CmoCh05G006210 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Translation initiation factor IF-2
Location	Cmo_Chr05 : 3115073 .. 3115978 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTCGTTTTGGCCTAACTTTATTTTTGTTATTCCTATTCTGAAGCAGTTCTTCAGCTTGGGAAGGAAGGAGTGTTAAGAACAAGGAAGACGGGAGGGAGAAGGTTGTTTCTTCTGATATAGAGCCTAATCAATAGGCAAAAATCCTAAAACCTAAAACCAATTATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTACTAATTTTGGAAATCTGTCGCGAATTGTTTTTTCTTTTTTTGTCTGAATTGTTTTGATGTTTTGAAACGCATCTAAGATCGGTAAGAGTAACGGATTTGGGGTAATTGAAATTTGGAGTTTGTGAGGGTTCTTTCAGTTACTTCCGATGTTGTAATTTCGTATTTCATTGGGGGATTCACCTCATTGGGCGGGCTGCTGTTCTTGGTGGCTTTGGAATTTTTTTGAATCCTTCCTTTTCTCTGATCGTTGATTTTGAATTTGGGTTTCAATTGATTTGTTTATGGAAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACGACTGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCCCCTGAAGAGGTTTGTACTTTAATACTTGATGGTTTTTGTTGTTGATATGATTGATGAACTCATCATTCTTGCTCTTTTGTATGCTATGAACAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGTTTGTTTTCTGATATTCTTTTGAGCATTCTTTGA

mRNA sequence

ATGCTTTTCGTTTTGGCCTAACTTTATTTTTGTTATTCCTATTCTGAAGCAGTTCTTCAGCTTGGGAAGGAAGGAGTGTTAAGAACAAGGAAGACGGGAGGGAGAAGGTTGTTTCTTCTGATATAGAGCCTAATCAATAGGCAAAAATCCTAAAACCTAAAACCAATTATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACGACTGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCCCCTGAAGAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGTTTGTTTTCTGATATTCTTTTGAGCATTCTTTGA

Coding sequence (CDS)

ATGGTTTCAGAGCCCAAATCCACTGTTTCGAAGCAAAAACCTGGTAATCAAGATGGCGGCTCCATCAAGAACTCAAATCCTTCTTCCAAACACAAATCCGTCTCTGTTGTCACTAAATCCGAGGTGAAGTCAAAGACAAGTTCGAGTTCTTCAAGGGCGACAACAAAAACTACTACGACTGTTACTACTGCTAAAGTGAGAGAAAAGAAAGTGTATAATTTGCCTGGTCAGAAATGTGATCCCCCTGAAGAGAGAGAGCCCCTTCGGATATTTTACGAGTCCTTGTCGAAACAGATACCAGCAAGTGAAATGGCAGAGTTTTGGTGCGGTTTGTTTTCTGATATTCTTTTGAGCATTCTTTGA

Homology

[Close]

BLAST of CmoCh05G006210 vs. TrEMBL
Match: A0A0A0LLY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33
Identity = 93/125 (74.40%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPGNQDGGS----------------IKNSNPSSKHKSVSVVTKSEVKS 60
           MVS+PKST+SK KP   DGGS                IKNS PSSKHKSVS+VTK+EVKS
Sbjct: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 60

Query: 61  KTSSSSSRATTKTTTTVT-TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 109
           KT SSSS+ TTKTTTT T TAKVREKKV+NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

[Close]

BLAST of CmoCh05G006210 vs. TrEMBL
Match: D7SUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 76/106 (71.70%), Postives = 84/106 (79.25%), Query Frame = 1


Query: 3   SEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSVSVVTKSEVKSKTSSSSSRATTKTTTTVT 62
           S+ K+ VS  K   +  GS K +   SK KSVS VTKSEVKSK++SSSS+ TTKTTTTV 
Sbjct: 14  SKGKAVVSVTKKKTE--GSTKPT-VDSKQKSVSTVTKSEVKSKSASSSSKTTTKTTTTV- 73

