Cp4.1LG07g02230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g02230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranslation initiation factor IF-2
LocationCp4.1LG07 : 1405571 .. 1409019 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGGTTAAAACGAAAACAACCAATTTAATTGGCGGAATTTTGATACTTTTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAAGAAGAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGCAAAAACAGAAGTCCATTATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTTTTCCCAAATCCGAGGTACCCATTTACCAAAATTTAAGGTTTATTATTGTCTGATTCAGATTTAGCTTCCGCGAATTGGGGATTTTGTGTTTGTCTGGTTGGATTAATGGTTTGTAACGCATCTAATTTGTCGATTGGTAACCGTAGCGGATTAGGGGCAATTGAAATTTGGATTATTCCGATTGGGCAATTAGGTTTAGATTCTAAGTGGGGTTGTTTGTTTTCTTCTTGGAAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAACATGATCCACCTGAAGAGGTTTGTATGTTTTTTTCCTTTTTTGTTTTTAGTTTATGTTATTGATGAACTCATCATTGTTGTCGTGTTTGTATGTTGGTGAGCAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGTGCGGTTTGTTTTCTGATATTCTTTTGAGCATTCGTTGTCTGTTTAATCCTTTGAGTTCTTCATTGTTGTCGTGTTTGTATGTGATCCTTTGGTTTATGATACTCTGTGTTAGCATTTGGTTTGGTGCTTCATCAATCATGCTGTTGTGAGTGCTTTTCGTAGCAGTCGGTTTCGTTTTGTTTGACGAAAAGCTAATGGTACTAGTGAAACCGGACTACGTTTGTGAGATCCCATATGGGTTGGGGAGGAGAACGGAGTATTCTTTATAAGGGTGTGGAAGTCTCTTCCTAACAGACACGTTTTAAAACCTAGAGGGGAAACTCGGAAAGGAAAACCCAAAGAGGACAGTATCTGCTAGCGGTGGGTTTGGGATGTTAAAAATGGTATTAGAGTCAAACAACGGGCGATGTGCTAGCGAGGAGGTTGAACCCCGAAGGGGGTGGACACAAGGCAGTGTGCCAGCAAGGACTCTAGGCCCTGGGGATGGGTTGGGGGGTCTCACATCGATTAGAGAAGGGAACGAGTGTCAACGAGGACGCTAGATTCCGAAGGGGGTGAATTATGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTATTTCTAGCAGACGCGTTTTAAAACTTTGAGGGAAAGTCTGGAATGAAAAGCCCAAACAGAACAATATCTAGCGGTTGGCTTGGGCTGTTACAGAGTTTTTTTTTTTTTTTTACTACTAAAATTGCTAGATTTGAATTATAGGGACTAAATGCAACCAAAGGCATACGCGAGCGGTTGATTTTTAGGGGTAGATATGTTCTGTCGAACAACTTTACGACTCAACTAAGTATTTCCTTTTGGTTTGGGTTATTCCATGTTTCGAGACTTGGTCGATATTTTGGTAACTTAGACAAGATGAGCTATTGGATTAAGACCGAAACTTTTTGTGTCTCATTAGAACGTTGATGATAGAATTGGTAGATTGGACAACGTGGTAGCTCTTTACATGAGAACTAATCTGCGAGATCCCATATCAGTTGAGGAGCAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAAACCTTGAGGGGAACCCCGTAAGAGAAAGCCCAAAGAGGACAATATCGGCTAGCGGTAGGCTTAGGCTTGGCCTTCGCCTGCATCTGATCCTATAAGACGTGCAATATGAATTGTTTATTGACGTGTAGATGGCATGTTGTTCTAATAGCACATGTTTTTTTTTTTTTCTTGGAAGTTAATGTTATATTTAGTGTTGCAACCATATTGTTATATATGGACCTCCAAGGGGTGGTCTTTGGCGGTAAGGGCTATAGTGAGCTCACGGAACGATGTTTCGGTGGAAGGGTTTCTCTTTTCCACCCCGAACAAGGTTGTCATTCAAAGATGGTTTAGTTTACACGTAGAAATGGTTGAGTCATCTGTCAATAGAATCCTCAAGTGTTGAATAAAGAAGTTGTGAGTCTCGAAGGTATAATCAAAAGTAACTCAAGTGTCAAACAAATGGTGTACTTTGTTCGAGGGCTCCAGAGAAGGAGTCGAGCCTCGATTAAGGGGAGGCTATTCGAGGGTTCCATAGGCCACAAGGGAGTCTCTATGGTGTACTTTGTTCGAGGGGAGGATTGTTGAAGCCTCGATTAAGGGAAAGTTATTCGAGGGTTCCATAAGCCTCGGGGGAGGCTCCATGGTGTACTTTGTTCGATTAGAGGATTGTTGAGGATTGTTGGGAGGGAGTCCCGTATTGGCTAATTAAAGGGATGATCATGAATTTATAAGTAAGAAATATATCTCCATTGGTACGAGGCTTTTTGGAGAACAAAAGTAAAGCACGAGAGCTTATGCTCAAAGTGGACAGTATCATACCACTGTGGATTTTCGGCTGTTGGGTCATCAAGTTCTTTTATTTATTTTATACTCCGACTTCCCTTCGTGAAAAGTATCCCCATATTACTTGTCTTTGTGGATATATATTTTTGATCTCCTGGTTAAGAACATATATTTTAATCAGTTGAGTTATGTTCATATTGGTGACCTAACTAGTTTAAATTTCTAGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAAATGAGAAGACAAAAGGAACAGAGGACCGGGACACCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGCCAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTATCAGGACATTCTTTTATGGTTCAAAACCTTCTCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAAATTTAAAGTAAACAAAACAGCATG

