Cp4.1LG07g01060 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g01060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nudix hydrolase
Location	Cp4.1LG07 : 555225 .. 557677 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGTTGTCGCCTTATTGCTGGGTATATTCCCACCATTATTTTTAAAGATTCGTAGTCTCCAGCTATTTAATGTTTGTATGTTTGTGTCCTTCCTTGCTTCCAAGTCGTTTTCGTTGACCGTCTTTGTCAAAGTTTTGTGAAAAATGAGGCCGCCATTGTCATTTTTTTTACTACGTAATAGATATTGACTGCTTTGGTTTTCACTGTTGTTCTTGTTTCGGTATTGGTGTTTTTTTGATTCGTTGGTCGGTTCTTTAATCGATTAGGAACTCTATGGTTGTTTTCGGTTTAAACTACATTCCTACAGGTCTGCATAAATTTGAGTTCTTCTTTATCTTTAATGATCTGTGTATCGAGACCTGAGTGCCGAAGTTCTGCCAGATTATTGATTTGTGGTTGGGTATCCAGAATGTTAATCTGTCGCGAAAGTTCTTTGGTGTCACATTGCATTAATGAATCCGTCTTAGTAGGATTTAAGTTGGTTTCAGGAAGTAAAGGGGAAACTAATTCCCTCGTGAATCTATTTATTCTTCTGATCTTACCTCATTCACCTCGGTAAAGCAGCTCGATCGATAGGGAGAGAGGGTTGATCTTTATTTTCTTACTCAAGGTGCTTCATCTCCGGTTTTTGCAGAGCGACAGATTATGATAGCAGATTAATGATTGTTGATATTATTGCATTGGCTTTGGCTGAAGTCTATCACATCCTTGATGACTTGATGGAAACTTGGCCATCTATATTCCTTCCATAAAGCTATCAATAATTTCTTCCCTCTTCATCCAGTTTTGATGATTCAAGCAACGTGAGAAAAAAATACGGATAAATCTGCATAAATGGAATAACATCATGATCTTTGAGCACACTCAGTTGCATCATTCTCTTTTATACTTCTTTCAATGACTTCTTGTAGTTAATAAGAGATGGCTCATTTTAAATTTTATCTCAATGTCCCTTCTGCATTGCATTTTATACATCCGGGCTGCTCGTGTTTTATGTTTTATTTAAACTAATGAAATGCAGTTGAATCAAATGATTGATCAGTCAATGTGGTGGCAGATATAGTTTATGAATGCCTTTCTATTCTTTTGTAGGTGTATTCCTTTTAGGTATAGAAGTTCCGAAGGGAGTAGTGATGAAGTTTCGGATAAAGTCGTGGAGGTGCTTATGATTGACACACCTAGTGGCCCGGGCCTTTTGTTCCCGAAGGTATGAAGTTGTTTCCCTCTCATTTCTGCCTTTCTGCTTCTCTCATATGAAGAAAGTATATGAGCTTATTTTATCTCTAACCATCAGCATTTTCTCTAAAAGGGAGGCTGGGAGAATGACGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATCGAAGAGGCCGGAGTTCGTGGTGAACTTATGGTGAAATAGTACTTTAAATACTTGAATTGTTTTTTTCTCATTTCCTTTTGTGAAAATTGAAGGTTGTTTCATCTAACGTATATATATGATTGGAAGAGGAGTGCTGAGGAGTGTTGAGGGGTGTATCATTTTTAGTAACTTTCTGTAGGACTACGCAATGAAGTGGACGGTCCAGGAGGAGGATCTCTTGAGCCTCTATTACTACCGTGGCTGGTAGATATGATGCATGAATGCACACTTCGGAGAGACTGGGGAGAGCTGTTTAAATGTCCAAACTGGGGAAATATACGAAAGAATAAGCTTAATCATGTTGTTTTGATGTTATATCTGCATTCGTTGGTTAACATATGTGAGATCCCACATTGGTTTGAGAGGGGAACGAAGCATTCTTATAAGGGTGTGGAAACCTCTCCCTAGCCATGAGGCTGACGGCAATATGTAACGGGCCAAAGCAGATGATATCGGTTAACGGTGGGCTTGAGCTGTTACAAATGGTATCGCAGCCAGACACCGAGTGGAGAGGGTCCCCAAGGGGTTGGGATGTGAGATCGTACATCGATTGGAGAGGAAAACGAACATTTCTTAGGAGTCTAACCTTGATACCTAATGGGACAAAGTGGCTAATATCTGCTAGCGACTGGTGTAGGCTATTATTGAATGTTGCATTTTTTGATAGAATTGTTTGGAGTTGTTGGTGTCTGGGGATCCTGCCTTTCTTGTTTTTGTCCGTATGTTCGTTTGCTTACCCTCTCAGAGACCGACACGAAGAAGTGGCTTGTAAAATCTGTTGGCTTTGTTCAGGGGTTCTTAGGAATCTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTCAGTCCAGAAGGATTGTGTAGAGCAGCAATGTATGCTTTGTTTGTGAATGAGGAGCTTGAGTCATGGCCGGAGCAGAACACAAGAAACAGAAGCTGGGTGACCATTCCTGAGGCCATTGAAAGCTGCAGGCACGCGTGGATGAGGGATGCCCTTGTCATTGGGTTCAACAAATGGCATGCACAACATATGAACGATGAATCTTGA

