Cucsa.255690 (gene) Cucumber (Gy14) v1

NameCucsa.255690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAcidic leucine-rich nuclear phosphoprotein 32-related protein 2
Locationscaffold02229 : 3583545 .. 3585290 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATTATGAAACACCCACTTTTTATTTTTTAATTTTGAAGATCTTTTCGATTTGGGTTTTGGTGTGGACTTGAGTTTCTGTCACTGTCTTTGGAATCTATCTATTCTAATCCCTTCTTTTTTTTGTTTTGTTCATAGCTTTGTTTGCCTGAAATTTTAGATCGGGGGTTTTACTTTCCGAGAAGGGGTTTTTTTTTATGGGGTTGTTGGGTTCATAAGTTTTTGAACCCGTGAGCGTTGACCCAGTTGTGAAATCGGAGTTTCGAGTGAGAATTTTTCATTGGGGGTTCAGATGAATTGGATTTCTGAGATGAGTCGATTCAGAAATCGCAAATCTGGGTCCGATTTTTGGTGTAGTTGATAGGGTAAAATTTCGATTGGATTTGTAGTTAGTGAGAGTTTTGAACTATGGATATTGGCGATTCTAAGGATGTTAATGGCTGTAAAGAGAAGACTATGGACTCTGCAGCTGCCGGAGAAGTTGGGGATCACAGTAACGGCGAAGAATACAGTGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGAGGAAATTGAATAAGCCGAGGATGAAAGTTCGGTGGAATGATAGTAATGGTAATAACCTAGCAGAGATTTTGGAGTTTCAACCAAGGTAGCTAAAATGTCTTTTTTTCCCTTTTTGGTTGCATTTTGATGGTCTTTTTGGGCATGTTTTTTTGTTGTTTAGGGAAGATGGGTTCACCGTTCTTGTTCTCTTTTTTACGTTTAGAGCATTAGAATCTGGGACTCAGAGTCGCCGTTTATATTTGAACTTGAGATGTTGAAGAAGCTGTAAGTTTCCATATTTGGGAACCGACACTCTGGATTTGGAACTTTGGAACTTTGGAACTTGAGTTTACCTCTTTTCAGTCTTCTTCTAGAAATCCTGTTTTGTAATATGCTGCCTCATGGATAGAGCTGATCTCTTCTTTTGGCTTTTTCTAGTTCATTGATGACATTTGATTGCTAGGACAACACAATTTCAAGCATAGCTTAGTTGAAAGAGCACTAATTATCCTTTCAAAAGTTGATGGTTCGATTCCCACCTCTCTATTTGTTAAGCTCAAAAAGAAAATCAATCGTCAGAACAACGGAC

mRNA sequence

TATATTATGAAACACCCACTTTTTATTTTTTAATTTTGAAGATCTTTTCGATTTGGGTTTTGGTGTGGACTTGAGTTTCTGTCACTGTCTTTGGAATCTATCTATTCTAATCCCTTCTTTTTTTTGTTTTGTTCATAGCTTTGTTTGCCTGAAATTTTAGATCGGGGGTTTTACTTTCCGAGAAGGGGTTTTTTTTTATGGGGTTGTTGGGTTCATAAGTTTTTGAACCCGTGAGCGTTGACCCAGTTGTGAAATCGGAGTTTCGAGTGAGAATTTTTCATTGGGGGTTCAGATGAATTGGATTTCTGAGATGAGTCGATTCAGAAATCGCAAATCTGGGTCCGATTTTTGGTGTAGTTGATAGGGTAAAATTTCGATTGGATTTGTAGTTAGTGAGAGTTTTGAACTATGGATATTGGCGATTCTAAGGATGTTAATGGCTGTAAAGAGAAGACTATGGACTCTGCAGCTGCCGGAGAAGTTGGGGATCACAGTAACGGCGAAGAATACAGTGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGAGGAAATTGAATAAGCCGAGGATGAAAGTTCGGTGGAATGATAGTAATGGTAATAACCTAGCAGAGATTTTGGAGTTTCAACCAAGTTCATTGATGACATTTGATTGCTAGGACAACACAATttcaagcatagcttagttgaaagagcactaattatcctttcaaaagttgatggttcgattcccacctctctatttgttaagctcaaaaaGAAAATCAATCGTCAGAACAACGGAC

Coding sequence (CDS)