mRNA sequence

GCAGGTTAAAACGAAAACAACCAATTTAATTGGCGGAATTTTGATACTTTTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAAGAAGAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGCAAAAACAGAAGTCCATTATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTTTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAACATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAAATGAGAAGACAAAAGGAACAGAGGACCGGGACACCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGCCAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTATCAGGACATTCTTTTATGGTTCAAAACCTTCTCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAAATTTAAAGTAAACAAAACAGCATG

Coding sequence (CDS)

ATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTTTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAACATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAAATGAGAAGACAAAAGGAACAGAGGACCGGGACACCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAG

Protein sequence

MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Homology
[Close]
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match: A0A0A0LLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKS 60
           MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  K+EVKS
Sbjct: 1   MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 60

Query: 61  KTITSSSKTTTKA---TTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSE 120
           KTI+SSSKTTTK    TT+TAKVREKKVFNL GQK+DPPEEREPLRIFYESLSKQI  SE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIK  S KP SRPESSQRPQ PSKN
Sbjct: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 180

Query: 181 GDLKAKKKITNNSDDDDNDFILSPKRRKM 200
           GD+KAKKKI N+SDDDD DFILSPKRRKM
Sbjct: 181 GDIKAKKKIVNDSDDDD-DFILSPKRRKM 205

[Close]
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match: D7SUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.4e-57
Identity = 139/193 (72.02%), Postives = 155/193 (80.31%), Query Frame = 1 

Query: 10  SKVKLGHQDGGSRLKLESSDNKKNNSSVSS----SKHKSVSVFPKSEVKSKTITSSSKTT 69
           +KVK    +  S+ K   S  KK     +     SK KSVS   KSEVKSK+ +SSSKTT
Sbjct: 3   TKVKPNAPESSSKGKAVVSVTKKKTEGSTKPTVDSKQKSVSTVTKSEVKSKSASSSSKTT 62

Query: 70  TKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLS 129
           TK TT+T KVREKKV+ L GQKHDPPEEREPLRIFYESLSKQI +SEMAEFWMMEHG+LS
Sbjct: 63  TK-TTTTVKVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLS 122

Query: 130 PEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDD 189
           PEKAKKAYEKK RRQK+ R GTP+KS KPPSRPESSQRPQQ SKNGD+KAKK+ITN+SDD
Sbjct: 123 PEKAKKAYEKKQRRQKQIRMGTPVKSPKPPSRPESSQRPQQTSKNGDIKAKKRITNDSDD 182

Query: 190 DDNDFILSPKRRK 199
           DD DFILSPK+RK
Sbjct: 183 DD-DFILSPKKRK 193

[Close]
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match: A0A067KQR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 132/200 (66.00%), Postives = 160/200 (80.00%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLG-HQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTIT 60
           M +++K TV+KVK   HQDG S++K++SS     N  + SS  K VS   K+EVKSKT +
Sbjct: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSS---LKNKKIESSNKKPVSTVTKTEVKSKTAS 60

Query: 61  SSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMM 120
           ++SKTTTK TT   +VREKKV++L GQK+DPPEEREPLRIFYESLSKQI +SEMAEFWMM
Sbjct: 61  TTSKTTTKTTT---RVREKKVYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFWMM 120

Query: 121 EHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKI 180
           EHG+LSPE+AKKAYEKK R+QK QR GTPIKS KP    ESSQ+ QQ SKNGDLK+KK+I
Sbjct: 121 EHGLLSPERAKKAYEKKQRKQKMQRLGTPIKSTKP----ESSQKQQQASKNGDLKSKKRI 180

