Cp4.1LG06g00950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g00950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial 39S ribosomal protein L53
LocationCp4.1LG06 : 402601 .. 405203 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTTGGTAAAAGATAACTGGGCCAGGCCCATCATCCTTTGGACATTCTATTATATTTCGGTTGGCAAGAGATAACTGGGCCAGGCCCATCAATATTTTTTGAACCCATTTTTGCACATTCTATTATATTTCGATTGGTTACAGATAACTGGGCCAGGTCCATTAATGTTCTCTGGACTTTCTATTGTATTTGGCTTGGTCAGAGATAACTGGACCAGGCCCATTAATGTTTTTTTTTGGTATTATATTTTATTTCACTTGGCAGGAGATAACTGGGCCAGGCACATTAATGTTCTTTGGACATTTTATCTTATTTGGGTTGGTAAGATATAAATTGGGTCAAGCCCATCAATTTAATTTGGACATTCTATTCTATTTGGGTTGGTAAGAGATAACTGGGTCAGGCCCATTAATGTTTTTTTTGGACATACTATTTATTTGGGTTGGTAAAAGATAACTGGGCCAGGCCCATCATTCTTTGACATTCTATTATATTTCGGTTGATAAGAGATAACTGGGCCAGGCCCATCAATATTTTTTGAACCCATTAATATTTGTTTTTGCCCATTCTATTCTATTTCGATTGGTTACAGATTATTGGGCCAGGCCCATTAATATTTTTTGAACCTATTAATATTTTTTTGACATTCTATTCTATTTCGATTGGTTACAGATAATTGGGCCAGGCCCATTAATGTTCTCTAGACTTTGTATTGTATTTGGGTTGGTCATCTAACTGTGCTAGGCCCATTAATGTTCTCTAGACTTTCTATTTTATTTGGGTATTCTATTCTATTTCGATTGGTTACAGATAATTGGGCCAGGCCCATTAATGTTCTCTAGACTTTGTATTGTATTTGGGTTGGTCATCTAACTGTGCTAGGCCCATTAATGTTCTCTAGACTTTCTATTTTATTTGGGTATTCTATTCTATTTCGATTGGTTACAGATAATTGGGCCAGGCCCATTAATGTTCTCTAGACTTTGTATTGTATTTGGGTTGGTCATCTAACTGTGCTAGGCCCATTAATGTTCTCTAGACTTTCTATTTTATTTGGGTTGGTCAGAGATGACTGGGCCAGGCCCAAAAATGTTCTCTTAACATTATTTATTTGGGTTGGCAAGAGATAACTGGGCCAGGCCATCTATGTTCTTTTCATTCTATTTATATATTTGGGTTGGTAAGATTACTGGGCCTAGCAAGTAATTATTTTACAAATTTATTGTGTATACGTGATGTGAGAATATATTTAGAAGGGTAGAAATTGAGAAAACGCTGCATTTAATAAACTGAAAGAAAAACAGTGGCCATTACCTTCTTCATTACCTTCTTCGGGAGGCCATTACCTTCTTCGGGAGTCCCCAATCATTTTTTATCGCAGGGGTTTACGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGTTCTTCGGGAGTCCCCAATCATTTTTTATCGCAGGGGTTTAGGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTTAGGCGAAGAGGAAGAAGCAATGATTGCAGGGGTTAAGGCGAAGAGGAAGAAGCAGCGATGTTGAAGTTCCTGTCTAAAGTGAAGGTCGAATTCAATGCCTTAGATCCACGCTTAGCATCTTGCATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTCGAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGATGACCACCCGCCCCAGATCGCCGTCACTTTTGTCAACGGAGTCGAAGAGGTTTTTGACGCTACATCTACTCCTGCTCAAACAATCAGGAATACGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAGCTCAATCAACCCGCCCCCAGTATCAAGGTTCGTCTTCTTCTCCTCCCTTTATGTGAGCGTTTCTCGGTCCTCTTTTGGTTGAGTTTTCATTTTGGGCACTACATGTGGCATTTTGTCGAACAACATATGCACACGAAGAGCTTCACGAACTTCCTTCTTTTGGAGTGGAATTTTTGCAACTGTGAAATTTGTATTTGCAATCTTACTTCGTTGTTCTCGTATATATACATTCTCTTCATATACTTTGTTGTCATTGCATCTCAAGCTAATGTAAGAGTACCCAGTGCTTCTATCTTATTTAGCAAGAATTATAGTTTGAAATTGACTGGTAGGGGTTTGTTACGCCGTGCTCGTGCTTTCACAAATATCGGAAAACTACAATTTGCCTGCATTTACTAGGAAATTGGTTTAAACGATCTGTTACCAATAGTGTGTATCCAAAGATCTTAGAAAGTTTCGAGAACATTGATAAGGACAGGAAACACTATTCTCAAAGCCAACCATACTCCCCTTTCATTCATTGTTATGGTAGTATGGTAAACATGGCAATGGCAATGGACACAAGCCAGTGACCATTCTACCATCTCTAGCAAAGCATATAACAGCTTCGTTCAGAAAATAG

mRNA sequence

ATGTGGATAACTGGGCCAGGTCCATTAATGTTCTCTGGACTTTCTATTGTATTTGGCTTGGTCAGAGATAACTGGACCAGGCCCATTAATGGGTTTACGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGGGTTTAGGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTTAGGCGAAGAGGAAGAAGCAATGATTGCAGGGGTCGAATTCAATGCCTTAGATCCACGCTTAGCATCTTGCATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTCGAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGATGACCACCCGCCCCAGATCGCCGTCACTTTTGTCAACGGAGTCGAAGAGGTTTTTGACGCTACATCTACTCCTGCTCAAACAATCAGGAATACGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAGCTCAATCAACCCGCCCCCAGTATCAAGTATGGTAAACATGGCAATGGCAATGGACACAAGCCAGTGACCATTCTACCATCTCTAGCAAAGCATATAACAGCTTCGTTCAGAAAATAG