ATGGATATTGGCGATTCTAAGGATGTTAATGGCTGTAAAGAGAAGACTATGGACTCTGCAGCTGCCGGAGAAGTTGGGGATCACAGTAACGGCGAAGAATACAGTGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGAGGAAATTGAATAAGCCGAGGATGAAAGTTCGGTGGAATGATAGTAATGGTAATAACCTAGCAGAGATTTTGGAGTTTCAACCAAGTTCATTGATGACATTTGATTGCTAG

Protein sequence

MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWNDSNGNNLAEILEFQPSSLMTFDC*
BLAST of Cucsa.255690 vs. TrEMBL
Match: A0A0A0L701_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 1  MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR 60
          MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR
Sbjct: 1  MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR 60

Query: 61 WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Sbjct: 61 WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Cucsa.255690 vs. TrEMBL
Match: A0A061EME1_THECC (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cacao GN=TCM_020968 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 1

Query: 5  DSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWNDS 64
          D+KDVNG   K + +  + ++ DH++GEEYSESN+LLPP++GGMSRK  K R KV+WND 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 65 NGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          NGN L E+LEF+PSDVSDS DE++DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

BLAST of Cucsa.255690 vs. TrEMBL
Match: K7LJ92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1

Query: 5  DSKDVNGC-----KEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKV 64
          DSKD+NGC     K     S    +V DH NGE+ S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 65 RWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          +WND NGN LAE+LE++PSDVSDS DE++DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

BLAST of Cucsa.255690 vs. TrEMBL
Match: A0A0B2SPA6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1

Query: 5  DSKDVNGC-----KEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKV 64
          DSKD+NGC     K     S    +V DH NGE+ S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 65 RWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          +WND NGN LAE+LE++PSDVSDS DE++DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

BLAST of Cucsa.255690 vs. TrEMBL
Match: A0A0B2QZ08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-25
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1

Query: 5  DSKDVNGC-----KEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKV 64
          DS+DVNGC     K     S    +V DH NGE+ S+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSEDVNGCLMDKHKPVVASSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 65 RWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          +WND NGN LAE+LE++PSDVSDS DE++DSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICTIM 98

BLAST of Cucsa.255690 vs. TAIR10
Match: AT2G33390.1 (AT2G33390.1 unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-23
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1

Query: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63
          G+ K+ NGC+ K + S  + E+ D    EE SES  LLPPR+GGMSR  +K +  V+WND
Sbjct: 6  GEGKEANGCENKAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWND 65

Query: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
            G+NLAE+L ++PS+VSD+ D+++DSC C IM
Sbjct: 66 IKGDNLAEVLVYEPSEVSDTEDDDSDSCICTIM 98

BLAST of Cucsa.255690 vs. NCBI nr
Match: gi|449432518|ref|XP_004134046.1| (PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 1  MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR 60
          MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR
Sbjct: 1  MDIGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR 60

Query: 61 WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Sbjct: 61 WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

BLAST of Cucsa.255690 vs. NCBI nr
Match: gi|659076053|ref|XP_008438475.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63
          GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND
Sbjct: 3  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 62

Query: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCS 93
          SNGNNLAEILEFQPSDVSDSGDEEADSCS
Sbjct: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCS 91

BLAST of Cucsa.255690 vs. NCBI nr
Match: gi|659076051|ref|XP_008438474.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63
          GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND
Sbjct: 3  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 62

Query: 64 SNGNNLAEILEFQP 78
          SNGNNLAEILEFQP
Sbjct: 63 SNGNNLAEILEFQP 76

BLAST of Cucsa.255690 vs. NCBI nr
Match: gi|590659807|ref|XP_007035229.1| (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao])

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-27
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 1

Query: 5  DSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWNDS 64
          D+KDVNG   K + +  + ++ DH++GEEYSESN+LLPP++GGMSRK  K R KV+WND 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 65 NGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          NGN L E+LEF+PSDVSDS DE++DSC CIIM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

BLAST of Cucsa.255690 vs. NCBI nr
Match: gi|694352938|ref|XP_009357995.1| (PREDICTED: uncharacterized protein LOC103948674 [Pyrus x bretschneideri])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 1

Query: 2  DIGDSKDVNGCK-EKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVR 61
          D  D+   NGCK E T D+  + +V ++ NG+E SESN+LLPPRRGGMSRK NK R KV+
Sbjct: 4  DAKDASTANGCKTETTSDTGESQKVEENVNGDEDSESNSLLPPRRGGMSRKTNKTRRKVQ 63

