CmoCh05G006200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 3111721 .. 3112140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGCACGGCATGTTACCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGTGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAGGGAAAACACACCCGCCCTGCCTTCGTTCTTTATTATCATACTTTTCGAGGAATTACTTGATTAAAATTTCCTTAGAGTTGATTATAACCCAACAGTATTTACCTGGACATTCTTTTATACTCCACAGCTGTGTATGAACAATAATTTTAGAAGAGACGAGTCTTATGGTTC

mRNA sequence

ATGATGGAGCACGGCATGTTACCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGTGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAGGGAAAACACACCCGCCCTGCCTTCGTTCTTTATTATCATACTTTTCGAGGAATTACTTGATTAAAATTTCCTTAGAGTTGATTATAACCCAACAGTATTTACCTGGACATTCTTTTATACTCCACAGCTGTGTATGAACAATAATTTTAGAAGAGACGAGTCTTATGGTTC

Coding sequence (CDS)

ATGATGGAGCACGGCATGTTACCACCCGAAAAGGCGAAAAAGGCATACGAGAAGAAACTAAGAAGACAAAAGGAACAGAGATCCGGGACTCCGATTAAATCACCAAAACCGCCGAGCAAACCAGAGAGTTCGCAGAGGCCACAGCAACCCTCTAAGAATGGCGATCTAAAAGCAAAGCAAAAGGTCACGAACGATAGTGACGACGACGACGACAACTTCATTCTAAGTCCCAAGAGAAGGAAAATGTAG

Homology

[Close]

BLAST of CmoCh05G006200 vs. TrEMBL
Match: A0A0A0LLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-26
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIK--SPKPPSKPESSQRPQQPSKNGDLKA 60
           MMEHGML PEKAKKAYEKKLRRQKEQR+GTPIK  S KP S+PESSQRPQ PSKNGD+KA
Sbjct: 123 MMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKA 182

Query: 61  KQKVTNDSDDDDDNFILSPKRRKM 83
           K+K+ NDSDDDDD FILSPKRRKM
Sbjct: 183 KKKIVNDSDDDDD-FILSPKRRKM 205

[Close]

BLAST of CmoCh05G006200 vs. TrEMBL
Match: D7SUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPSKPESSQRPQQPSKNGDLKAKQ 60
           MMEHG+L PEKAKKAYEKK RRQK+ R GTP+KSPKPPS+PESSQRPQQ SKNGD+KAK+
Sbjct: 114 MMEHGLLSPEKAKKAYEKKQRRQKQIRMGTPVKSPKPPSRPESSQRPQQTSKNGDIKAKK 173

Query: 61  KVTNDSDDDDDNFILSPKRRK 82
           ++TNDSDDDDD FILSPK+RK
Sbjct: 174 RITNDSDDDDD-FILSPKKRK 193

[Close]

BLAST of CmoCh05G006200 vs. TrEMBL
Match: A0A061GKS4_THECC (Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-21
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPSKPESSQRPQQPSKNGDLKAKQ 60
           MMEHG+L PEKA+KAYEKK RR KE R+GTPIKS KP SKPESSQ+ Q  SKNGD+KAK+
Sbjct: 121 MMEHGLLSPEKARKAYEKKQRRLKELRTGTPIKSSKPSSKPESSQKHQLASKNGDVKAKK 180

Query: 61  KVTNDSDDDDDNFILSPKRRK 82
           ++ ND DDDDD  ILSPKRRK
Sbjct: 181 RINNDIDDDDDYLILSPKRRK 201

[Close]

BLAST of CmoCh05G006200 vs. TrEMBL
Match: B9RRY2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0799210 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPSKPESSQRPQQPSKNGDLKAKQ 60
           MMEHG+L P+KAK+AYEKK R+QK QR GTP+KS KPPSKPESSQ+ QQ SKNG+LK K+
Sbjct: 134 MMEHGLLSPDKAKRAYEKKQRKQKMQRMGTPMKSAKPPSKPESSQKQQQASKNGELKPKK 193

Query: 61  KVTNDSDDDDDNFILSPKRRKM 83
           ++ +D+DDDD  F+LSPKRRK+
Sbjct: 194 RIIDDNDDDD--FVLSPKRRKV 213

[Close]

