G23700.1	5.0e-20	31.67	Nucleic acid-binding proteins superfamily	[more]
AT5G14580.1	4.3e-11	36.04	polyribonucleotide nucleotidyltransferase, putative	[more]
AT4G29060.1	5.2e-09	35.53	elongation factor Ts family protein	[more]

BLAST of Carg25648 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P29344\|RR1_SPIOL	8.3e-190	82.37	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
sp\|Q93VC7\|RPS1_ARATH	1.7e-179	78.61	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
sp\|P46228\|RS1_SYNP6	5.4e-80	50.68	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
sp\|P73530\|RS1A_SYNY3	1.2e-76	48.08	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
sp\|O33698\|RS1_SYNE7	3.7e-44	34.40	30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN...	[more]

BLAST of Carg25648 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXL6\|A0A1S3AXL6_CUCME	1.5e-215	92.98	30S ribosomal protein S1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483907 ...	[more]
tr\|A0A0A0L5E7\|A0A0A0L5E7_CUCSA	1.4e-202	87.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168960 PE=4 SV=1	[more]
tr\|A0A2P5F5Q5\|A0A2P5F5Q5_9ROSA	6.4e-195	85.54	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_110260 PE=4 SV=1	[more]
tr\|A0A2P5CUZ5\|A0A2P5CUZ5_PARAD	2.4e-194	85.06	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120640 PE=4 SV=...	[more]
tr\|A0A200R1Z5\|A0A200R1Z5_9MAGN	2.5e-191	83.54	Ribosomal protein S1 OS=Macleaya cordata OX=56857 GN=BVC80_1543g154 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR003029	S1_domain
IPR022967	S1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25648-RA	Carg25648-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 97..169 e-value: 1.0E-6 score: 38.3 coord: 185..251 e-value: 7.5E-7 score: 38.8 coord: 262..332 e-value: 2.0E-25 score: 100.4
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 185..249 e-value: 1.1E-7 score: 32.0 coord: 262..332 e-value: 1.0E-20 score: 73.7
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 99..169 score: 12.574
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 264..332 score: 21.866
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 187..251 score: 14.329
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 260..340 e-value: 2.2E-23 score: 83.9
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 182..259 e-value: 2.4E-7 score: 32.5 coord: 81..181 e-value: 8.9E-10 score: 40.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..420
None	No IPR available	PANTHER	PTHR10724:SF9	SUBFAMILY NOT NAMED	coord: 77..370
None	No IPR available	PANTHER	PTHR10724	S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1	coord: 77..370
None	No IPR available	CDD	cd05687	S1_RPS1_repeat_ec1_hs1	coord: 99..169 e-value: 3.00076E-12 score: 61.0059
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 198..251 e-value: 1.85783E-15 score: 70.1803
None	No IPR available	CDD	cd05692	S1_RPS1_repeat_hs4	coord: 264..332 e-value: 2.72638E-30 score: 110.838
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 94..195
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 263..342
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 182..255

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25648	Cla021812	Watermelon (97103) v1	carwmB0738
Carg25648	Csa3G168960	Cucumber (Chinese Long) v2	carcuB0757
Carg25648	MELO3C006733	Melon (DHL92) v3.5.1	carmeB0736
Carg25648	ClCG05G006720	Watermelon (Charleston Gray)	carwcgB0718
Carg25648	CSPI03G15150	Wild cucumber (PI 183967)	carcpiB0774
Carg25648	Cucsa.252380	Cucumber (Gy14) v1	carcgyB0833
Carg25648	CmaCh06G015760	Cucurbita maxima (Rimu)	carcmaB1036
Carg25648	CmoCh06G015700	Cucurbita moschata (Rifu)	carcmoB1007
Carg25648	Lsi05G014050	Bottle gourd (USVL1VR-Ls)	carlsiB678
Carg25648	Cp4.1LG08g05330	Cucurbita pepo (Zucchini)	carcpeB1043
Carg25648	CsGy3G015300	Cucumber (Gy14) v2	carcgybB0736
Carg25648	MELO3C006733.2	Melon (DHL92) v3.6.1	carmedB0749
Carg25648	CsaV3_3G015350	Cucumber (Chinese Long) v3	carcucB0777
Carg25648	Cla97C05G088350	Watermelon (97103) v2	carwmbB0776
Carg25648	Bhi01G000802	Wax gourd	carwgoB0876

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25648	Silver-seed gourd	carcarB317
Carg25648	Cucurbita maxima (Rimu)	carcmaB1035
Carg25648	Cucurbita moschata (Rifu)	carcmoB1006
Carg25648	Cucurbita pepo (Zucchini)	carcpeB1042