Query: 62 WNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 97
          WND NGN L E+LEF+PSDVSDS DE+ADSC C IM
Sbjct: 64 WNDRNGNKLVEVLEFEPSDVSDSDDEDADSCICAIM 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L701_CUCSA1.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1[more]
A0A061EME1_THECC4.0e-2763.04Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cac... [more]
K7LJ92_SOYBN3.8e-2560.82Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1[more]
A0A0B2SPA6_GLYSO3.8e-2560.82Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1[more]
A0A0B2QZ08_GLYSO8.4e-2560.82Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33390.15.3e-2350.54 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449432518|ref|XP_004134046.1|1.6e-48100.00PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus][more]
gi|659076053|ref|XP_008438475.1|3.0e-44100.00PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo][more]
gi|659076051|ref|XP_008438474.1|2.6e-35100.00PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo][more]
gi|590659807|ref|XP_007035229.1|5.8e-2763.04Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao... [more]
gi|694352938|ref|XP_009357995.1|2.9e-2663.54PREDICTED: uncharacterized protein LOC103948674 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009642 response to light intensity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.255690.2Cucsa.255690.2mRNA
Cucsa.255690.1Cucsa.255690.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401FAMILY NOT NAMEDcoord: 5..78
score: 1.8
NoneNo IPR availablePANTHERPTHR33401:SF2SUBFAMILY NOT NAMEDcoord: 5..78
score: 1.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.255690Cucumber (Chinese Long) v3cgycucB384
Cucsa.255690Cucumber (Chinese Long) v3cgycucB386
Cucsa.255690Watermelon (97103) v2cgywmbB453
Cucsa.255690Watermelon (97103) v2cgywmbB456
Cucsa.255690Wax gourdcgywgoB510
Cucsa.255690Wax gourdcgywgoB528
Cucsa.255690Cucumber (Gy14) v1cgycgyB129
Cucsa.255690Cucumber (Gy14) v1cgycgyB133
Cucsa.255690Cucurbita maxima (Rimu)cgycmaB0715
Cucsa.255690Cucurbita maxima (Rimu)cgycmaB0717
Cucsa.255690Cucurbita maxima (Rimu)cgycmaB0719
Cucsa.255690Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.255690Cucurbita maxima (Rimu)cgycmaB0732
Cucsa.255690Cucurbita moschata (Rifu)cgycmoB0708
Cucsa.255690Cucurbita moschata (Rifu)cgycmoB0710
Cucsa.255690Cucurbita moschata (Rifu)cgycmoB0713
Cucsa.255690Cucurbita moschata (Rifu)cgycmoB0721
Cucsa.255690Wild cucumber (PI 183967)cgycpiB378
Cucsa.255690Wild cucumber (PI 183967)cgycpiB381
Cucsa.255690Cucumber (Chinese Long) v2cgycuB362
Cucsa.255690Cucumber (Chinese Long) v2cgycuB365
Cucsa.255690Melon (DHL92) v3.5.1cgymeB433
Cucsa.255690Melon (DHL92) v3.5.1cgymeB434
Cucsa.255690Watermelon (Charleston Gray)cgywcgB452
Cucsa.255690Watermelon (Charleston Gray)cgywcgB455
Cucsa.255690Watermelon (Charleston Gray)cgywcgB457
Cucsa.255690Watermelon (97103) v1cgywmB475
Cucsa.255690Watermelon (97103) v1cgywmB483
Cucsa.255690Cucurbita pepo (Zucchini)cgycpeB0670
Cucsa.255690Cucurbita pepo (Zucchini)cgycpeB0675
Cucsa.255690Cucurbita pepo (Zucchini)cgycpeB0683
Cucsa.255690Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.255690Bottle gourd (USVL1VR-Ls)cgylsiB417
Cucsa.255690Melon (DHL92) v3.6.1cgymedB424
Cucsa.255690Melon (DHL92) v3.6.1cgymedB428
Cucsa.255690Melon (DHL92) v3.6.1cgymedB429
Cucsa.255690Melon (DHL92) v3.6.1cgymedB432
Cucsa.255690Silver-seed gourdcarcgyB0269
Cucsa.255690Silver-seed gourdcarcgyB0847
Cucsa.255690Silver-seed gourdcarcgyB0887
Cucsa.255690Silver-seed gourdcarcgyB1190