mRNA sequence

ATGCCGATATTGACTGCTTTGGTTTTCACTGTTGTTCTTGTTTCGGTGCTTCATCTCCGGTGTATTCCTTTTAGGTATAGAAGTTCCGAAGGGAGTAGTGATGAAGTTTCGGATAAAGTCGTGGAGGTGCTTATGATTGACACACCTAGTGGCCCGGGCCTTTTGTTCCCGAAGGGAGGCTGGGAGAATGACGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATCGAAGAGGCCGGAGTTCGTGGTGAACTTATGGGGTTCTTAGGAATCTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTCAGTCCAGAAGGATTGTGTAGAGCAGCAATGTATGCTTTGTTTGTGAATGAGGAGCTTGAGTCATGGCCGGAGCAGAACACAAGAAACAGAAGCTGGGTGACCATTCCTGAGGCCATTGAAAGCTGCAGGCACGCGTGGATGAGGGATGCCCTTGTCATTGGGTTCAACAAATGGCATGCACAACATATGAACGATGAATCTTGA

Coding sequence (CDS)

ATGCCGATATTGACTGCTTTGGTTTTCACTGTTGTTCTTGTTTCGGTGCTTCATCTCCGGTGTATTCCTTTTAGGTATAGAAGTTCCGAAGGGAGTAGTGATGAAGTTTCGGATAAAGTCGTGGAGGTGCTTATGATTGACACACCTAGTGGCCCGGGCCTTTTGTTCCCGAAGGGAGGCTGGGAGAATGACGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATCGAAGAGGCCGGAGTTCGTGGTGAACTTATGGGGTTCTTAGGAATCTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTCAGTCCAGAAGGATTGTGTAGAGCAGCAATGTATGCTTTGTTTGTGAATGAGGAGCTTGAGTCATGGCCGGAGCAGAACACAAGAAACAGAAGCTGGGTGACCATTCCTGAGGCCATTGAAAGCTGCAGGCACGCGTGGATGAGGGATGCCCTTGTCATTGGGTTCAACAAATGGCATGCACAACATATGAACGATGAATCTTGA

Protein sequence

MPILTALVFTVVLVSVLHLRCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPEAIESCRHAWMRDALVIGFNKWHAQHMNDES

Homology

[Close]

