CSPI02G22280 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G22280
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Translation initiation factor IF-2
Location	Chr2 : 19422103 .. 19426195 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCATCGTCGGCTAAATTGCAGTTAAAAAACGAGAAAAACCATTTTTAATTAGCGAAATGTTGATTGATTGATGCTTTTCGTTTTCGGTTTCGGTTTCTTCTACGTTTATTTTTATTATTATTATTATCTTATTCTCAAGCAGTTGGAAGAATTGAGATTAGATTATCTTCTGTGTAGGAAGAAGGAAGACGGGAGGAAGAGGAAGAAGAAGATTGATTCTTCTGATAAATTTTCTAAATTATTAAACCACAAAAAAAAAAACCCATTATGGTTTCAGACCCCAAGTCCACTCTTTCGAAGCTCAAACCCGATGGCGGCTCCAGGTTAAAGCTTGAATCCTCTGATCATAAGAAGAAGATTGACAGCTCCATCAAGAACTCAATTCCCTCTTCCAAGCACAAATCCGTCTCTCTTGTCACCAAAGCCGAGGTATCCGTTTGGAATTTTTGAGGTTTATTTACGATTCAGATTTAGCTGCCTCGAATTGGGGTTTTCTTGTTTTTGTCTGAATTGTTTTGATGTTTTGAAACCCGTCTGAAATTGGTAAGAGTAACGGATTATTGGGGTCATTATGAGTGTTCTTTCAGTTAATTCTGATGTTCTAAGTTCGTATTTGATTGGGGGATTTCATTGAAGTTTGGATTCTCCTCATTGGACTGTTGTTGTTCTTGGTGGCTTTGGAATGTTTGTGATTGTGACCGTTAATTCCTTCCATGCTCTGATTGCTGATTTGTTAATTTGGGTTTAATTGTTTTTCTATTTGGAAGGTAAAGTCAAAGACAATTTCGAGTTCTTCAAAGACGACAACAAAGACTACAACAACTACTACTGCTACTGCTAAAGTGAGAGAAAAGAAAGTCTTTAATTTGCCTGGTCAGAAATATGATCCACCTGAAGAGGTTTGTGCTCTCCTCCTACTTGGTAGTTTGTGTAGTTTATATGATTGATGAACTCATCATTCTTGCTCTCTTGTATGTTGGGAACAGAGAGAACCGCTTCGGATCTTCTACGAGTCCTTGTCAAAACAAATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGTTTGTTTTCTGATATTCTTTTCAGCATTCACTGTCTATTTAATCCATTGAGAATGTTTCGGGAGAAAAAAATTCCTTTGAGAACTTCACTAACTAGGAATATGGAATTGAGGTTGCTTTGGACTTCATATGGTTCTTTTCATCTTGTTTCGTACATGACCCCTTGGCCGATGACAATCTACGCAAGTTTCCCATAGGTAGACAAATGAAGCTGGATGATTTTTATCTTCCACTTAATCTACTACTTACTACTATAGGTTCTAAATTTGAATTATAGGTAACAAAATGCTACCGATGTCATAAGCAGGAGGCTGCCTATTAGGGGCAGATAAGTTCTGTGAAATGGTTCCTTTGTGTTTGGGTCATTCCAATTTTCATGTGACAGCTCAATATTTTGGTTACTCATACAAGATGAACCATTAGGTTCAGACTCAAACTTTCCATGTCTGATTCAGCATTGATGCTAGGAATGATAGATTGAACAAGTGGCTAGCTTTTTATGTGAGAACAAATCCAACTCGTGCAGATGTCTTCTGCTAGGAACTAATGTTTCTTTGCTTATGTGGAATATATCAGAGTTGAATATAATAGCTCGCATCTGATCCTAATTTCTTTCTACTGTCTGAATTTGTTCATTTTGTAACTTAAGTTTATGGATATCTTTTGAAGTGTGCACGTCATTGTTTATGTATGCAACTGAGTTGTAGAGAGCATATTGTACTAATAGCACGGGTTTGTTTTTGAAGTTAAAGTTATATACTTTTGTTGCAATCGTGTTGTCATATAAGCTCCTCAAGGGGTGGTCCTGGCAGTGAGGGGTTAAGGATGTTTGAGGAAGTTTCTTGACGAAGGTCTTGGATTCAAGCCTCCAAGTGGAGAACTTATTTAATGAAAAGCTTTGAGCAATCTATGAGCTAGCATTTGGGCGGGTGAAGTCTCTTCATGGAGTAATAGGGAAGGACCGAATCCCACAGGTATCACAATAATTAATGAATATATTGGGGATCGGCTGTAATGAACTCAAGGAACCATGATTAGGTGGAACAGTCTCTTTTTTCCACCAGCAGGAAGATTTCAGTTCGAAGGCAATTATCTTGTTTTAGGACCGTTAAGTTACATATCATGGAGTGAGTCATTTGTTTGCCAGAATGAAAATTCTTTCGTTGGCAGAGGGTCTGGTGTGATTTGTTAGCTTTTTGGAACGATGCACTAAAAATTGGAGTCTCCTGATGGATTACTGGTCGATATTAAGGAATAAGGAGCTTTAACATTAAAATTGAGGTTGTACCAAGGAGGGTTAAGAACAAGATTTTTCTTTTTGAATTTGAAATTCACAGCTACCTACCTCACTTGAAGAAGGTTTTCGAATTTATAATGTATAAGACAGGACATAAGACCTTCAGTAGTAAAAAGTAATTAGTTCTATAATAGTTAACATTAGAGCTAAGTTCTGTTGATTCATGAAATATAAACATGAAGGTCTGCATTAGTGGAATTCAATCAATGGCTTTACGTCTCTAAGATAGAATTAGGGCGGTCAAAATTCTCGTAAAATAAAATAAAAGGCAGTAACAATCGTTTTTCATTTCTATGGAGAAAACTACAATCATCAAGTTCTTTTGTAATATTCACAGGGCACCACATAGATATTCAACCACTTCAAGTTTAAGCAAGTTTCAGGAATTCCAGAAGAATCCTGTAGGGTTGATATAGTAAGACTTAACTAGATAGACATCAAACATGGAGTCTTCTTGTGCCTGCTGTTATAATCTACCAAAAAGTTAAAGCGATCACAATGTACACTAAATGTGAAAGGCTCGGCTGCAGATAAAGCATGGATGAAACATTTGGAATGCGGTTTAATATTAAAGACTCGGCTGCAGATAAAGCATGGATGAAACATTTGGAATGCGGTTTAAGTTTTTGTGCACTTCTAGCCAATTCCTTTCTCTTTCTCTCTCTTGTCCCTGTCATTTCAAGAATTCTATATGCATATAAATTTTTGTTTTCTAGTAAAAGTTGCTTCATTAGATACTCGATCCAAATTGTTTTATAAGTTTAATATAATGTTGGTAAATCATTGTAGGATATTTAAAGGATCAAGTCTTCAGATCTGTTAATATGAACTACTGATGCACTTTTCCATAGGCCTACACGTCTAGATCGTGCCTTCCAGTGGTACTCCAGCATCCCCTGATGAAAAACATCCAATATTTCTTGTATTGTGAAAACTACCTTGACCGGAGGTCCTGATTGTGCTTTTGAAAGTATGCCATCATGTTTATTGATATATTCATTGTTAACATGAGATTGCTAGCC