Query: 181 TNNSDDDDNDFILSPKRRKM 200
            N++DDD  DF+LSPKRRK+
Sbjct: 181 INDNDDD--DFVLSPKRRKL 188

[Close]
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match: A0A061GKS4_THECC (Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 136/204 (66.67%), Postives = 157/204 (76.96%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSS-----SKHKSVS-VFPKSEVK 60
           M ++ +  + KVK   QDG S+ K +++ N+K   S S      SK KSVS V  K++VK
Sbjct: 1   MTTETRSNLVKVKTSGQDGSSKGKFDAAMNRKKIESSSKQAPVDSKQKSVSTVITKTQVK 60

Query: 61  SKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMA 120
           SK  +SSSKTT  ATT T KVREKKV+ L GQKHDPPEEREPLRIFYESLSKQI TSEMA
Sbjct: 61  SKASSSSSKTT--ATTKT-KVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPTSEMA 120

Query: 121 EFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLK 180
           EFWMMEHG+LSPEKA+KAYEKK RR KE RTGTPIKS KP S+PESSQ+ Q  SKNGD+K
Sbjct: 121 EFWMMEHGLLSPEKARKAYEKKQRRLKELRTGTPIKSSKPSSKPESSQKHQLASKNGDVK 180

Query: 181 AKKKITNNSDDDDNDFILSPKRRK 199
           AKK+I N+ DDDD+  ILSPKRRK
Sbjct: 181 AKKRINNDIDDDDDYLILSPKRRK 201

[Close]
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match: B9IKI7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.1e-53
Identity = 136/208 (65.38%), Postives = 163/208 (78.37%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQD-GGSRLKLESS--------DNKKNNSSVSSSKHKSVSVFPKS 60
           M +++K +V KVK    +  GS+ K+ESS         NK+   SV  SK KS+SV  K+
Sbjct: 1   MATESKQSVVKVKPSSSNFDGSKGKIESSMKAKKIESSNKQQQQSVVDSKDKSISVVTKT 60

Query: 61  EVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTS 120
           EVKSK+  SSSKTTT  TT+T +VR+KKV++L GQ++DPPEEREPLRIFYESLSKQI TS
Sbjct: 61  EVKSKSAPSSSKTTT--TTTTTRVRQKKVYSLPGQRYDPPEEREPLRIFYESLSKQIPTS 120

Query: 121 EMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKN 180
           EMAEFWMMEHG+LSPE+AKKA+EKK R+QK QR GTPIKS KP  S+PESSQ+ QQ SKN
Sbjct: 121 EMAEFWMMEHGLLSPERAKKAHEKKQRKQKMQRFGTPIKSTKPSTSKPESSQKQQQSSKN 180

Query: 181 GDLKAKKKITNNSDDDDNDFILSPKRRK 199
           GDLKAK+KI+N+SDDD  DFILS KRRK
Sbjct: 181 GDLKAKRKISNDSDDD--DFILSSKRRK 204

[Close]
BLAST of Cp4.1LG07g02230 vs. TAIR10
Match: AT5G11600.1 (AT5G11600.1 unknown protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 102/206 (49.51%), Postives = 132/206 (64.08%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNS--SVSSSKHKSVSVFPKSEVKSKTI 60
           + + ++P +S  K          K E+      NS  +++++   +  V  K++  S  +
Sbjct: 37  IATSSRPIMSDSKPRSSVSTVTAKSEAKPKVPINSVKTIATTSAAASLVKGKAQTTSTVV 96

Query: 61  TSSSKTTTKATTSTAK---VREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAE 120
           +     TT AT S  K    REKKV++LAGQK DPPEEREPLRIFYESLSKQI  SEMAE
Sbjct: 97  SLVKAKTTSATVSLVKGKAKREKKVYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAE 156

Query: 121 FWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKNG-DL 180
           FW+MEHGMLSPEKAK+A+EKK R+ K+ R GTP KS     S+ ESSQR      NG D 
Sbjct: 157 FWLMEHGMLSPEKAKRAFEKKQRKMKQIRMGTPSKSAPTFSSKAESSQRTSASKNNGLDA 216

Query: 181 KAKKKITNNSDDDDNDFILSPKRRKM 200
           + KKK+ ++ DDDD+DFILS KRRK+
Sbjct: 217 RKKKKVVDDDDDDDDDFILSHKRRKV 242

[Close]
BLAST of Cp4.1LG07g02230 vs. TAIR10
Match: AT1G19990.1 (AT1G19990.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-17
Identity = 78/202 (38.61%), Postives = 98/202 (48.51%), Query Frame = 1 