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.6e-59
Identity = 103/146 (70.55%), Postives = 118/146 (80.82%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           CIPFRY +S+   +  S KV++VLMI + SGPGLLFPKGGWENDETV EAA REA+EEAG
Sbjct: 25  CIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAG 84

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           VRG LM FLG Y FKSK+ QDEFSPEGLC+AAMYAL+V EEL +WPE  TR R W+TI E
Sbjct: 85  VRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEE 144

Query: 141 AIESCRHAWMRDALVIGFNKWHAQHM 167
           A+ESCRH WM+DALV GF KWH + M
Sbjct: 145 AVESCRHPWMKDALVEGFCKWHKEKM 170

[Close]

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.0e-32
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 21  CIPFRY-RSSEGSSDEVSDKV--VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIE 80
           CIP+R  ++ E   D   D V  +EVLM+ +P+   L+FPKGGWE+DETV EAA REAIE
Sbjct: 25  CIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIE 84

Query: 81  EAGVRGELMGF-LGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWV 140
           EAGV+G L    LG++ F+SK+   E    G C+  M+AL V EELE WPE+  R R W+
Sbjct: 85  EAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWL 144

Query: 141 TIPEAIESCRHAWMRDAL 155
           T+ EA+E CR+ WM+ AL
Sbjct: 145 TVKEALELCRYEWMQRAL 162

[Close]

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.5e-30
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           C+P+RY+  E +   V  +V++VL++    G G+LFPKGGWE DE++EEAA+RE IEEAG
Sbjct: 65  CVPYRYKKQEVNG--VETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAG 124

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           V GEL   LG + +KSK  +     +G     M+AL V++E E WPE   R R WV++ E
Sbjct: 125 VTGELEEKLGKWQYKSK--RHSIIHDGY----MFALLVSQEFERWPEAEMRQRRWVSLDE 184

Query: 141 AIESCRHAWMRDAL 155
           A E C++ WMR+AL
Sbjct: 185 AREVCQNWWMREAL 190

[Close]

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 21  CIPFRY-RSSEGSSDEVS-DKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 80
           CIP+R  +  E  S  V  +  ++VLMI +P+   L+FPKGGWE+DETV EAA REA+EE
Sbjct: 25  CIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEE 84

Query: 81  AGVRGELM-GFLGIYHFKSKTQQDEFS--PEGLCRAAMYALFVNEELESWPEQNTRNRSW 140
           AGV+G L    LG++ F+SK+   E      G C+  M+AL V EEL  WPEQ+ R R W
Sbjct: 85  AGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRW 144

Query: 141 VTIPEAIESCRHAWMRDAL 155
           + + EA+E CR+ WM+ AL
Sbjct: 145 LNVKEALELCRYEWMQSAL 163

[Close]

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           C+P+R++ S  +  ++SD+V EVL+I +  G  L+FPKGGWE DE+VEEAA RE +EEAG
Sbjct: 30  CVPYRFKLS--NDGKISDEV-EVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAG 89

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           V G +   LG + F SK++   +  EGL    M+ + V E+LE WPEQ+ R R W+ + E
Sbjct: 90  VLGNVEHQLGKWDFLSKSRGTYY--EGL----MFPMLVTEQLELWPEQHVRQRIWMNVTE 149

Query: 141 AIESCRHAWMRDAL 155
           A E+CR  WM++AL
Sbjct: 150 AREACRDWWMKEAL 154

[Close]

BLAST of Cp4.1LG07g01060 vs. TrEMBL
Match: M5X2H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012156mg PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.8e-65
Identity = 113/146 (77.40%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           CIPFRY++S+ + D  S+K++EVLMI++PSGPGLLFPKGGWENDETVEEAAVREA+EEAG
Sbjct: 25  CIPFRYKNSDETGDANSEKIIEVLMINSPSGPGLLFPKGGWENDETVEEAAVREAVEEAG 84