Query: 63  TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
             KVREKKVY LPGQK DPPEEREPLRIFYESLSKQIP+SEMAEFW
Sbjct: 74  --KVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFW 113

[Close]

BLAST of CmoCh05G006210 vs. TrEMBL
Match: A0A067KQR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-23
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPG-NQDGGS-------IKNSN-PSSKHKSVSVVTKSEVKSKTSSSSS 60
           M +E K TV+K K   +QDG S       +KN    SS  K VS VTK+EVKSKT+S++S
Sbjct: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESSNKKPVSTVTKTEVKSKTASTTS 60

Query: 61  RATTKTTTTVTTAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
           + TTKTTT     +VREKKVY+LPGQK DPPEEREPLRIFYESLSKQIP+SEMAEFW
Sbjct: 61  KTTTKTTT-----RVREKKVYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFW 112

[Close]

BLAST of CmoCh05G006210 vs. TrEMBL
Match: B9RRY2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0799210 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-22
Identity = 80/133 (60.15%), Postives = 92/133 (69.17%), Query Frame = 1


Query: 1   MVSEPK-STVSKQKPGN-QDGGS--------IKNSNPSSKH----------KSVSVVTKS 60
           M +E K S V++ KP N QDG S        I N N SSK           KS S VTK+
Sbjct: 1   MATETKQSVVARVKPSNCQDGSSSSSSIKKKINNFNTSSKQQQPPASDSKPKSASTVTKT 60

Query: 61  EVKSKTSSSSSRATT----KTTTTVTT-AKVREKKVYNLPGQKCDPPEEREPLRIFYESL 109
           EVKSKT++SSS+ TT    KTTTT TT  +VREKKV++LPGQ+ DPPEEREPLRIFYESL
Sbjct: 61  EVKSKTTTSSSKTTTTSSSKTTTTTTTKTRVREKKVFSLPGQRYDPPEEREPLRIFYESL 120

[Close]

BLAST of CmoCh05G006210 vs. TrEMBL
Match: B9IKI7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.2e-22
Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPG--NQDGGS-----------IKNSNPS-------SKHKSVSVVTKS 60
           M +E K +V K KP   N DG             I++SN         SK KS+SVVTK+
Sbjct: 1   MATESKQSVVKVKPSSSNFDGSKGKIESSMKAKKIESSNKQQQQSVVDSKDKSISVVTKT 60

Query: 61  EVKSKTSSSSSRATTKTTTTVTTAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIP 109
           EVKSK++ SSS    KTTTT TT +VR+KKVY+LPGQ+ DPPEEREPLRIFYESLSKQIP
Sbjct: 61  EVKSKSAPSSS----KTTTTTTTTRVRQKKVYSLPGQRYDPPEEREPLRIFYESLSKQIP 120

[Close]

BLAST of CmoCh05G006210 vs. TAIR10
Match: AT5G11600.1 (AT5G11600.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-13
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 3   SEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSVSVVTK--SEVKSKTSSSSS-------RA 62
           S+P+S+VS     ++     K   P +  K+++  +   S VK K  ++S+       + 
Sbjct: 48  SKPRSSVSTVTAKSE----AKPKVPINSVKTIATTSAAASLVKGKAQTTSTVVSLVKAKT 107

Query: 63  TTKTTTTVTTAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
           T+ T + V     REKKVY+L GQK DPPEEREPLRIFYESLSKQIP SEMAEFW
Sbjct: 108 TSATVSLVKGKAKREKKVYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFW 158

[Close]

BLAST of CmoCh05G006210 vs. TAIR10
Match: AT1G19990.1 (AT1G19990.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 16  NQDGGSIKNSNPSSKHKSVSV---VTKSEVK---SKTSSSS--SRATTKTTTTVTTAKVR 75
           + D   IK+S   S+ K V     + K + K   SK +SS   S+   K        K R
Sbjct: 51  DDDNKPIKSSVSGSRAKPVKKKEEIDKDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKR 110