mRNA sequence

ATGGTTTCAGACCCCAAGTCCACTCTTTCGAAGCTCAAACCCGATGGCGGCTCCAGGTTAAAGCTTGAATCCTCTGATCATAAGAAGAAGATTGACAGCTCCATCAAGAACTCAATTCCCTCTTCCAAGCACAAATCCGTCTCTCTTGTCACCAAAGCCGAGGTAAAGTCAAAGACAATTTCGAGTTCTTCAAAGACGACAACAAAGACTACAACAACTACTACTGCTACTGCTAAAGTGAGAGAAAAGAAAGTCTTTAATTTGCCTGGTCAGAAATATGATCCACCTGAAGAGAGAGAACCGCTTCGGATCTTCTACGAGTCCTTGTCAAAACAAATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGATATTTAAAGGATCAAGTCTTCAGATCTGTTAATATGAACTACTGA

Coding sequence (CDS)

ATGGTTTCAGACCCCAAGTCCACTCTTTCGAAGCTCAAACCCGATGGCGGCTCCAGGTTAAAGCTTGAATCCTCTGATCATAAGAAGAAGATTGACAGCTCCATCAAGAACTCAATTCCCTCTTCCAAGCACAAATCCGTCTCTCTTGTCACCAAAGCCGAGGTAAAGTCAAAGACAATTTCGAGTTCTTCAAAGACGACAACAAAGACTACAACAACTACTACTGCTACTGCTAAAGTGAGAGAAAAGAAAGTCTTTAATTTGCCTGGTCAGAAATATGATCCACCTGAAGAGAGAGAACCGCTTCGGATCTTCTACGAGTCCTTGTCAAAACAAATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGATATTTAAAGGATCAAGTCTTCAGATCTGTTAATATGAACTACTGA

Homology

[Close]

BLAST of CSPI02G22280 vs. TrEMBL
Match: A0A0A0LLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.1e-88
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60
           MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI
Sbjct: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60

Query: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120
           SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE
Sbjct: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120

Query: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180
           FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI
Sbjct: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180

Query: 181 KAKKK 186
           KAKKK
Sbjct: 181 KAKKK 185

[Close]

BLAST of CSPI02G22280 vs. TrEMBL
Match: D7SUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.5e-50
Identity = 126/172 (73.26%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 14  PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTISSSSKTTTKTTTT 73
           P+  S+ K   S  KKK + S K ++  SK KSVS VTK+EVKSK+ SSSSKTTTKTTT 
Sbjct: 10  PESSSKGKAVVSVTKKKTEGSTKPTV-DSKQKSVSTVTKSEVKSKSASSSSKTTTKTTT- 69

Query: 74  TTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEK 133
              T KVREKKV+ LPGQK+DPPEEREPLRIFYESLSKQIP+SEMAEFWMMEHG+LSPEK
Sbjct: 70  ---TVKVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPEK 129

Query: 134 AKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKAKKK 186
           AKKAYEKK RRQK+ R GTP+K  S KP SRPESSQRPQ  SKNGDIKAKK+
Sbjct: 130 AKKAYEKKQRRQKQIRMGTPVK--SPKPPSRPESSQRPQQTSKNGDIKAKKR 174

[Close]

BLAST of CSPI02G22280 vs. TrEMBL
Match: B9IKI7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 125/193 (64.77%), Postives = 150/193 (77.72%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDG----GSRLKLESSDHKKKIDSSIKN---SIPSSKHKSVSLVTKA 60
           M ++ K ++ K+KP      GS+ K+ESS   KKI+SS K    S+  SK KS+S+VTK 
Sbjct: 1   MATESKQSVVKVKPSSSNFDGSKGKIESSMKAKKIESSNKQQQQSVVDSKDKSISVVTKT 60

Query: 61  EVKSKTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQI 120
           EVKSK+  SSSKTTT TTTT     +VR+KKV++LPGQ+YDPPEEREPLRIFYESLSKQI
Sbjct: 61  EVKSKSAPSSSKTTTTTTTT-----RVRQKKVYSLPGQRYDPPEEREPLRIFYESLSKQI 120

Query: 121 PASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKP-LSRPESSQRPQ 180
           P SEMAEFWMMEHG+LSPE+AKKA+EKK R+QK QR GTPIK  S KP  S+PESSQ+ Q
Sbjct: 121 PTSEMAEFWMMEHGLLSPERAKKAHEKKQRKQKMQRFGTPIK--STKPSTSKPESSQKQQ 180

Query: 181 PPSKNGDIKAKKK 186
             SKNGD+KAK+K
Sbjct: 181 QSSKNGDLKAKRK 186

[Close]

BLAST of CSPI02G22280 vs. TrEMBL
Match: A0A061GKS4_THECC (Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 123/189 (65.08%), Postives = 147/189 (77.78%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVS-LVTKAEVK 60
           M ++ +S L K+K    DG S+ K +++ ++KKI+SS K +   SK KSVS ++TK +VK
Sbjct: 1   MTTETRSNLVKVKTSGQDGSSKGKFDAAMNRKKIESSSKQAPVDSKQKSVSTVITKTQVK 60

Query: 61  SKTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPAS 120
           SK  SSSSKTT  T T      KVREKKV+ LPGQK+DPPEEREPLRIFYESLSKQIP S
Sbjct: 61  SKASSSSSKTTATTKT------KVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPTS 120

