CmaCh00G006220 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G006220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAcidic leucine-rich nuclear phosphoprotein 32-related protein 2
LocationCma_Chr00 : 44508943 .. 44510124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCATTTTCTTTTTGGGGTTTGGAGGCGATTTTATTTTCTGTCACTTTCCCGGGAATCTATCGATTCTAAGCCTTATTTTCTTTGTTTGGTTCAAATTTTAGATCGAGGGTTTTAGTTTTGGAAGAGGGGTTTTTGATGGGGTTGTTGGGTTCATAAATTTTGAACCCATGAGCCCTAACACGGTTCTGGATTTGTGATTTTTGCCATGTTTCGGTTCAGAAATCTCAAATCTGGGTTTGATTTTTTGATCTTTGGTGAACTATGGGTGGCGATTCTAAGGATGTTCAGAAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTTTATTGCCGCCCCGGCGCGGCGGAATGTCAAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTTGATTGGTCTCCTTTTATGTTGGTTTTTTTTTTGGTGTGTTTTATGTTGTTTGGGGAAGATGGGCTGTCTGTCATGCTGTCTTATGCTGTCTTATGAGTTGAAATGATCTGTTCTTTTGCTTCTTCTTCATGAAATCGCTAGTTTAGAATGACTTTTTAGGTGCTTAGAAAGTGAGTTGAAATAAGTCTTTAGTTTGGCGTTAAGAGCTTAACGAGATGGGATCGATTATGAATCCGGTGTCTTTGCGTGTTTTTGCAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGTAGCTGTATAATTATGTAGATTATTACATCAAATATGTGTATAATGACGGGAAGAATGAGATTGCTTTACTGATCAGCTGAGAGTCATTGGTGGTGTTTCTGACTGTATACTGATTGCCTTACTATAACAATGAGTTCTCGAAGAATGACGGGTTAATATGTCGATATTCCTTGCGGTGTTTGGTGATGTGTGTTCGAGGATATCTTGTACTGTTTTGGTTTTCGAGTTTGTAAGATCATATCGATGATGCGAATAATGATGTTATTATAACAAACATTCAGATTAGTTGAGCTTTGTAACTTTTTTTCCTATTGCTATTACCTCTAGATCTTGAGAGACTGGGAACGTTTTTGTTTAGTCCCTATAGTTTTAAATGTCATAATTAATCTTTTCTCT

mRNA sequence

GCCCATTTTCTTTTTGGGGTTTGGAGGCGATTTTATTTTCTGTCACTTTCCCGGGAATCTATCGATTCTAAGCCTTATTTTCTTTGTTTGGTTCAAATTTTAGATCGAGGGTTTTAGTTTTGGAAGAGGGGTTTTTGATGGGGTTGTTGGGTTCATAAATTTTGAACCCATGAGCCCTAACACGGTTCTGGATTTGTGATTTTTGCCATGTTTCGGTTCAGAAATCTCAAATCTGGGTTTGATTTTTTGATCTTTGGTGAACTATGGGTGGCGATTCTAAGGATGTTCAGAAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTTTATTGCCGCCCCGGCGCGGCGGAATGTCAAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGTAGCTGTATAATTATGTAGATTATTACATCAAATATGTGTATAATGACGGGAAGAATGAGATTGCTTTACTGATCAGCTGAGAGTCATTGGTGGTGTTTCTGACTGTATACTGATTGCCTTACTATAACAATGAGTTCTCGAAGAATGACGGGTTAATATGTCGATATTCCTTGCGGTGTTTGGTGATGTGTGTTCGAGGATATCTTGTACTGTTTTGGTTTTCGAGTTTGTAAGATCATATCGATGATGCGAATAATGATGTTATTATAACAAACATTCAGATTAGTTGAGCTTTGTAACTTTTTTTCCTATTGCTATTACCTCTAGATCTTGAGAGACTGGGAACGTTTTTGTTTAGTCCCTATAGTTTTAAATGTCATAATTAATCTTTTCTCT

Coding sequence (CDS)

ATGGGTGGCGATTCTAAGGATGTTCAGAAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTTTATTGCCGCCCCGGCGCGGCGGAATGTCAAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAATCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCGGGGGACGAGGAGGACGATTCTTGTAGCTGTATAATTATGTAG

Protein sequence

MGGDSKDVQKAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM
Homology
[Close]
BLAST of CmaCh00G006220 vs. TrEMBL
Match: A0A0A0L701_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-34
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  GDSKDV----QKAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    +K +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]
BLAST of CmaCh00G006220 vs. TrEMBL
Match: A0A061EME1_THECC (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cacao GN=TCM_020968 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 4  DSKDVQ----KAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDS 63
          D+KDV     K + ++ + ++ D  +GE+YSESN+LLPP++GGMSRK  K R KV+W D 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          NGN L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

[Close]
BLAST of CmaCh00G006220 vs. TrEMBL
Match: V7BMK7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G271300g PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-19
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 4  DSKDVQKAV----------DSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMK 63
          DSKDV   +           ++ + +V D  NG+D S+SN+LLPPRRGGMSR S+K R K
Sbjct: 2  DSKDVNGCIMDKHKPVVVASTLGSEKVEDHVNGDDESDSNSLLPPRRGGMSRNSDKTRRK 61