Query: 3   SDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSS 62
           S AKP   K ++   D       E     K NSSV  SK       P+ E + K      
Sbjct: 64  SRAKPVKKKEEIDKDD-------EKKPVSKRNSSVGVSKENKK---PEKEEEVK------ 123

Query: 63  KTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHG 122
                      K RE+KV++L GQK + P+ER+PLRIFYESL KQI TS+MA+ W+ME G
Sbjct: 124 -----------KKRERKVYDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESG 183

Query: 123 MLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPES--------------SQRPQQPS 182
           +L  EKAKK  EKK+  QK  +  +P+KS     R  S              S+      
Sbjct: 184 LLPAEKAKKVLEKKL--QKGGKLSSPVKSAASTPRSNSKSVTVKKKEVQKSPSEALSNKK 236

Query: 183 KNGDLK-AKKKITNNSDDDDND 190
           K  D K   KK   NSDDDD+D
Sbjct: 244 KGNDSKPTTKKRKKNSDDDDSD 236

[Close]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match: gi|659088508|ref|XP_008445018.1| (PREDICTED: neurofilament heavy polypeptide [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKS 60
           MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  KSEVKS
Sbjct: 1   MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKSEVKS 60

Query: 61  KTITSSSKTTTKA---TTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSE 120
           KTI+SSSKTTTK    TT+TAKVREKK+FNL GQK+DPPEEREPLRIFYESLSKQI  SE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKIFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIK  S KP SRPESSQRPQ PSKN
Sbjct: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 180

Query: 181 GDLKAKKKITNNSDDDDNDFILSPKRRKM 200
           GD+KAKKKI N+SDDDD DFILSPKRRKM
Sbjct: 181 GDIKAKKKIMNDSDDDD-DFILSPKRRKM 205

[Close]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match: gi|449465141|ref|XP_004150287.1| (PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKS 60
           MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  K+EVKS
Sbjct: 67  MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 126

Query: 61  KTITSSSKTTTKA---TTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSE 120
           KTI+SSSKTTTK    TT+TAKVREKKVFNL GQK+DPPEEREPLRIFYESLSKQI  SE
Sbjct: 127 KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 186

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIK  S KP SRPESSQRPQ PSKN
Sbjct: 187 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 246

Query: 181 GDLKAKKKITNNSDDDDNDFILSPKRRKM 200
           GD+KAKKKI N+SDDDD DFILSPKRRKM
Sbjct: 247 GDIKAKKKIVNDSDDDD-DFILSPKRRKM 271

[Close]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match: gi|700207699|gb|KGN62818.1| (hypothetical protein Csa_2G374600 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKS 60
           MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  K+EVKS
Sbjct: 1   MVSDPKSTLSKLK---PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 60

Query: 61  KTITSSSKTTTKA---TTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSE 120
           KTI+SSSKTTTK    TT+TAKVREKKVFNL GQK+DPPEEREPLRIFYESLSKQI  SE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIK  S KP SRPESSQRPQ PSKN
Sbjct: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 180

Query: 181 GDLKAKKKITNNSDDDDNDFILSPKRRKM 200
           GD+KAKKKI N+SDDDD DFILSPKRRKM
Sbjct: 181 GDIKAKKKIVNDSDDDD-DFILSPKRRKM 205

[Close]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match: gi|225429940|ref|XP_002283869.1| (PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 4.9e-57
Identity = 139/193 (72.02%), Postives = 155/193 (80.31%), Query Frame = 1 

Query: 10  SKVKLGHQDGGSRLKLESSDNKKNNSSVSS----SKHKSVSVFPKSEVKSKTITSSSKTT 69
           +KVK    +  S+ K   S  KK     +     SK KSVS   KSEVKSK+ +SSSKTT
Sbjct: 3   TKVKPNAPESSSKGKAVVSVTKKKTEGSTKPTVDSKQKSVSTVTKSEVKSKSASSSSKTT 62

Query: 70  TKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLS 129
           TK TT+T KVREKKV+ L GQKHDPPEEREPLRIFYESLSKQI +SEMAEFWMMEHG+LS
Sbjct: 63  TK-TTTTVKVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLS 122

Query: 130 PEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDD 189
           PEKAKKAYEKK RRQK+ R GTP+KS KPPSRPESSQRPQQ SKNGD+KAKK+ITN+SDD
Sbjct: 123 PEKAKKAYEKKQRRQKQIRMGTPVKSPKPPSRPESSQRPQQTSKNGDIKAKKRITNDSDD 182