Query: 121 EMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSK 180
           EMAEFWMMEHG+LSPEKA+KAYEKK RR KE RTGTPIK  S+KP S+PESSQ+ Q  SK
Sbjct: 121 EMAEFWMMEHGLLSPEKARKAYEKKQRRLKELRTGTPIK--SSKPSSKPESSQKHQLASK 180

Query: 181 NGDIKAKKK 186
           NGD+KAKK+
Sbjct: 181 NGDVKAKKR 181

[Close]

BLAST of CSPI02G22280 vs. TrEMBL
Match: A0A067KQR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 121/189 (64.02%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKP----DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVK 60
           M ++ K T++K+K     DG S++K++SS   KKI+SS K        K VS VTK EVK
Sbjct: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESSNK--------KPVSTVTKTEVK 60

Query: 61  SKTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPAS 120
           SKT S++SKTTTKTTT      +VREKKV++LPGQKYDPPEEREPLRIFYESLSKQIP+S
Sbjct: 61  SKTASTTSKTTTKTTT------RVREKKVYSLPGQKYDPPEEREPLRIFYESLSKQIPSS 120

Query: 121 EMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSK 180
           EMAEFWMMEHG+LSPE+AKKAYEKK R+QK QR GTPIKS      ++PESSQ+ Q  SK
Sbjct: 121 EMAEFWMMEHGLLSPERAKKAYEKKQRKQKMQRLGTPIKS------TKPESSQKQQQASK 169

Query: 181 NGDIKAKKK 186
           NGD+K+KK+
Sbjct: 181 NGDLKSKKR 169

[Close]

BLAST of CSPI02G22280 vs. TAIR10
Match: AT5G11600.1 (AT5G11600.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-30
Identity = 106/215 (49.30%), Postives = 130/215 (60.47%), Query Frame = 1


Query: 3   SDPKSTLSKLKPDGGSRLKLESS-DHKKKIDSSIKNSIPSSKHKS-VSLVT-KAEVKSKT 62
           S+P+   S L     SR+K++ S   KKKI +S +  +  SK +S VS VT K+E K K 
Sbjct: 12  SEPRDASSSLS----SRVKIDPSIKDKKKIATSSRPIMSDSKPRSSVSTVTAKSEAKPKV 71

Query: 63  ISSSSKTTTKTTT----------------------TTTATAKV------REKKVFNLPGQ 122
             +S KT   T+                       TT+AT  +      REKKV++L GQ
Sbjct: 72  PINSVKTIATTSAAASLVKGKAQTTSTVVSLVKAKTTSATVSLVKGKAKREKKVYSLAGQ 131

Query: 123 KYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTG 182
           K+DPPEEREPLRIFYESLSKQIP SEMAEFW+MEHGMLSPEKAK+A+EKK R+ K+ R G
Sbjct: 132 KFDPPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFEKKQRKMKQIRMG 191

Query: 183 TPIKSASAKPLSRPESSQRPQPPSKNG-DIKAKKK 186
           TP KSA     S+ ESSQR      NG D + KKK
Sbjct: 192 TPSKSAPTFS-SKAESSQRTSASKNNGLDARKKKK 221

[Close]

BLAST of CSPI02G22280 vs. TAIR10
Match: AT1G19990.1 (AT1G19990.1 unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-19
Identity = 71/173 (41.04%), Postives = 97/173 (56.07%), Query Frame = 1


Query: 7   STLSKLKPDGGS-----RLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVT-------KAE 66
           S+ +K KP  G+     +LK E +D     +  IK+S+  S+ K V           K  
Sbjct: 24  SSFAKKKPTNGNNAGSKKLKKEENDDDDDDNKPIKSSVSGSRAKPVKKKEEIDKDDEKKP 83

Query: 67  VKSKTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIP 126
           V  +  S       K         K RE+KV++LPGQK + P+ER+PLRIFYESL KQIP
Sbjct: 84  VSKRNSSVGVSKENKKPEKEEEVKKKRERKVYDLPGQKREQPDERDPLRIFYESLYKQIP 143

