Cp4.1LG08g03250 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g03250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAcidic leucine-rich nuclear phosphoprotein 32-related protein 2
LocationCp4.1LG08 : 2189922 .. 2191183 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGTAAACGCCTTCTTGTATCGTTGTTTTAATTCCTTCTCCGATCTCGACAGCGCACCGCTCCATCGCCCATTTTCTCTTTGGGGTTTGGAGGCGATTTTATTTTCTGTCACTTTCTCGGGAATCTTTCGATTCTAAGCCTTATTTTCTTTGTTTGGTTCAAATTTTAGATCGAGGGGTTTTTGATGGGGTTGTTGGGTTCGTAAATCTTGAACCCATGAGCCCTAACTCGGTTCTGGATTTGTGATTTTTGCGATGATTCGGTTCAGAAATCTCAAATTTGGGTTTGATTTTTGATCTTTGGTGAACTATGGGTGGCGATTCTAAGGATGTTGAGGAGACTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAAAGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTTGATTGGTTTCCTTTTATGTTGGTTTTTTTTGGTATGTTTTATGTTGTTTGGGGAAGATGGGCTGTCTGTCATGCTGTCTGTCATGCTGTCTTATGCTGTCTTATGAGCTGAAATGATCTGTTCTTTGCTTGTTCTTCGTGAAATCGCTCGTTTAGAATGACTTTTTAAGTGCTTAAACGCTTAGAAAATGAGTTGAAATAAGTCTTTAGTTTGATGTCATGAGCTTAACGAGATGGGGTCGATTTTGAATTCGGTGTCTTTGCGTGTTTTTGCAGCGATGTGAGCGACTCGGGGGACGAGGAGGATGATTCTTGCAGCTGTATAATTATGTAGATTATTACATCAAATATGTGTATAATGACAGGAAGCTGAGAGTCATTGGTGGTATTTCTGACTGTATACTGATTGCCTTACTACGACGACGAGTTCTCGAAGATTGACGGGTTAATATGTCGATATTCCTTGCGGTGTTTGGTGATGTGTGTTCAGGGATATCTTGTACTGTTTTGGTTTTCGAGTTTGTAAGATCATATCGATGATGCGAATAATGATGTTATTATAACAAATATTCAGATTAGTTGAGCGTTGTACTATTGTTTATACCTCTAGATCTTGAGAGGTCGTGAACGTTTTTGTTTGGTTTAATAACAAATTTAGTCGATTCGTAAAAAGTTAGAATTTAGTCCCTAAAGTTTTAAATGTCATAATTAGTCTTTAAACTATACT

mRNA sequence

CAAAGTAAACGCCTTCTTGTATCGTTGTTTTAATTCCTTCTCCGATCTCGACAGCGCACCGCTCCATCGCCCATTTTCTCTTTGGGGTTTGGAGGCGATTTTATTTTCTGTCACTTTCTCGGGAATCTTTCGATTCTAAGCCTTATTTTCTTTGTTTGGTTCAAATTTTAGATCGAGGGGTTTTTGATGGGGTTGTTGGGTTCGTAAATCTTGAACCCATGAGCCCTAACTCGGTTCTGGATTTGTGATTTTTGCGATGATTCGGTTCAGAAATCTCAAATTTGGGTTTGATTTTTGATCTTTGGTGAACTATGGGTGGCGATTCTAAGGATGTTGAGGAGACTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAAAGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGATGATTCTTGCAGCTGTATAATTATGTAGATTATTACATCAAATATGTGTATAATGACAGGAAGCTGAGAGTCATTGGTGGTATTTCTGACTGTATACTGATTGCCTTACTACGACGACGAGTTCTCGAAGATTGACGGGTTAATATGTCGATATTCCTTGCGGTGTTTGGTGATGTGTGTTCAGGGATATCTTGTACTGTTTTGGTTTTCGAGTTTGTAAGATCATATCGATGATGCGAATAATGATGTTATTATAACAAATATTCAGATTAGTTGAGCGTTGTACTATTGTTTATACCTCTAGATCTTGAGAGGTCGTGAACGTTTTTGTTTGGTTTAATAACAAATTTAGTCGATTCGTAAAAAGTTAGAATTTAGTCCCTAAAGTTTTAAATGTCATAATTAGTCTTTAAACTATACT

