Carg08282 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08282
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcriptional regulator ATRX homolog
Location	Cucurbita_argyrosperma_scaffold_015 : 605740 .. 609898 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTTTTCGCCTAAATTTATTTTTGTTTTTCCTATTCTGAAGCAAGTTCTTCAGCTTGGGAAGGAAGGAGTGTTAAGAACAAGGAAGACGGGAGGAAGAAGGTTGTTTCTTCTGACATAGAGCCTAATCAATAGGCAAAAATCCTAAAACCTAAAACCAATTATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTACTAATTTTGGAAATCTGTCGCGAATTGTTTTTTCTTTTTTTTGTCTGAATTGTTTTGATGTTTAGAAACGCATCTAAGATCGGTAAGAGTAACGGATTTGGGGTAATTGAAATTTGGAGTTTGTGAGGGTTCTTTCAGTTACTTCCGATGTTGTAATTTCGTATTTCATTGGGGGATTCACCTCATTGGGCGGGCAGCTGTTCTTGGTGGCTTTGGAATTTTTTTGAATCCTTCCTTTTCTCTGATCGTTGATTTTGAACTTGGGTTTCATTTGATTTGTTTATGGAAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACAACAGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCACCTGAAGAGGTTTGTACTTTAATCCTTGATGGTTTTTGTTGTTGATATGATTGATGAACTCATCATTCTTGCTCTTTTGTATGCTATGAACAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGTTTGTTTTCTGATATTCTTTTGAGCATTCTTTGAGGTCTTTATAAAACGATGAATATAGTATTGATTTGAACCAATCCATATGCTCCCATTTTTAATAAGATTTCGACTAGAAGCATACAAGTTCTGTAATGTGCCTCTCTGTAGATATATGGTAATCATGTATATAAGGGTATAATCGGTGATTTGAGAGCAAAAGCAATAAGAACTCCGACATAGAATACTATTTCTAGTGCTATAGGATACGATTGATTAGCTGATGTTTCGAAATTTGAAGTTGGTTCATTAGAACCATATAAACCGATACCAAGAGCATGAGCATGAGCTTTAGGCGTATGGTAATCCGTGATCGTCTCAATTTGTGAAGTTGGATGATGATTATCATCCACATAATCTACTACTACTATAGGTTTTCTATTCGAATTATAGGGACTAAGTGCAGTCGAAATTGTACACGAGAGGCTGCCTTTTAGGGGCAGATAAGCTCTGTCAAACAGCTTTACCACTAAGTGTTTCCTTTGTGTTTTGGTTATTCCAGTTTTCATGTGACACTTGCTCAGTATTTTGGTTACTCAGACAAGATGAACCATTGGGTTAAGACTGAAACTTTTCATGTCTGATCCAATATTGATGATAGAAACGATAGATTGGATAAGTTGCTAGCTCTTGATATGAAAACAAATCCAACTTTATGCAAATGTCTTCCGCTGGAAGCTTATGCTTATATTCATGATGGAGTATATCAGAATTGAGTATAATAGCCTGCATTTGATCCTTCTATGTTCTTTCTACTTTCTGAATTTGTTCATTTTGTAACTTGAGTTTATGGATAAGGTATAAAGTGTGCAATGTGAGTTATTTACATGTGACTGACGTGTAGAGAGTCTGACATCCCACATCGGTTGGAGAGGGGAACGAAACATTCCTAATAAGGGTGTGGAAGGCTGTTATAGTTGGTTTCAGAGCCAAACACCAGGCGATGTGCCAGTGAGGAGGCCGAGCCCCAAAGGGGGTTCGAGACAAGGCGGTGTACCAGAAAGGACATTGGGCCCCGAAGGGGGGTGGATTATGAGATCCATCATCGATCGGGGAGGAGAACGAAGCATTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACTGCATTTTAAAAACTTGAGGGGAAGCCCAGCCTAGGACGTTTGAGGAAATTTCTCAACAAAGGTCTTGGATTCAAACCACCCAATAAGGAACTTAATTAATGAAAACCTTTGAACTCTCAATGTGCTATCATTTGGGCGGGAGAAGTCTCTCCATGGAGTCGTCGGGTAGGAATGAATTCCACATATATCTCGAAATAAACAATTAAACAAAAGTCTTCTTTTTTTTTTTTTTATCATCTGTTCCTGGTTTTAATGGATATATTGCGGGGCAGCTGTAACGAGCTCAAGGAACTATGTTTAGCTGGAAGAGTATATTTTTCCGCCCCCAACAAGATTGCAGTTCAAAGACAATTATCTTGTTTTAGGATTGTTAAGTTACATGAGAAATGGCTGGATCATGGACTGAGTCATTTGTTTGCCAGAATGAGAATTCTTTCCCTGAGTGAAGGTCTGGTGTGATTTGTTGGCTTTTAGGAACAATGCACCAAAAATTGGTGTCTCCTGATGGATTACTGGTTGATATTAAGGAGCGTTAACATTAAAATAAAGGTTGTATGAAGTTGATCTTCTAGAAGAGTTGAGAACAAGTTTTTTCTTTTTGTTTGAAATTCGTGTGCTACTTTGGCAGTTCTTCATGCGAAAGTACTTCTAACTTACAATGGGTTAAAAAAGTTGTGAGATCCCACATCGGTTCAGGAGGAGAACGAACCATTCTTTAAAGGGTGTGGAAATCTCTCCTTAGGTGACGCGTTTTAAAAACCTTGAGGGAAAGCCCGAAAGGGAAAACCCAAAGAGGACAGTATTTGCTAGCGGTGGCCTTGGGCCGTTACAAATGGTATCAAAGCCAGACATCGGGCGATGTGTCAGCGAGGAGACTGATCCCTGAAGGGGGGTGGACACGAGTTTGTGTGCCAACAAGAACGTTGAGCTCCGAAGGGGGTGGATTGGGTGGGGGGTCCCTCATCGATTGGAGAAAGGAACGAGTGCTAACGAGGACACTGAGTCCCGAAGGGGGATGGATTGTGAGATCCCACATCGATTGGGGAGGAGAATGAAGCATTCTTTAAAGGATGTGGAAACCTATCCCTAGTAGACGTGTTTTAAAAACCTTGAGAGGAAGCTCGAAAAGGAAACCCCAAAGAAGACAATATCTGCTAGCAGGTGGATTTGGACTTAGACTTCGGAGTGTTACAAAAATTATAAAAGCTGAATTTGCACTTGAAGAAGATTCCAAAATTATAATGTACAAGACAGGACATAAGACCTGTAGCAATTAGCTCTTGAATAGTTAAGATCAAAGCAAGGTGCTGTGGGTTTACGAATTATAAACACAAAGGTTTCGTGTTTTTTGGTACAAACAGGATTCAATCAGTGGTCTTATGTACTTAAACACCGATTTAGGATGCTCAAATTTAGAGCTAAAAAGAAAGCTACATGTCTTGTGAAAAATATCTGAATATTTCATGTCTTGTGATTTTTGAAGCATGCCATTATATTTATTGACATATTCGTTATTAACATGAGATTGGTAGCCCTTTGTTATCTCGTATCAAATATTTGAATCGTGTATCCTTTTCGTCGTTTCGTTCTGTTAAAACGAGATTGCTAGCACCCTTATTGTCTTGGGTTGAGAATGCATCTCTTTTCAACATTTTTATGGTTTCTGTGCATTACTCTATTGAGAAGCCAAAAGGGATAACCAGTCTAAATTTCTAGGATGATGGAGCACGGCATGTTATCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGCGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAGGGAGAACACACCCGCCCTGCCTTCGTTCTTTATTATCATACTTTTCGAGGAATTACTTGATTAAAATTTCCTTAGAGTTGATGATTATAACCCAACAGTATTTACCTGGACATTCTTTTATACTCCACAGCTGTGTATGAACAATAATTTTAGAAGAGACGAGTCTTATGGTTCAAGTCCTTTTC