Query: 127 ASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPES 168
            S+MA+ W+ME G+L  EKAKK  EKKL  QK  +  +P+KSA++ P S  +S
Sbjct: 144 TSDMAQIWLMESGLLPAEKAKKVLEKKL--QKGGKLSSPVKSAASTPRSNSKS 194

[Close]

BLAST of CSPI02G22280 vs. NCBI nr
Match: gi|449465141|ref|XP_004150287.1| (PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 3.0e-88
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60
           MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI
Sbjct: 67  MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 126

Query: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120
           SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE
Sbjct: 127 SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 186

Query: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180
           FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI
Sbjct: 187 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 246

Query: 181 KAKKK 186
           KAKKK
Sbjct: 247 KAKKK 251

[Close]

BLAST of CSPI02G22280 vs. NCBI nr
Match: gi|700207699|gb|KGN62818.1| (hypothetical protein Csa_2G374600 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 3.0e-88
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60
           MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI
Sbjct: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60

Query: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120
           SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE
Sbjct: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120

Query: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180
           FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI
Sbjct: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180

Query: 181 KAKKK 186
           KAKKK
Sbjct: 181 KAKKK 185

[Close]

BLAST of CSPI02G22280 vs. NCBI nr
Match: gi|659088508|ref|XP_008445018.1| (PREDICTED: neurofilament heavy polypeptide [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 8.6e-88
Identity = 183/185 (98.92%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTI 60
           MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTK+EVKSKTI
Sbjct: 1   MVSDPKSTLSKLKPDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKSEVKSKTI 60

Query: 61  SSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120
           SSSSKTTTKTTTTTTATAKVREKK+FNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE
Sbjct: 61  SSSSKTTTKTTTTTTATAKVREKKIFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAE 120

Query: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180
           FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI
Sbjct: 121 FWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDI 180

Query: 181 KAKKK 186
           KAKKK
Sbjct: 181 KAKKK 185

[Close]

BLAST of CSPI02G22280 vs. NCBI nr
Match: gi|225429940|ref|XP_002283869.1| (PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera])

HSP 1 Score: 205.3 bits (521), Expect = 9.3e-50
Identity = 126/172 (73.26%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 14  PDGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKSKTISSSSKTTTKTTTT 73
           P+  S+ K   S  KKK + S K ++  SK KSVS VTK+EVKSK+ SSSSKTTTKTTT 
Sbjct: 10  PESSSKGKAVVSVTKKKTEGSTKPTV-DSKQKSVSTVTKSEVKSKSASSSSKTTTKTTT- 69

Query: 74  TTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEK 133
              T KVREKKV+ LPGQK+DPPEEREPLRIFYESLSKQIP+SEMAEFWMMEHG+LSPEK
Sbjct: 70  ---TVKVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPEK 129

Query: 134 AKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKAKKK 186
           AKKAYEKK RRQK+ R GTP+K  S KP SRPESSQRPQ  SKNGDIKAKK+
Sbjct: 130 AKKAYEKKQRRQKQIRMGTPVK--SPKPPSRPESSQRPQQTSKNGDIKAKKR 174

[Close]

BLAST of CSPI02G22280 vs. NCBI nr
Match: gi|224142970|ref|XP_002324800.1| (hypothetical protein POPTR_0018s00280g [Populus trichocarpa])

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 125/193 (64.77%), Postives = 150/193 (77.72%), Query Frame = 1


Query: 1   MVSDPKSTLSKLKPDG----GSRLKLESSDHKKKIDSSIKN---SIPSSKHKSVSLVTKA 60
           M ++ K ++ K+KP      GS+ K+ESS   KKI+SS K    S+  SK KS+S+VTK 
Sbjct: 1   MATESKQSVVKVKPSSSNFDGSKGKIESSMKAKKIESSNKQQQQSVVDSKDKSISVVTKT 60

Query: 61  EVKSKTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQI 120
           EVKSK+  SSSKTTT TTTT     +VR+KKV++LPGQ+YDPPEEREPLRIFYESLSKQI
Sbjct: 61  EVKSKSAPSSSKTTTTTTTT-----RVRQKKVYSLPGQRYDPPEEREPLRIFYESLSKQI 120