Query: 76  EKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
           E+KVY+LPGQK + P+ER+PLRIFYESL KQIP S+MA+ W
Sbjct: 111 ERKVYDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIW 151

[Close]

BLAST of CmoCh05G006210 vs. NCBI nr
Match: gi|659088508|ref|XP_008445018.1| (PREDICTED: neurofilament heavy polypeptide [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-33
Identity = 93/125 (74.40%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPGNQDGGS----------------IKNSNPSSKHKSVSVVTKSEVKS 60
           MVS+PKST+SK KP   DGGS                IKNS PSSKHKSVS+VTKSEVKS
Sbjct: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKSEVKS 60

Query: 61  KTSSSSSRATTKTTTTVT-TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 109
           KT SSSS+ TTKTTTT T TAKVREKK++NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKIFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

[Close]

BLAST of CmoCh05G006210 vs. NCBI nr
Match: gi|700207699|gb|KGN62818.1| (hypothetical protein Csa_2G374600 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33
Identity = 93/125 (74.40%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPGNQDGGS----------------IKNSNPSSKHKSVSVVTKSEVKS 60
           MVS+PKST+SK KP   DGGS                IKNS PSSKHKSVS+VTK+EVKS
Sbjct: 1   MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 60

Query: 61  KTSSSSSRATTKTTTTVT-TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 109
           KT SSSS+ TTKTTTT T TAKVREKKV+NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 61  KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 120

[Close]

BLAST of CmoCh05G006210 vs. NCBI nr
Match: gi|449465141|ref|XP_004150287.1| (PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33
Identity = 93/125 (74.40%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPGNQDGGS----------------IKNSNPSSKHKSVSVVTKSEVKS 60
           MVS+PKST+SK KP   DGGS                IKNS PSSKHKSVS+VTK+EVKS
Sbjct: 67  MVSDPKSTLSKLKP---DGGSRLKLESSDHKKKIDSSIKNSIPSSKHKSVSLVTKAEVKS 126

Query: 61  KTSSSSSRATTKTTTTVT-TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASE 109
           KT SSSS+ TTKTTTT T TAKVREKKV+NLPGQK DPPEEREPLRIFYESLSKQIPASE
Sbjct: 127 KTISSSSKTTTKTTTTTTATAKVREKKVFNLPGQKYDPPEEREPLRIFYESLSKQIPASE 186

[Close]

BLAST of CmoCh05G006210 vs. NCBI nr
Match: gi|225429940|ref|XP_002283869.1| (PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera])

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-23
Identity = 76/106 (71.70%), Postives = 84/106 (79.25%), Query Frame = 1


Query: 3   SEPKSTVSKQKPGNQDGGSIKNSNPSSKHKSVSVVTKSEVKSKTSSSSSRATTKTTTTVT 62
           S+ K+ VS  K   +  GS K +   SK KSVS VTKSEVKSK++SSSS+ TTKTTTTV 
Sbjct: 14  SKGKAVVSVTKKKTE--GSTKPT-VDSKQKSVSTVTKSEVKSKSASSSSKTTTKTTTTV- 73

Query: 63  TAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
             KVREKKVY LPGQK DPPEEREPLRIFYESLSKQIP+SEMAEFW
Sbjct: 74  --KVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFW 113

[Close]

BLAST of CmoCh05G006210 vs. NCBI nr
Match: gi|802633206|ref|XP_012077357.1| (PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas])

HSP 1 Score: 115.2 bits (287), Expect = 8.1e-23
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 1   MVSEPKSTVSKQKPG-NQDGGS-------IKNSN-PSSKHKSVSVVTKSEVKSKTSSSSS 60
           M +E K TV+K K   +QDG S       +KN    SS  K VS VTK+EVKSKT+S++S
Sbjct: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESSNKKPVSTVTKTEVKSKTASTTS 60