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           VRGELM FLG YHFKSKT QDEFSPEG+CRAAM+ALFV EELESWPEQ+TRNR+W+T+ E
Sbjct: 85  VRGELMDFLGFYHFKSKTHQDEFSPEGVCRAAMFALFVKEELESWPEQSTRNRTWLTVAE 144

Query: 141 AIESCRHAWMRDALVIGFNKWHAQHM 167
           A  SCRHAWMR+AL  GF+KWHA+ M
Sbjct: 145 AFVSCRHAWMREALQDGFSKWHAEKM 170

[Close]

BLAST of Cp4.1LG07g01060 vs. TrEMBL
Match: A0A0A0KJ02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401320 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.1e-63
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 1


Query: 45  MIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMGFLGIYHFKSKTQQDEFS 104
           MIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMGFLG YHFKSKTQQDEFS
Sbjct: 1   MIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMGFLGDYHFKSKTQQDEFS 60

Query: 105 PEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPEAIESCRHAWMRDALVIGFNKWHAQ 164
           P+GLCRAAMYAL V EELE WPEQNTRNRSWVTIPEAIE CRHAWM DALVIGFNKWHA+
Sbjct: 61  PDGLCRAAMYALLVTEELECWPEQNTRNRSWVTIPEAIEKCRHAWMTDALVIGFNKWHAE 120

Query: 165 HMNDE 170
           + +DE
Sbjct: 121 NTSDE 125

[Close]

BLAST of Cp4.1LG07g01060 vs. TrEMBL
Match: F6HVD0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00690 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.1e-63
Identity = 113/143 (79.02%), Postives = 128/143 (89.51%), Query Frame = 1


Query: 20  RCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 79
           RCIPF++R+ +  S+E S+KVVEVLMI++PSGPGLLFPKGGWENDETVEEAA+REAIEEA
Sbjct: 40  RCIPFKHRNPDEGSNENSEKVVEVLMINSPSGPGLLFPKGGWENDETVEEAAIREAIEEA 99

Query: 80  GVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIP 139
           GVRG LM FLG YHFKSKT QDEFSPEG C+AAM+ALFV EELESWPEQNTR RSW+TIP
Sbjct: 100 GVRGVLMEFLGHYHFKSKTLQDEFSPEGSCKAAMFALFVKEELESWPEQNTRRRSWLTIP 159

Query: 140 EAIESCRHAWMRDALVIGFNKWH 163
           EA E+CRH WMR+AL  GF+KWH
Sbjct: 160 EAYENCRHPWMREALKDGFSKWH 182

[Close]

BLAST of Cp4.1LG07g01060 vs. TrEMBL
Match: A5C8Z2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007719 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-62
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           CIPF++R+ +  S+E S+KVVEVLMI++PSGPGLLFPKGGWENDETVEEAA+REAIEEAG
Sbjct: 240 CIPFKHRNPDEGSNENSEKVVEVLMINSPSGPGLLFPKGGWENDETVEEAAIREAIEEAG 299

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           VRG LM FLG YHFKSKT QDEFSPEG C+AAM+ALFV EELESWPEQNTR RSW+TIPE
Sbjct: 300 VRGVLMEFLGHYHFKSKTLQDEFSPEGSCKAAMFALFVKEELESWPEQNTRRRSWLTIPE 359

Query: 141 AIESCRHAWMRDALVIGFNKWH 163
           A E+CRH WMR+AL  GF+KWH
Sbjct: 360 AYENCRHPWMREALKDGFSKWH 381

[Close]

BLAST of Cp4.1LG07g01060 vs. TrEMBL
Match: A0A061FR19_THECC (Nudix hydrolase OS=Theobroma cacao GN=TCM_045034 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.1e-62
Identity = 114/145 (78.62%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 20  RCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 79
           RCIPFRYRSS+  +D  S+KVVEVLMI++ SGPGLLFPKGGWENDETVEEAAVREAIEEA
Sbjct: 61  RCIPFRYRSSD-ETDVNSEKVVEVLMINSTSGPGLLFPKGGWENDETVEEAAVREAIEEA 120