Coding sequence (CDS)

ATGGGTGGCGATTCTAAGGATGTTGAGGAGACTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAAAGGCGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGATGATTCTTGCAGCTGTATAATTATGTAG

Protein sequence

MGGDSKDVEETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM
BLAST of Cp4.1LG08g03250 vs. TrEMBL
Match: A0A0A0L701_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.1e-34
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 3  GDSKDV----EETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    E+T+DS AAGEVGD   GE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Cp4.1LG08g03250 vs. TrEMBL
Match: A0A061EME1_THECC (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cacao GN=TCM_020968 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 4  DSKDVE----ETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDS 63
          D+KDV     + + ++ + ++ D   GE+YSESN+LLPP++GGMSRK  K R KV+W D 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          NGN L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

BLAST of Cp4.1LG08g03250 vs. TrEMBL
Match: V7BMK7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G271300g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = 1

Query: 4  DSKDVEETV----------DSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMK 63
          DSKDV   +           ++ + +V D   G+D S+SN+LLPPRRGGMSR S+K R K
Sbjct: 2  DSKDVNGCIMDKHKPVVVASTLGSEKVEDHVNGDDESDSNSLLPPRRGGMSRNSDKTRRK 61

Query: 64 VRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          V+W D NGN LAE+LE++PSDVSDS DE+ DSC C IM
Sbjct: 62 VQWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICTIM 99

BLAST of Cp4.1LG08g03250 vs. TrEMBL
Match: A0A0B2QZ08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.4e-18
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1

Query: 14 SVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILEFQPS 73
          S+   +V D   GED S+SN+LLPPRRGGMSR   K R KV+W D NGN LAE+LE++PS
Sbjct: 21 SLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKVQWNDRNGNKLAEVLEYEPS 80

Query: 74 DVSDSGDEEDDSCSCIIM 92
          DVSDS DE+ DSC C IM
Sbjct: 81 DVSDSEDEDSDSCICTIM 98

BLAST of Cp4.1LG08g03250 vs. TrEMBL
Match: K7LJ92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.3e-18
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1

Query: 4  DSKDVEETV---------DSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKV 63
          DSKD+   +          S+   +V D   GED S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          +W D NGN LAE+LE++PSDVSDS DE+ DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

BLAST of Cp4.1LG08g03250 vs. TAIR10
Match: AT2G33390.1 (AT2G33390.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 10 ETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILE 69
          + + S+ + E+ D    E+ SES  LLPPR+GGMSR ++K +  V+W D  G+NLAE+L 
Sbjct: 17 KAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWNDIKGDNLAEVLV 76

Query: 70 FQPSDVSDSGDEEDDSCSCIIM 92
          ++PS+VSD+ D++ DSC C IM
Sbjct: 77 YEPSEVSDTEDDDSDSCICTIM 98

BLAST of Cp4.1LG08g03250 vs. NCBI nr
Match: gi|449432518|ref|XP_004134046.1| (PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-33
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 3  GDSKDV----EETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    E+T+DS AAGEVGD   GE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Cp4.1LG08g03250 vs. NCBI nr
Match: gi|659076053|ref|XP_008438475.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 1

Query: 1  MGGDSKDV----EETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    E+T+DS AAGEVGD   GE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCS 88
           DSNGNNLAEILEFQPSDVSDSGDEE DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

BLAST of Cp4.1LG08g03250 vs. NCBI nr
Match: gi|659076051|ref|XP_008438474.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-24
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 1

Query: 1  MGGDSKDV----EETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    E+T+DS AAGEVGD   GE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQP 73
           DSNGNNLAEILEFQP
Sbjct: 61 NDSNGNNLAEILEFQP 76