Query: 64 VRWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          V+W D NGN LAE+LE++PSDVSDS DE+ DSC C IM
Sbjct: 62 VQWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICTIM 99

[Close]
BLAST of CmaCh00G006220 vs. TrEMBL
Match: K7LJ92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1 

Query: 4  DSKDVQKAV---------DSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKV 63
          DSKD+   +          S+   +V D  NGED S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          +W D NGN LAE+LE++PSDVSDS DE+ DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

[Close]
BLAST of CmaCh00G006220 vs. TrEMBL
Match: A0A0B2SPA6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 1 

Query: 4  DSKDVQKAV---------DSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKV 63
          DSKD+   +          S+   +V D  NGED S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          +W D NGN LAE+LE++PSDVSDS DE+ DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

[Close]
BLAST of CmaCh00G006220 vs. TAIR10
Match: AT2G33390.1 (AT2G33390.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 10 KAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEILE 69
          KA+ S+ + E+ D    E+ SES  LLPPR+GGMSR ++K +  V+W D  G+NLAE+L 
Sbjct: 17 KAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWNDIKGDNLAEVLV 76

Query: 70 FQPSDVSDSGDEEDDSCSCIIM 92
          ++PS+VSD+ D++ DSC C IM
Sbjct: 77 YEPSEVSDTEDDDSDSCICTIM 98

[Close]
BLAST of CmaCh00G006220 vs. NCBI nr
Match: gi|449432518|ref|XP_004134046.1| (PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-34
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  GDSKDV----QKAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTD 62
          GDSKDV    +K +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW D
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          SNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]
BLAST of CmaCh00G006220 vs. NCBI nr
Match: gi|659076053|ref|XP_008438475.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 9.5e-32
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 1  MGGDSKDV----QKAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    +K +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQPSDVSDSGDEEDDSCS 88
           DSNGNNLAEILEFQPSDVSDSGDEE DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

[Close]
BLAST of CmaCh00G006220 vs. NCBI nr
Match: gi|659076051|ref|XP_008438474.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 1 

Query: 1  MGGDSKDV----QKAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDSKDV    +K +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 TDSNGNNLAEILEFQP 73
           DSNGNNLAEILEFQP
Sbjct: 61 NDSNGNNLAEILEFQP 76

[Close]
BLAST of CmaCh00G006220 vs. NCBI nr
Match: gi|590659807|ref|XP_007035229.1| (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 4  DSKDVQ----KAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDS 63
          D+KDV     K + ++ + ++ D  +GE+YSESN+LLPP++GGMSRK  K R KV+W D 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          NGN L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

[Close]
BLAST of CmaCh00G006220 vs. NCBI nr
Match: gi|645235204|ref|XP_008224162.1| (PREDICTED: uncharacterized protein LOC103323918 [Prunus mume])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-19
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 1  MGGDSKDVQKAV-----DSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVR 60
          M  D+KD          ++  +  V ++ NG++ SESN+LLPPRRGGMSRK+NK R KV+
Sbjct: 1  MDTDAKDATNGCKTEKSETTDSQRVEENVNGDEDSESNSLLPPRRGGMSRKTNKTRRKVQ 60

Query: 61 WTDSNGNNLAEILEFQPSDVSDSGDEEDDSCSCIIM 92
          W D NGN L E+LEF+PSDVSDS DE+ DSC CIIM
Sbjct: 61 WNDKNGNKLVEVLEFEPSDVSDSDDEDADSCICIIM 96

The following BLAST results are available for this feature:
BLAST of CmaCh00G006220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G006220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L701_CUCSA3.2e-3484.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1[more]
A0A061EME1_THECC2.0e-2057.61Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cac... [more]
V7BMK7_PHAVU3.8e-1955.10Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G271300g PE=4 SV=1[more]
K7LJ92_SOYBN1.1e-1855.67Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1[more]
A0A0B2SPA6_GLYSO1.1e-1855.67Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1[more]
BLAST of CmaCh00G006220 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33390.11.2e-1650.00 unknown protein[more]
BLAST of CmaCh00G006220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432518|ref|XP_004134046.1|4.6e-3484.95PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus][more]
gi|659076053|ref|XP_008438475.1|9.5e-3283.52PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo][more]
gi|659076051|ref|XP_008438474.1|1.9e-2481.58PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo][more]
gi|590659807|ref|XP_007035229.1|2.9e-2057.61Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao... [more]
gi|645235204|ref|XP_008224162.1|4.1e-1956.25PREDICTED: uncharacterized protein LOC103323918 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009642 response to light intensity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G006220.1CmaCh00G006220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401FAMILY NOT NAMEDcoord: 22..91
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G006220CmoCh06G013100Cucurbita moschata (Rifu)cmacmoB021
CmaCh00G006220Lsi05G017610Bottle gourd (USVL1VR-Ls)cmalsiB011
CmaCh00G006220Cp4.1LG03g09710Cucurbita pepo (Zucchini)cmacpeB008
CmaCh00G006220Cp4.1LG08g03250Cucurbita pepo (Zucchini)cmacpeB022
CmaCh00G006220Cla97C05G084750Watermelon (97103) v2cmawmbB006
CmaCh00G006220CsGy3G011730Cucumber (Gy14) v2cgybcmaB279
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G006220Silver-seed gourdcarcmaB1371
CmaCh00G006220Cucurbita pepo (Zucchini)cmacpeB015