BLAST of CmoCh05G006200 vs. TrEMBL
Match: V4UI78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009557mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-20
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPS-KPESSQRPQQPSKNGDLKAK 60
           MMEHG+L PE+AKKAYEKK R+QK+ R GTP KSP P S KPESSQ+ QQ SKNGD+KAK
Sbjct: 78  MMEHGLLSPERAKKAYEKKQRKQKQVRMGTPNKSPHPLSNKPESSQKQQQGSKNGDIKAK 137

Query: 61  QKVTNDSDDDDDNFILSPKRRK 82
           ++V+ND+DDDDD FILSPKRRK
Sbjct: 138 RRVSNDADDDDD-FILSPKRRK 158

[Close]

BLAST of CmoCh05G006200 vs. TAIR10
Match: AT5G11600.1 (AT5G11600.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKS-PKPPSKPESSQRPQQPSKNG-DLKA 60
           +MEHGML PEKAK+A+EKK R+ K+ R GTP KS P   SK ESSQR      NG D + 
Sbjct: 159 LMEHGMLSPEKAKRAFEKKQRKMKQIRMGTPSKSAPTFSSKAESSQRTSASKNNGLDARK 218

Query: 61  KQKVTNDSDDDDDNFILSPKRRKM 83
           K+KV +D DDDDD+FILS KRRK+
Sbjct: 219 KKKVVDDDDDDDDDFILSHKRRKV 242

[Close]

BLAST of CmoCh05G006200 vs. NCBI nr
Match: gi|449465141|ref|XP_004150287.1| (PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIK--SPKPPSKPESSQRPQQPSKNGDLKA 60
           MMEHGML PEKAKKAYEKKLRRQKEQR+GTPIK  S KP S+PESSQRPQ PSKNGD+KA
Sbjct: 189 MMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKA 248

Query: 61  KQKVTNDSDDDDDNFILSPKRRKM 83
           K+K+ NDSDDDDD FILSPKRRKM
Sbjct: 249 KKKIVNDSDDDDD-FILSPKRRKM 271

[Close]

BLAST of CmoCh05G006200 vs. NCBI nr
Match: gi|700207699|gb|KGN62818.1| (hypothetical protein Csa_2G374600 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIK--SPKPPSKPESSQRPQQPSKNGDLKA 60
           MMEHGML PEKAKKAYEKKLRRQKEQR+GTPIK  S KP S+PESSQRPQ PSKNGD+KA
Sbjct: 123 MMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKA 182

Query: 61  KQKVTNDSDDDDDNFILSPKRRKM 83
           K+K+ NDSDDDDD FILSPKRRKM
Sbjct: 183 KKKIVNDSDDDDD-FILSPKRRKM 205

[Close]

BLAST of CmoCh05G006200 vs. NCBI nr
Match: gi|225429940|ref|XP_002283869.1| (PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKPPSKPESSQRPQQPSKNGDLKAKQ 60
           MMEHG+L PEKAKKAYEKK RRQK+ R GTP+KSPKPPS+PESSQRPQQ SKNGD+KAK+
Sbjct: 114 MMEHGLLSPEKAKKAYEKKQRRQKQIRMGTPVKSPKPPSRPESSQRPQQTSKNGDIKAKK 173

Query: 61  KVTNDSDDDDDNFILSPKRRK 82
           ++TNDSDDDDD FILSPK+RK
Sbjct: 174 RITNDSDDDDD-FILSPKKRK 193

[Close]

BLAST of CmoCh05G006200 vs. NCBI nr
Match: gi|659088508|ref|XP_008445018.1| (PREDICTED: neurofilament heavy polypeptide [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIK--SPKPPSKPESSQRPQQPSKNGDLKA 60
           MMEHGML PEKAKKAYEKKLRRQKEQR+GTPIK  S KP S+PESSQRPQ PSKNGD+KA
Sbjct: 123 MMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSASAKPLSRPESSQRPQPPSKNGDIKA 182

Query: 61  KQKVTNDSDDDDDNFILSPKRRKM 83
           K+K+ NDSDDDDD FILSPKRRKM
Sbjct: 183 KKKIMNDSDDDDD-FILSPKRRKM 205

[Close]

BLAST of CmoCh05G006200 vs. NCBI nr
Match: gi|743921337|ref|XP_011004730.1| (PREDICTED: uncharacterized protein LOC105111150 isoform X4 [Populus euphratica])