Query: 121 PASEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKP-LSRPESSQRPQ 180
           P SEMAEFWMMEHG+LSPE+AKKA+EKK R+QK QR GTPIK  S KP  S+PESSQ+ Q
Sbjct: 121 PTSEMAEFWMMEHGLLSPERAKKAHEKKQRKQKMQRFGTPIK--STKPSTSKPESSQKQQ 180

Query: 181 PPSKNGDIKAKKK 186
             SKNGD+KAK+K
Sbjct: 181 QSSKNGDLKAKRK 186

The following BLAST results are available for this feature:

BLAST of CSPI02G22280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G22280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLY4_CUCSA	2.1e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1	[more]
D7SUA5_VITVI	6.5e-50	73.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=...	[more]
B9IKI7_POPTR	1.4e-47	64.77	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1	[more]
A0A061GKS4_THECC	3.9e-47	65.08	Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1	[more]
A0A067KQR0_JATCU	3.9e-47	64.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1	[more]

BLAST of CSPI02G22280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11600.1	5.1e-30	49.30	unknown protein	[more]
AT1G19990.1	2.4e-19	41.04	unknown protein	[more]

BLAST of CSPI02G22280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465141\|ref\|XP_004150287.1\|	3.0e-88	100.00	PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus]	[more]
gi\|700207699\|gb\|KGN62818.1\|	3.0e-88	100.00	hypothetical protein Csa_2G374600 [Cucumis sativus]	[more]
gi\|659088508\|ref\|XP_008445018.1\|	8.6e-88	98.92	PREDICTED: neurofilament heavy polypeptide [Cucumis melo]	[more]
gi\|225429940\|ref\|XP_002283869.1\|	9.3e-50	73.26	PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera]	[more]
gi\|224142970\|ref\|XP_002324800.1\|	1.9e-47	64.77	hypothetical protein POPTR_0018s00280g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0008150	biological_process
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G22280.2	CSPI02G22280.2	mRNA
CSPI02G22280.1	CSPI02G22280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33828	FAMILY NOT NAMED	coord: 18..123 score: 4.2
None	No IPR available	PANTHER	PTHR33828:SF1	SUBFAMILY NOT NAMED	coord: 18..123 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G22280	Cla022213	Watermelon (97103) v1	cpiwmB112
CSPI02G22280	Csa2G374600	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G22280	MELO3C011144	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G22280	ClCG08G012260	Watermelon (Charleston Gray)	cpiwcgB168
CSPI02G22280	Lsi08G010870	Bottle gourd (USVL1VR-Ls)	cpilsiB139
CSPI02G22280	MELO3C011144.2	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G22280	CsaV3_2G030890	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G22280	Cla97C08G155440	Watermelon (97103) v2	cpiwmbB162
CSPI02G22280	Bhi04G000695	Wax gourd	cpiwgoB162
CSPI02G22280	Cucsa.161320	Cucumber (Gy14) v1	cgycpiB239
CSPI02G22280	CmaCh05G005950	Cucurbita maxima (Rimu)	cmacpiB794
CSPI02G22280	CmaCh12G002540	Cucurbita maxima (Rimu)	cmacpiB165
CSPI02G22280	CmoCh12G002070	Cucurbita moschata (Rifu)	cmocpiB150
CSPI02G22280	CmoCh05G006200	Cucurbita moschata (Rifu)	cmocpiB783
CSPI02G22280	Cp4.1LG07g02230	Cucurbita pepo (Zucchini)	cpecpiB811
CSPI02G22280	Cp4.1LG11g05160	Cucurbita pepo (Zucchini)	cpecpiB093
CSPI02G22280	CsGy2G022030	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G22280	Carg03845	Silver-seed gourd	carcpiB1010
CSPI02G22280	Carg08282	Silver-seed gourd	carcpiB0063

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G22280	Wild cucumber (PI 183967)	cpicpiB061
CSPI02G22280	Cucumber (Gy14) v1	cgycpiB468
CSPI02G22280	Melon (DHL92) v3.5.1	cpimeB132
CSPI02G22280	Watermelon (Charleston Gray)	cpiwcgB109
CSPI02G22280	Watermelon (97103) v1	cpiwmB164
CSPI02G22280	Bottle gourd (USVL1VR-Ls)	cpilsiB118
CSPI02G22280	Cucumber (Chinese Long) v3	cpicucB094
CSPI02G22280	Watermelon (97103) v2	cpiwmbB109