mRNA sequence

TCGTTTTCGCCTAAATTTATTTTTGTTTTTCCTATTCTGAAGCAAGTTCTTCAGCTTGGGAAGGAAGGAGTGTTAAGAACAAGGAAGACGGGAGGAAGAAGGTTGTTTCTTCTGACATAGAGCCTAATCAATAGGCAAAAATCCTAAAACCTAAAACCAATTATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACAACAGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCACCTGAAGAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGATGATGGAGCACGGCATGTTATCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGCGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAGGGAGAACACACCCGCCCTGCCTTCGTTCTTTATTATCATACTTTTCGAGGAATTACTTGATTAAAATTTCCTTAGAGTTGATGATTATAACCCAACAGTATTTACCTGGACATTCTTTTATACTCCACAGCTGTGTATGAACAATAATTTTAGAAGAGACGAGTCTTATGGTTCAAGTCCTTTTC

Coding sequence (CDS)

ATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACAACAGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCACCTGAAGAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGATGATGGAGCACGGCATGTTATCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGCGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAG

Protein sequence

MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSVSVVTKSEVKSKTSSSSSRATTKTTTTVTTAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPSKPESSQRPQQPSKNGDLKAKQKVTNDSDDDDDNFILSPKRRKM

Homology

[Close]

BLAST of Carg08282 vs. NCBI nr
Match: XP_022962317.1 (protein spalten-like [Cucurbita moschata])

HSP 1 Score: 239.6 bits (610), Expect = 8.8e-60
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKA 120
           XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGML PEKA
Sbjct: 61  XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLPPEKA 120

Query: 121 KKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXX 180
           KKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXX
Sbjct: 121 KKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXX 180

Query: 181 FILSPKRRKM 191
           FILSPKRRKM
Sbjct: 181 FILSPKRRKM 190

[Close]

BLAST of Carg08282 vs. NCBI nr
Match: XP_023546622.1 (protein spalten-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 4.4e-59
Identity = 181/190 (95.26%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVSEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKA 120
           XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKA
Sbjct: 61  XXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKA 120

Query: 121 KKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXX 180
           KKAYEKKLRRQKEQRSGTPIKSP XXXXXXXXXXXXXXSKNGDLKAKQKVTN        
Sbjct: 121 KKAYEKKLRRQKEQRSGTPIKSPKXXXXXXXXXXXXXXSKNGDLKAKQKVTN--DSDDDN 180

Query: 181 FILSPKRRKM 191
           FILSPKRRKM
Sbjct: 181 FILSPKRRKM 188

[Close]

BLAST of Carg08282 vs. NCBI nr
Match: XP_022996595.1 (uncharacterized protein LOC111491788 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51
Identity = 166/198 (83.84%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGG-------SIKNSNPSSKHKSXXXXXXXXXXXXXXXXXXXX 60
           MVSEPK TVSKQKPGNQDGG       SIKNSNPSSKH  XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVSEPKPTVSKQKPGNQDGGSRLKIDSSIKNSNPSSKHXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHG 120
           XXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHG
Sbjct: 61  XXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHG 120

Query: 121 MLSPEKAKKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQK-VTN 180
           MLSPEKAKKAYEKKLRRQKEQRSGTPIKSP               SKNGDLKAKQK    
Sbjct: 121 MLSPEKAKKAYEKKLRRQKEQRSGTPIKSPKLLSKPESSQRPQQPSKNGDLKAKQKXXXX 180

Query: 181 XXXXXXXXFILSPKRRKM 191
           XXXXXXXX   SPKRRKM
Sbjct: 181 XXXXXXXXXXXSPKRRKM 198

[Close]