Query: 61  RATTKTTTTVTTAKVREKKVYNLPGQKCDPPEEREPLRIFYESLSKQIPASEMAEFW 109
           + TTKTTT     +VREKKVY+LPGQK DPPEEREPLRIFYESLSKQIP+SEMAEFW
Sbjct: 61  KTTTKTTT-----RVREKKVYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFW 112

The following BLAST results are available for this feature:

BLAST of CmoCh05G006210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G006210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLY4_CUCSA	3.5e-33	74.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374600 PE=4 SV=1	[more]
D7SUA5_VITVI	1.9e-23	71.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=...	[more]
A0A067KQR0_JATCU	5.7e-23	64.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1	[more]
B9RRY2_RICCO	4.8e-22	60.15	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0799210 PE=4 SV=1	[more]
B9IKI7_POPTR	8.2e-22	58.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00280g PE=4 SV=1	[more]

BLAST of CmoCh05G006210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11600.1	1.6e-13	46.96	unknown protein	[more]
AT1G19990.1	1.4e-09	45.54	unknown protein	[more]

BLAST of CmoCh05G006210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088508\|ref\|XP_008445018.1\|	3.0e-33	74.40	PREDICTED: neurofilament heavy polypeptide [Cucumis melo]	[more]
gi\|700207699\|gb\|KGN62818.1\|	5.1e-33	74.40	hypothetical protein Csa_2G374600 [Cucumis sativus]	[more]
gi\|449465141\|ref\|XP_004150287.1\|	5.1e-33	74.40	PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus]	[more]
gi\|225429940\|ref\|XP_002283869.1\|	2.8e-23	71.70	PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera]	[more]
gi\|802633206\|ref\|XP_012077357.1\|	8.1e-23	64.10	PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006210.1	CmoCh05G006210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33828	FAMILY NOT NAMED	coord: 21..109 score: 4.9
None	No IPR available	PANTHER	PTHR33828:SF1	SUBFAMILY NOT NAMED	coord: 21..109 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G006210	Cla022214	Watermelon (97103) v1	cmowmB746
CmoCh05G006210	Lsi08G010870	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G006210	Cp4.1LG07g02230	Cucurbita pepo (Zucchini)	cmocpeB747
CmoCh05G006210	Cp4.1LG11g05160	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G006210	MELO3C011144.2	Melon (DHL92) v3.6.1	cmomedB816
CmoCh05G006210	Cla97C08G155440	Watermelon (97103) v2	cmowmbB800
CmoCh05G006210	Bhi04G000695	Wax gourd	cmowgoB0946

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G006210	Watermelon (97103) v2	cmowmbB779
CmoCh05G006210	Wax gourd	cmowgoB0961
CmoCh05G006210	Cucurbita moschata (Rifu)	cmocmoB151
CmoCh05G006210	Cucumber (Gy14) v1	cgycmoB0461
CmoCh05G006210	Cucurbita maxima (Rimu)	cmacmoB194
CmoCh05G006210	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G006210	Wild cucumber (PI 183967)	cmocpiB783
CmoCh05G006210	Cucumber (Chinese Long) v2	cmocuB778
CmoCh05G006210	Melon (DHL92) v3.5.1	cmomeB719
CmoCh05G006210	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G006210	Bottle gourd (USVL1VR-Ls)	cmolsiB718
CmoCh05G006210	Cucumber (Gy14) v2	cgybcmoB239
CmoCh05G006210	Melon (DHL92) v3.6.1	cmomedB820
CmoCh05G006210	Silver-seed gourd	carcmoB0087
CmoCh05G006210	Silver-seed gourd	carcmoB1318
CmoCh05G006210	Cucumber (Chinese Long) v3	cmocucB0919
CmoCh05G006210	Cucumber (Chinese Long) v3	cmocucB0929