BLAST of Cp4.1LG08g03250 vs. NCBI nr
Match: gi|590659807|ref|XP_007035229.1| (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 4  DSKDVE----ETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDS 63
          D+KDV     + + ++ + ++ D   GE+YSESN+LLPP++GGMSRK  K R KV+W D 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          NGN L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

BLAST of Cp4.1LG08g03250 vs. NCBI nr
Match: gi|645235204|ref|XP_008224162.1| (PREDICTED: uncharacterized protein LOC103323918 [Prunus mume])

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-19
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1

Query: 3  GDSKDVEETVDSVAAGEVGDSGKGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGN 62
          G   +  ET DS     V ++  G++ SESN+LLPPRRGGMSRK+NK R KV+W D NGN
Sbjct: 11 GCKTEKSETTDSQ---RVEENVNGDEDSESNSLLPPRRGGMSRKTNKTRRKVQWNDKNGN 70

Query: 63 NLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
           L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 71 KLVEVLEFEPSDVSDSDDEDADSCICIIM 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L701_CUCSA7.1e-3484.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1[more]
A0A061EME1_THECC1.3e-1956.52Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cac... [more]
V7BMK7_PHAVU3.2e-1854.08Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G271300g PE=4 SV=1[more]
A0A0B2QZ08_GLYSO5.4e-1862.82Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1[more]
K7LJ92_SOYBN9.3e-1854.64Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33390.11.3e-1547.56 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449432518|ref|XP_004134046.1|1.0e-3384.95PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus][more]
gi|659076053|ref|XP_008438475.1|2.1e-3183.52PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo][more]
gi|659076051|ref|XP_008438474.1|5.6e-2481.58PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo][more]
gi|590659807|ref|XP_007035229.1|1.9e-1956.52Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao... [more]
gi|645235204|ref|XP_008224162.1|7.1e-1960.67PREDICTED: uncharacterized protein LOC103323918 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009642 response to light intensity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03250.1Cp4.1LG08g03250.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401FAMILY NOT NAMEDcoord: 26..91
score: 3.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g03250Cp4.1LG03g09710Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g03250Watermelon (97103) v1cpewmB841
Cp4.1LG08g03250Watermelon (97103) v1cpewmB853
Cp4.1LG08g03250Melon (DHL92) v3.5.1cpemeB803
Cp4.1LG08g03250Melon (DHL92) v3.5.1cpemeB804
Cp4.1LG08g03250Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g03250Cucumber (Gy14) v2cgybcpeB452
Cp4.1LG08g03250Melon (DHL92) v3.6.1cpemedB944
Cp4.1LG08g03250Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g03250Silver-seed gourdcarcpeB0329
Cp4.1LG08g03250Silver-seed gourdcarcpeB1101
Cp4.1LG08g03250Silver-seed gourdcarcpeB1507
Cp4.1LG08g03250Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g03250Cucumber (Chinese Long) v3cpecucB1053
Cp4.1LG08g03250Wax gourdcpewgoB1100
Cp4.1LG08g03250Wax gourdcpewgoB1118
Cp4.1LG08g03250Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g03250Cucurbita pepo (Zucchini)cpecpeB284
Cp4.1LG08g03250Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g03250Cucurbita pepo (Zucchini)cpecpeB507
Cp4.1LG08g03250Cucumber (Gy14) v1cgycpeB1012
Cp4.1LG08g03250Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g03250Cucurbita maxima (Rimu)cmacpeB554
Cp4.1LG08g03250Cucurbita maxima (Rimu)cmacpeB650
Cp4.1LG08g03250Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g03250Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g03250Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g03250Cucurbita moschata (Rifu)cmocpeB599
Cp4.1LG08g03250Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g03250Wild cucumber (PI 183967)cpecpiB851
Cp4.1LG08g03250Wild cucumber (PI 183967)cpecpiB858
Cp4.1LG08g03250Cucumber (Chinese Long) v2cpecuB858
Cp4.1LG08g03250Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g03250Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g03250Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g03250Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g03250Watermelon (Charleston Gray)cpewcgB792