BLAST of Carg08282 vs. NCBI nr
Match: XP_022132017.1 (uncharacterized protein LOC111004987 isoform X2 [Momordica charantia])

HSP 1 Score: 171.8 bits (434), Expect = 2.3e-39
Identity = 145/205 (70.73%), Postives = 151/205 (73.66%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGGS------------IKNSNPS---SKHKSXXXXXXXXXXXX 60
           MV+E K TVSK KPGNQDGGS            I++S  S   SK KS         XXX
Sbjct: 1   MVAETKPTVSKLKPGNQDGGSRLKLESSDNKRKIESSTKSSIGSKPKS-ASVLIKSEXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMA 120
           XXXXXXXXXXXXXXXXXXXXX EKKVYNL GQK DPPEEREPLRIFYESLSKQIP SEMA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXEKKVYNLAGQKYDPPEEREPLRIFYESLSKQIPTSEMA 120

Query: 121 EFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLK 180
           EFWMMEHGMLSPEKAK+AYEKKLRRQKEQR+GTP+KSP               SKNGDLK
Sbjct: 121 EFWMMEHGMLSPEKAKRAYEKKLRRQKEQRTGTPVKSPKLPSKPESSQKQQMSSKNGDLK 180

Query: 181 AKQKVTNXXXXXXXXFILSPKRRKM 191
           AK     XXXXXXXXFILSPKRRKM
Sbjct: 181 AK-XXXXXXXXXXXXFILSPKRRKM 203

[Close]

BLAST of Carg08282 vs. NCBI nr
Match: XP_022132016.1 (uncharacterized protein LOC111004987 isoform X1 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 142/206 (68.93%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGG----------------SIKNSNPSSKHKSXXXXXXXXXXX 60
           MV+E K TVSK KPGNQDGG                S K+S  S    +       XXXX
Sbjct: 1   MVAETKPTVSKLKPGNQDGGSRLKLESSDNKRKIESSTKSSIGSKPKSASVLIKSEXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEM 120
           XXXXXXXXXXXXXXXXXXXXXX  KKVYNL GQK DPPEEREPLRIFYESLSKQIP SEM
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXKKVYNLAGQKYDPPEEREPLRIFYESLSKQIPTSEM 120

Query: 121 AEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDL 180
           AEFWMMEHGMLSPEKAK+AYEKKLRRQKEQR+GTP+KSP               SKNGDL
Sbjct: 121 AEFWMMEHGMLSPEKAKRAYEKKLRRQKEQRTGTPVKSPKLPSKPESSQKQQMSSKNGDL 180

Query: 181 KAKQKVTNXXXXXXXXFILSPKRRKM 191
           KAK     XXXXXXXXFILSPKRRKM
Sbjct: 181 KAK-XXXXXXXXXXXXFILSPKRRKM 205

[Close]

BLAST of Carg08282 vs. TAIR10
Match: AT5G11600.1 (unknown protein)

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-24
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 78  KCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSG 137
           K DPPEEREPLRIFYESLSKQIP SEMAEFW+MEHGMLSPEKAK+A+EKK R+ K+ R G
Sbjct: 128 KFDPPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFEKKQRKMKQIRMG 187

Query: 138 TPIKS 143
           TP KS
Sbjct: 188 TPSKS 192

[Close]

BLAST of Carg08282 vs. TAIR10
Match: AT1G19990.1 (unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-16
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 74  LPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKE 133
           LPGQK + P+ER+PLRIFYESL KQIP S+MA+ W+ME G+L  EKAKK  EKKL  QK 
Sbjct: 117 LPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKVLEKKL--QKG 176

Query: 134 QRSGTPIKS 143
            +  +P+KS
Sbjct: 177 GKLSSPVKS 183

[Close]