Query: 80  GVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIP 139
           GV+G+LM F+G YHFKSKT QDEFSPEGLCRAAM+ALFV EEL+SWPEQ+TR RSW+TIP
Sbjct: 121 GVKGDLMDFIGYYHFKSKTHQDEFSPEGLCRAAMFALFVKEELDSWPEQSTRTRSWLTIP 180

Query: 140 EAIESCRHAWMRDALVIGFNKWHAQ 165
           EA++SCRHAWM++AL  GF  W AQ
Sbjct: 181 EAVQSCRHAWMKEALEDGFCVWLAQ 204

[Close]

BLAST of Cp4.1LG07g01060 vs. TAIR10
Match: AT3G12600.1 (AT3G12600.1 nudix hydrolase homolog 16)

HSP 1 Score: 228.0 bits (580), Expect = 4.3e-60
Identity = 103/146 (70.55%), Postives = 118/146 (80.82%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           CIPFRY +S+   +  S KV++VLMI + SGPGLLFPKGGWENDETV EAA REA+EEAG
Sbjct: 25  CIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAG 84

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           VRG LM FLG Y FKSK+ QDEFSPEGLC+AAMYAL+V EEL +WPE  TR R W+TI E
Sbjct: 85  VRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEE 144

Query: 141 AIESCRHAWMRDALVIGFNKWHAQHM 167
           A+ESCRH WM+DALV GF KWH + M
Sbjct: 145 AVESCRHPWMKDALVEGFCKWHKEKM 170

[Close]

BLAST of Cp4.1LG07g01060 vs. TAIR10
Match: AT1G12880.1 (AT1G12880.1 nudix hydrolase homolog 12)

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-33
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 21  CIPFRY-RSSEGSSDEVSDKV--VEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIE 80
           CIP+R  ++ E   D   D V  +EVLM+ +P+   L+FPKGGWE+DETV EAA REAIE
Sbjct: 25  CIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIE 84

Query: 81  EAGVRGELMGF-LGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWV 140
           EAGV+G L    LG++ F+SK+   E    G C+  M+AL V EELE WPE+  R R W+
Sbjct: 85  EAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWL 144

Query: 141 TIPEAIESCRHAWMRDAL 155
           T+ EA+E CR+ WM+ AL
Sbjct: 145 TVKEALELCRYEWMQRAL 162

[Close]

BLAST of Cp4.1LG07g01060 vs. TAIR10
Match: AT1G18300.1 (AT1G18300.1 nudix hydrolase homolog 4)

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-31
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           C+P+RY+  E +   V  +V++VL++    G G+LFPKGGWE DE++EEAA+RE IEEAG
Sbjct: 65  CVPYRYKKQEVNG--VETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAG 124

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           V GEL   LG + +KSK  +     +G     M+AL V++E E WPE   R R WV++ E
Sbjct: 125 VTGELEEKLGKWQYKSK--RHSIIHDGY----MFALLVSQEFERWPEAEMRQRRWVSLDE 184

Query: 141 AIESCRHAWMRDAL 155
           A E C++ WMR+AL
Sbjct: 185 AREVCQNWWMREAL 190

[Close]

BLAST of Cp4.1LG07g01060 vs. TAIR10
Match: AT3G26690.1 (AT3G26690.1 nudix hydrolase homolog 13)

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-30
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 21  CIPFRY-RSSEGSSDEVS-DKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 80
           CIP+R  +  E  S  V  +  ++VLMI +P+   L+FPKGGWE+DETV EAA REA+EE
Sbjct: 25  CIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEE 84

Query: 81  AGVRGELM-GFLGIYHFKSKTQQDEFS--PEGLCRAAMYALFVNEELESWPEQNTRNRSW 140
           AGV+G L    LG++ F+SK+   E      G C+  M+AL V EEL  WPEQ+ R R W
Sbjct: 85  AGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRW 144