Query: 190 DDNDFILSPKRRK 199
           DD DFILSPK+RK
Sbjct: 183 DD-DFILSPKKRK 193

[Close]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match: gi|802633206|ref|XP_012077357.1| (PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas])

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 132/200 (66.00%), Postives = 160/200 (80.00%), Query Frame = 1 

Query: 1   MVSDAKPTVSKVKLG-HQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTIT 60
           M +++K TV+KVK   HQDG S++K++SS     N  + SS  K VS   K+EVKSKT +
Sbjct: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSS---LKNKKIESSNKKPVSTVTKTEVKSKTAS 60

Query: 61  SSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLSKQISTSEMAEFWMM 120
           ++SKTTTK TT   +VREKKV++L GQK+DPPEEREPLRIFYESLSKQI +SEMAEFWMM
Sbjct: 61  TTSKTTTKTTT---RVREKKVYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFWMM 120

Query: 121 EHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKI 180
           EHG+LSPE+AKKAYEKK R+QK QR GTPIKS KP    ESSQ+ QQ SKNGDLK+KK+I
Sbjct: 121 EHGLLSPERAKKAYEKKQRKQKMQRLGTPIKSTKP----ESSQKQQQASKNGDLKSKKRI 180

Query: 181 TNNSDDDDNDFILSPKRRKM 200
            N++DDD  DF+LSPKRRK+
Sbjct: 181 INDNDDD--DFVLSPKRRKL 188

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g02230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g02230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLY4_CUCSA1.6e-7079.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1[more]
D7SUA5_VITVI3.4e-5772.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=... [more]
A0A067KQR0_JATCU1.2e-5466.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1[more]
A0A061GKS4_THECC1.8e-5366.67Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1[more]
B9IKI7_POPTR5.1e-5365.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1[more]
BLAST of Cp4.1LG07g02230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11600.12.5e-3549.51 unknown protein[more]
AT1G19990.16.9e-1738.61 unknown protein[more]
BLAST of Cp4.1LG07g02230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088508|ref|XP_008445018.1|1.7e-7079.43PREDICTED: neurofilament heavy polypeptide [Cucumis melo][more]
gi|449465141|ref|XP_004150287.1|2.3e-7079.43PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus][more]
gi|700207699|gb|KGN62818.1|2.3e-7079.43hypothetical protein Csa_2G374600 [Cucumis sativus][more]
gi|225429940|ref|XP_002283869.1|4.9e-5772.02PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera][more]
gi|802633206|ref|XP_012077357.1|1.7e-5466.00PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0008150 biological_process
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g02230.1Cp4.1LG07g02230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33828FAMILY NOT NAMEDcoord: 26..199
score: 1.8
NoneNo IPR availablePANTHERPTHR33828:SF1SUBFAMILY NOT NAMEDcoord: 26..199
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g02230Cucsa.161320Cucumber (Gy14) v1cgycpeB0444
Cp4.1LG07g02230CmaCh12G002540Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g02230CmaCh05G005950Cucurbita maxima (Rimu)cmacpeB794
Cp4.1LG07g02230CmoCh05G006210Cucurbita moschata (Rifu)cmocpeB747
Cp4.1LG07g02230CmoCh12G002070Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g02230Cla022213Watermelon (97103) v1cpewmB782
Cp4.1LG07g02230Csa2G374600Cucumber (Chinese Long) v2cpecuB810
Cp4.1LG07g02230MELO3C011144Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g02230ClCG08G012260Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g02230CSPI02G22280Wild cucumber (PI 183967)cpecpiB811
Cp4.1LG07g02230Lsi08G010870Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g02230MELO3C011144.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g02230CsaV3_2G030890Cucumber (Chinese Long) v3cpecucB1004
Cp4.1LG07g02230Bhi04G000695Wax gourdcpewgoB1043
Cp4.1LG07g02230CsGy2G022030Cucumber (Gy14) v2cgybcpeB260
Cp4.1LG07g02230Carg03845Silver-seed gourdcarcpeB1368
Cp4.1LG07g02230Carg08282Silver-seed gourdcarcpeB0087
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g02230Cp4.1LG11g05160Cucurbita pepo (Zucchini)cpecpeB138
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g02230Cucurbita pepo (Zucchini)cpecpeB511
Cp4.1LG07g02230Cucumber (Gy14) v2cgybcpeB440
Cp4.1LG07g02230Melon (DHL92) v3.6.1cpemedB906
Cp4.1LG07g02230Silver-seed gourdcarcpeB0907
Cp4.1LG07g02230Cucumber (Chinese Long) v3cpecucB1020
Cp4.1LG07g02230Wax gourdcpewgoB1059