BLAST of Carg08282 vs. TrEMBL
Match: tr|A0A1S3BCG5|A0A1S3BCG5_CUCME (uncharacterized protein LOC103488185 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488185 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.2e-38
Identity = 146/209 (69.86%), Postives = 152/209 (72.73%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGG----------------SIKNSNPSSKHKS-XXXXXXXXXX 60
           MVS+PKST+SK KP   DGG                SIKNS PSSKHKS        XXX
Sbjct: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKSEXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 120
           XXXXXXXXXXXXXXXXXXXXXXX EKK++NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXEKKIFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSGTPIK--SPXXXXXXXXXXXXXXXSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQR+GTPIK  S                SKN
Sbjct: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 180

Query: 181 GDLKAKQKVTNXXXXXXXXFILSPKRRKM 191
           GD+KAK     XXXXXXXX   SPKRRKM
Sbjct: 181 GDIKAK-XXXXXXXXXXXXXXXSPKRRKM 205

[Close]

BLAST of Carg08282 vs. TrEMBL
Match: tr|A0A0A0LLY4|A0A0A0LLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374600 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 146/209 (69.86%), Postives = 151/209 (72.25%), Query Frame = 0


Query: 1   MVSEPKSTVSKQKPGNQDGG----------------SIKNSNPSSKHKS-XXXXXXXXXX 60
           MVS+PKST+SK KP   DGG                SIKNS PSSKHKS        XXX
Sbjct: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 120
           XXXXXXXXXXXXXXXXXXXXXXX EKKV+NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXEKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

Query: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRSGTPIK--SPXXXXXXXXXXXXXXXSKN 180
           MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQR+GTPIK  S                SKN
Sbjct: 121 MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKN 180

Query: 181 GDLKAKQKVTNXXXXXXXXFILSPKRRKM 191
           GD+KAK     XXXXXXXX    PKRRKM
Sbjct: 181 GDIKAK-XXXXXXXXXXXXXXXXPKRRKM 205

[Close]

BLAST of Carg08282 vs. TrEMBL
Match: tr|A0A061GKS4|A0A061GKS4_THECC (Translation initiation factor IF-2 OS=Theobroma cacao OX=3641 GN=TCM_047092 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 85/120 (70.83%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 70  KVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLR 129
           KVY LPGQK DPPEEREPLRIFYESLSKQIP SEMAEFWMMEHG+LSPEKA+KAYEKK R
Sbjct: 82  KVYTLPGQKHDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPEKARKAYEKKQR 141

Query: 130 RQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXXFILSPKRRK 189
           R KE R+GTPIKS                SKNGD+KAK+++ N   XXXX  ILSPKRRK
Sbjct: 142 RLKELRTGTPIKSSKPSSKPESSQKHQLASKNGDVKAKKRINNDIDXXXXYLILSPKRRK 201

[Close]

BLAST of Carg08282 vs. TrEMBL
Match: tr|A0A0D2N572|A0A0D2N572_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G289900 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.5e-34
Identity = 81/122 (66.39%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 68  EKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKK 127
           EKKVY LPGQK DPPEEREPLRIFYESLSKQIP SEMAEFWMMEHG+LSPE+A+KAYEKK
Sbjct: 76  EKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPERARKAYEKK 135

Query: 128 LRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXXFILSPKR 187
            RRQK+ R+GTPIK                 SKNGD+KAK+++ N        FI SPKR
Sbjct: 136 QRRQKQIRAGTPIK-------PSKPSNKPESSKNGDVKAKKRINNDADDDSDDFIFSPKR 190

Query: 188 RK 190
           RK
Sbjct: 196 RK 190

[Close]

BLAST of Carg08282 vs. TrEMBL
Match: tr|A0A2P5QTD3|A0A2P5QTD3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD25265 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.5e-34
Identity = 81/122 (66.39%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 68  EKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKK 127
           EKKVY LPGQK DPPEEREPLRIFYESLSKQIP SEMAEFWMMEHG+LSPE+A+KAYEKK
Sbjct: 76  EKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPERARKAYEKK 135