HSP 1 Score: 108.2 bits (269), Expect = 6.8e-21
Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MMEHGMLPPEKAKKAYEKKLRRQKEQRSGTPIKSPKP-PSKPESSQRPQQPSKNGDLKAK 60
           MMEHG+L PE+AKKAYEKK R+QK QR GTPIKS KP  SKPESSQ+ QQ SKNGDLKAK
Sbjct: 125 MMEHGLLSPERAKKAYEKKQRKQKMQRFGTPIKSTKPSTSKPESSQKQQQSSKNGDLKAK 184

Query: 61  QKVTNDSDDDDDNFILSPKRRK 82
           +K++NDSDDDD  FILSPKRRK
Sbjct: 185 RKISNDSDDDD--FILSPKRRK 204

The following BLAST results are available for this feature:

BLAST of CmoCh05G006200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G006200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLY4_CUCSA	8.3e-26	84.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1	[more]
D7SUA5_VITVI	1.1e-25	81.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=...	[more]
A0A061GKS4_THECC	6.2e-21	74.07	Translation initiation factor IF-2 OS=Theobroma cacao GN=TCM_047092 PE=4 SV=1	[more]
B9RRY2_RICCO	2.4e-20	69.51	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0799210 PE=4 SV=1	[more]
V4UI78_9ROSI	8.9e-20	74.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009557mg PE=4 SV=1	[more]

BLAST of CmoCh05G006200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11600.1	1.2e-15	60.71	unknown protein	[more]

BLAST of CmoCh05G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465141\|ref\|XP_004150287.1\|	1.2e-25	84.52	PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus]	[more]
gi\|700207699\|gb\|KGN62818.1\|	1.2e-25	84.52	hypothetical protein Csa_2G374600 [Cucumis sativus]	[more]
gi\|225429940\|ref\|XP_002283869.1\|	1.6e-25	81.48	PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera]	[more]
gi\|659088508\|ref\|XP_008445018.1\|	1.6e-25	84.52	PREDICTED: neurofilament heavy polypeptide [Cucumis melo]	[more]
gi\|743921337\|ref\|XP_011004730.1\|	6.8e-21	78.05	PREDICTED: uncharacterized protein LOC105111150 isoform X4 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006200.1	CmoCh05G006200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33828	FAMILY NOT NAMED	coord: 1..82 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G006200	Cucsa.161320	Cucumber (Gy14) v1	cgycmoB0461
CmoCh05G006200	CmaCh12G002540	Cucurbita maxima (Rimu)	cmacmoB194
CmoCh05G006200	CmaCh05G005950	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G006200	Cla022213	Watermelon (97103) v1	cmowmB746
CmoCh05G006200	Csa2G374600	Cucumber (Chinese Long) v2	cmocuB778
CmoCh05G006200	MELO3C011144	Melon (DHL92) v3.5.1	cmomeB719
CmoCh05G006200	ClCG08G012260	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G006200	CSPI02G22280	Wild cucumber (PI 183967)	cmocpiB783
CmoCh05G006200	CsaV3_2G030890	Cucumber (Chinese Long) v3	cmocucB0919
CmoCh05G006200	Carg08282	Silver-seed gourd	carcmoB0087
CmoCh05G006200	Carg03845	Silver-seed gourd	carcmoB1318

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G006200	CmoCh12G002070	Cucurbita moschata (Rifu)	cmocmoB151

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G006200	Wax gourd	cmowgoB0946
CmoCh05G006200	Wax gourd	cmowgoB0961
CmoCh05G006200	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G006200	Cucurbita pepo (Zucchini)	cmocpeB747
CmoCh05G006200	Bottle gourd (USVL1VR-Ls)	cmolsiB718
CmoCh05G006200	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G006200	Cucumber (Gy14) v2	cgybcmoB239
CmoCh05G006200	Melon (DHL92) v3.6.1	cmomedB816
CmoCh05G006200	Melon (DHL92) v3.6.1	cmomedB820
CmoCh05G006200	Cucumber (Chinese Long) v3	cmocucB0929
CmoCh05G006200	Watermelon (97103) v2	cmowmbB779
CmoCh05G006200	Watermelon (97103) v2	cmowmbB800