Query: 141 VTIPEAIESCRHAWMRDAL 155
           + + EA+E CR+ WM+ AL
Sbjct: 145 LNVKEALELCRYEWMQSAL 163

[Close]

BLAST of Cp4.1LG07g01060 vs. TAIR10
Match: AT2G01670.1 (AT2G01670.1 nudix hydrolase homolog 17)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-29
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 1


Query: 21  CIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAG 80
           C+P+R++ S  +  ++SD+V EVL+I +  G  L+FPKGGWE DE+VEEAA RE +EEAG
Sbjct: 30  CVPYRFKLS--NDGKISDEV-EVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAG 89

Query: 81  VRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIPE 140
           V G +   LG + F SK++   +  EGL    M+ + V E+LE WPEQ+ R R W+ + E
Sbjct: 90  VLGNVEHQLGKWDFLSKSRGTYY--EGL----MFPMLVTEQLELWPEQHVRQRIWMNVTE 149

Query: 141 AIESCRHAWMRDAL 155
           A E+CR  WM++AL
Sbjct: 150 AREACRDWWMKEAL 154

[Close]

BLAST of Cp4.1LG07g01060 vs. NCBI nr
Match: gi|659089213|ref|XP_008445386.1| (PREDICTED: nudix hydrolase 16, mitochondrial isoform X4 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 4.3e-78
Identity = 137/151 (90.73%), Postives = 145/151 (96.03%), Query Frame = 1


Query: 19  LRCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 78
           +RCIPFRYRSS+GSSDE+SDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE
Sbjct: 1   MRCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 60

Query: 79  AGVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTI 138
           AGVRGELMGFLG YHFKSKTQQDEFSP+GLCRAAMYAL V EELE WPEQNTRNRSWVTI
Sbjct: 61  AGVRGELMGFLGDYHFKSKTQQDEFSPDGLCRAAMYALLVTEELECWPEQNTRNRSWVTI 120

Query: 139 PEAIESCRHAWMRDALVIGFNKWHAQHMNDE 170
           PEAIE CRHAWMRDAL IGFNKWHA++++DE
Sbjct: 121 PEAIEKCRHAWMRDALAIGFNKWHAENISDE 151

[Close]

BLAST of Cp4.1LG07g01060 vs. NCBI nr
Match: gi|659089209|ref|XP_008445384.1| (PREDICTED: nudix hydrolase 16, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 5.6e-78
Identity = 137/152 (90.13%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 18  HLRCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIE 77
           H+ CIPFRYRSS+GSSDE+SDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIE
Sbjct: 17  HVWCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIE 76

Query: 78  EAGVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVT 137
           EAGVRGELMGFLG YHFKSKTQQDEFSP+GLCRAAMYAL V EELE WPEQNTRNRSWVT
Sbjct: 77  EAGVRGELMGFLGDYHFKSKTQQDEFSPDGLCRAAMYALLVTEELECWPEQNTRNRSWVT 136

Query: 138 IPEAIESCRHAWMRDALVIGFNKWHAQHMNDE 170
           IPEAIE CRHAWMRDAL IGFNKWHA++++DE
Sbjct: 137 IPEAIEKCRHAWMRDALAIGFNKWHAENISDE 168

[Close]

BLAST of Cp4.1LG07g01060 vs. NCBI nr
Match: gi|659089211|ref|XP_008445385.1| (PREDICTED: nudix hydrolase 16, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 7.4e-78
Identity = 137/150 (91.33%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 20  RCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 79
           RCIPFRYRSS+GSSDE+SDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA
Sbjct: 14  RCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 73