Query: 128 LRRQKEQRSGTPIKSPXXXXXXXXXXXXXXXSKNGDLKAKQKVTNXXXXXXXXFILSPKR 187
            RRQK+ R+GTPIK                 SKNGD+KAK+++ N        FI SPKR
Sbjct: 136 QRRQKQIRAGTPIK-------PSKPSNKPESSKNGDVKAKKRINNDADDDSDDFIFSPKR 190

Query: 188 RK 190
           RK
Sbjct: 196 RK 190

The following BLAST results are available for this feature:

BLAST of Carg08282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962317.1	8.8e-60	99.47	protein spalten-like [Cucurbita moschata]	[more]
XP_023546622.1	4.4e-59	95.26	protein spalten-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022996595.1	5.7e-51	83.84	uncharacterized protein LOC111491788 [Cucurbita maxima]	[more]
XP_022132017.1	2.3e-39	70.73	uncharacterized protein LOC111004987 isoform X2 [Momordica charantia]	[more]
XP_022132016.1	1.5e-38	68.93	uncharacterized protein LOC111004987 isoform X1 [Momordica charantia]	[more]

BLAST of Carg08282 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11600.1	9.5e-24	81.54	unknown protein	[more]
AT1G19990.1	2.5e-16	62.32	unknown protein	[more]

BLAST of Carg08282 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08282 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCG5\|A0A1S3BCG5_CUCME	8.2e-38	69.86	uncharacterized protein LOC103488185 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LLY4\|A0A0A0LLY4_CUCSA	2.4e-37	69.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374600 PE=4 SV=1	[more]
tr\|A0A061GKS4\|A0A061GKS4_THECC	1.9e-34	70.83	Translation initiation factor IF-2 OS=Theobroma cacao OX=3641 GN=TCM_047092 PE=4...	[more]
tr\|A0A0D2N572\|A0A0D2N572_GOSRA	5.5e-34	66.39	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G289900 PE=4 ...	[more]
tr\|A0A2P5QTD3\|A0A2P5QTD3_GOSBA	5.5e-34	66.39	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD25265 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08282-RA	Carg08282-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..190
None	No IPR available	PANTHER	PTHR33828:SF1	SUBFAMILY NOT NAMED	coord: 21..189
None	No IPR available	PANTHER	PTHR33828	FAMILY NOT NAMED	coord: 21..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08282	Cla022213	Watermelon (97103) v1	carwmB0058
Carg08282	Csa2G374600	Cucumber (Chinese Long) v2	carcuB0059
Carg08282	MELO3C011144	Melon (DHL92) v3.5.1	carmeB0058
Carg08282	ClCG08G012260	Watermelon (Charleston Gray)	carwcgB0063
Carg08282	CSPI02G22280	Wild cucumber (PI 183967)	carcpiB0063
Carg08282	Cucsa.161320	Cucumber (Gy14) v1	carcgyB0066
Carg08282	CmaCh05G005950	Cucurbita maxima (Rimu)	carcmaB0083
Carg08282	CmaCh12G002540	Cucurbita maxima (Rimu)	carcmaB0074
Carg08282	CmoCh05G006200	Cucurbita moschata (Rifu)	carcmoB0087
Carg08282	CmoCh12G002070	Cucurbita moschata (Rifu)	carcmoB0078
Carg08282	Lsi08G010870	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08282	Cp4.1LG11g05160	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08282	Cp4.1LG07g02230	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08282	CsGy2G022030	Cucumber (Gy14) v2	carcgybB0060
Carg08282	MELO3C011144.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08282	CsaV3_2G030890	Cucumber (Chinese Long) v3	carcucB0065
Carg08282	Cla97C08G155440	Watermelon (97103) v2	carwmbB0061
Carg08282	Bhi04G000695	Wax gourd	carwgoB0068

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08282	Carg03845	Silver-seed gourd	carcarB071

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08282	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08282	Melon (DHL92) v3.6.1	carmedB0061
Carg08282	Watermelon (97103) v1	carwmB0060