Query: 80  GVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIP 139
           GVRGELMGFLG YHFKSKTQQDEFSP+GLCRAAMYAL V EELE WPEQNTRNRSWVTIP
Sbjct: 74  GVRGELMGFLGDYHFKSKTQQDEFSPDGLCRAAMYALLVTEELECWPEQNTRNRSWVTIP 133

Query: 140 EAIESCRHAWMRDALVIGFNKWHAQHMNDE 170
           EAIE CRHAWMRDAL IGFNKWHA++++DE
Sbjct: 134 EAIEKCRHAWMRDALAIGFNKWHAENISDE 163

[Close]

BLAST of Cp4.1LG07g01060 vs. NCBI nr
Match: gi|778715804|ref|XP_011657457.1| (PREDICTED: nudix hydrolase 16, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 137/151 (90.73%), Postives = 144/151 (95.36%), Query Frame = 1


Query: 19  LRCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 78
           +RCIPFRYRSS+GSSDE+SDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE
Sbjct: 1   MRCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEE 60

Query: 79  AGVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTI 138
           AGVRGELMGFLG YHFKSKTQQDEFSP+GLCRAAMYAL V EELE WPEQNTRNRSWVTI
Sbjct: 61  AGVRGELMGFLGDYHFKSKTQQDEFSPDGLCRAAMYALLVTEELECWPEQNTRNRSWVTI 120

Query: 139 PEAIESCRHAWMRDALVIGFNKWHAQHMNDE 170
           PEAIE CRHAWM DALVIGFNKWHA++ +DE
Sbjct: 121 PEAIEKCRHAWMTDALVIGFNKWHAENTSDE 151

[Close]

BLAST of Cp4.1LG07g01060 vs. NCBI nr
Match: gi|778715801|ref|XP_011657456.1| (PREDICTED: nudix hydrolase 16, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.1e-77
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 1


Query: 20  RCIPFRYRSSEGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 79
           RCIPFRYRSS+GSSDE+SDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA
Sbjct: 14  RCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEA 73

Query: 80  GVRGELMGFLGIYHFKSKTQQDEFSPEGLCRAAMYALFVNEELESWPEQNTRNRSWVTIP 139
           GVRGELMGFLG YHFKSKTQQDEFSP+GLCRAAMYAL V EELE WPEQNTRNRSWVTIP
Sbjct: 74  GVRGELMGFLGDYHFKSKTQQDEFSPDGLCRAAMYALLVTEELECWPEQNTRNRSWVTIP 133

Query: 140 EAIESCRHAWMRDALVIGFNKWHAQHMNDE 170
           EAIE CRHAWM DALVIGFNKWHA++ +DE
Sbjct: 134 EAIEKCRHAWMTDALVIGFNKWHAENTSDE 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g01060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUD16_ARATH	7.6e-59	70.55	Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1	[more]
NUD12_ARATH	8.0e-32	51.45	Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1	[more]
NUDT4_ARATH	7.5e-30	47.76	Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1	[more]
NUD13_ARATH	8.2e-29	48.92	Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1	[more]
NUD17_ARATH	1.2e-27	47.76	Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g01060 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X2H7_PRUPE	3.8e-65	77.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012156mg PE=4 SV=1	[more]
A0A0A0KJ02_CUCSA	6.1e-63	91.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401320 PE=4 SV=1	[more]
F6HVD0_VITVI	6.1e-63	79.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00690 PE=4 SV=...	[more]
A5C8Z2_VITVI	2.3e-62	78.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007719 PE=4 SV=1	[more]
A0A061FR19_THECC	5.1e-62	78.62	Nudix hydrolase OS=Theobroma cacao GN=TCM_045034 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g01060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12600.1	4.3e-60	70.55	nudix hydrolase homolog 16	[more]
AT1G12880.1	4.5e-33	51.45	nudix hydrolase homolog 12	[more]
AT1G18300.1	4.2e-31	47.76	nudix hydrolase homolog 4	[more]
AT3G26690.1	4.6e-30	48.92	nudix hydrolase homolog 13	[more]
AT2G01670.1	6.7e-29	47.76	nudix hydrolase homolog 17	[more]

BLAST of Cp4.1LG07g01060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089213\|ref\|XP_008445386.1\|	4.3e-78	90.73	PREDICTED: nudix hydrolase 16, mitochondrial isoform X4 [Cucumis melo]	[more]
gi\|659089209\|ref\|XP_008445384.1\|	5.6e-78	90.13	PREDICTED: nudix hydrolase 16, mitochondrial isoform X2 [Cucumis melo]	[more]
gi\|659089211\|ref\|XP_008445385.1\|	7.4e-78	91.33	PREDICTED: nudix hydrolase 16, mitochondrial isoform X3 [Cucumis melo]	[more]
gi\|778715804\|ref\|XP_011657457.1\|	1.3e-77	90.73	PREDICTED: nudix hydrolase 16, mitochondrial isoform X3 [Cucumis sativus]	[more]
gi\|778715801\|ref\|XP_011657456.1\|	2.1e-77	91.33	PREDICTED: nudix hydrolase 16, mitochondrial isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR020084	NUDIX_hydrolase_CS
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR000086	NUDIX_hydrolase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g01060.1	Cp4.1LG07g01060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 43..150 score: 2.7
IPR000086	NUDIX hydrolase domain	PROFILE	PS51462	NUDIX	coord: 14..158 score: 1
IPR015797	NUDIX hydrolase domain-like	GENE3D	G3DSA:3.90.79.10		coord: 31..154 score: 4.4
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 42..165 score: 2.44
IPR020084	NUDIX hydrolase, conserved site	PROSITE	PS00893	NUDIX_BOX	coord: 59..80 scor
None	No IPR available	unknown	Coil	Coil	coord: 163..170 scor
None	No IPR available	PANTHER	PTHR12629	DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE	coord: 21..162 score: 2.4
None	No IPR available	PANTHER	PTHR12629:SF9	NUDIX HYDROLASE 16, MITOCHONDRIAL	coord: 21..162 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g01060	Cucsa.005110	Cucumber (Gy14) v1	cgycpeB0091
Cp4.1LG07g01060	CmaCh12G001260	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g01060	CmaCh05G004690	Cucurbita maxima (Rimu)	cmacpeB791
Cp4.1LG07g01060	CmoCh12G001020	Cucurbita moschata (Rifu)	cmocpeB174
Cp4.1LG07g01060	CmoCh05G004920	Cucurbita moschata (Rifu)	cmocpeB744
Cp4.1LG07g01060	Cla022057	Watermelon (97103) v1	cpewmB783
Cp4.1LG07g01060	Csa6G401320	Cucumber (Chinese Long) v2	cpecuB842
Cp4.1LG07g01060	MELO3C011387	Melon (DHL92) v3.5.1	cpemeB755
Cp4.1LG07g01060	ClCG08G010740	Watermelon (Charleston Gray)	cpewcgB749
Cp4.1LG07g01060	CSPI06G20760	Wild cucumber (PI 183967)	cpecpiB845
Cp4.1LG07g01060	MELO3C011387.2	Melon (DHL92) v3.6.1	cpemedB891
Cp4.1LG07g01060	CsaV3_6G035800	Cucumber (Chinese Long) v3	cpecucB1037
Cp4.1LG07g01060	CsGy6G020110	Cucumber (Gy14) v2	cgybcpeB880
Cp4.1LG07g01060	Carg09243	Silver-seed gourd	carcpeB0207
Cp4.1LG07g01060	Carg20562	Silver-seed gourd	carcpeB0925

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g01060	Cp4.1LG11g04100	Cucurbita pepo (Zucchini)	cpecpeB138

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g01060	Wax gourd	cpewgoB1049
Cp4.1LG07g01060	Bottle gourd (USVL1VR-Ls)	cpelsiB686