Coding sequence (CDS)

ATGTGGATAACTGGGCCAGGTCCATTAATGTTCTCTGGACTTTCTATTGTATTTGGCTTGGTCAGAGATAACTGGACCAGGCCCATTAATGGGTTTACGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGGGTTTAGGCCATTACCTTCTTCGGGAGTCCCCAATGGCCATTACCTTCTTCGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTGGGAGTCCCCAATCATTTTTGATCGCAGGGGTTTAGGCGAAGAGGAAGAAGCAATGATTGCAGGGGTCGAATTCAATGCCTTAGATCCACGCTTAGCATCTTGCATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTCGAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGATGACCACCCGCCCCAGATCGCCGTCACTTTTGTCAACGGAGTCGAAGAGGTTTTTGACGCTACATCTACTCCTGCTCAAACAATCAGGAATACGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAGCTCAATCAACCCGCCCCCAGTATCAAGTATGGTAAACATGGCAATGGCAATGGACACAAGCCAGTGACCATTCTACCATCTCTAGCAAAGCATATAACAGCTTCGTTCAGAAAATAG

Protein sequence

MWITGPGPLMFSGLSIVFGLVRDNWTRPINGFTPLPSSGVPNGHYLLRGFRPLPSSGVPNGHYLLRESPIIFDRRGWESPIIFDRRGLGEEEEAMIAGVEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIKYGKHGNGNGHKPVTILPSLAKHITASFRK
Homology
[Close]
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match: A0A0A0LGG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-49
Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD
Sbjct: 10  IEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATSTPAQTIR+ ILEKGQLLETEQMFREAGE WPVIIPDEEL QP   IK
Sbjct: 70  ATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match: A0A061FKE0_THECC (Mitochondrial OS=Theobroma cacao GN=TCM_034190 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-48
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQ+ VKRRTDDHPPQIAVTFVNGVEEVF+
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQVQVKRRTDDHPPQIAVTFVNGVEEVFN 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATSTPAQTIRN ILEKGQLLETEQMFREAGE WPVIIP+EEL+Q  P  K
Sbjct: 70  ATSTPAQTIRNMILEKGQLLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match: A0A0D2QL50_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-48
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTFVNGVEE FD
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTFVNGVEEAFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK-YGKHGNGNG 218
           ATSTPAQTIR  ILEKGQ+LETEQMFREAGE WPVIIP+EEL+Q  P  K +    +G G
Sbjct: 70  ATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKVWALFSSGQG 129

Query: 219 -HKPVTILPSLAKHITAS 235
             K  +   +L+ H T S
Sbjct: 130 KQKRRSSNANLSDHFTGS 147

[Close]
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match: A0A067KL23_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08242 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.7e-48
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQI VTFVNGVEEVFD
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTFVNGVEEVFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
            T  PAQTIR  ILEKGQLLETEQMFREAGE WPVIIP+EEL+ PAP  K
Sbjct: 70  GTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match: A0A0D2TTX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTFVNGVEE FD
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTFVNGVEEAFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATSTPAQTIR  ILEKGQ+LETEQMFREAGE WPVIIP+EEL+Q  P  K
Sbjct: 70  ATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. TAIR10
Match: AT5G39600.1 (AT5G39600.1 Ribosomal protein L53, mitochondrial (InterPro:IPR019716))

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-46
Identity = 87/110 (79.09%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FD
Sbjct: 10  IEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTFVNGVEEAFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           A +T AQ+IR  IL+KGQ LETEQMFREAGE WPVIIPDEEL Q AP +K
Sbjct: 70  AAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match: gi|449460211|ref|XP_004147839.1| (PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD
Sbjct: 10  IEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATSTPAQTIR+ ILEKGQLLETEQMFREAGE WPVIIPDEEL QP   IK
Sbjct: 70  ATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match: gi|590594047|ref|XP_007017744.1| (Mitochondrial [Theobroma cacao])

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQ+ VKRRTDDHPPQIAVTFVNGVEEVF+
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQVQVKRRTDDHPPQIAVTFVNGVEEVFN 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATSTPAQTIRN ILEKGQLLETEQMFREAGE WPVIIP+EEL+Q  P  K
Sbjct: 70  ATSTPAQTIRNMILEKGQLLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match: gi|659133011|ref|XP_008466507.1| (PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD
Sbjct: 10  IEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
           ATS  AQTIRN ILEKGQLLETEQMFREAGE WPVIIP+EEL QP  SIK
Sbjct: 70  ATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEEELKQPLTSIK 119

[Close]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match: gi|823230029|ref|XP_012447752.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii])

HSP 1 Score: 199.9 bits (507), Expect = 5.0e-48
Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTFVNGVEE FD
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTFVNGVEEAFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK-YGKHGNGNG 218
           ATSTPAQTIR  ILEKGQ+LETEQMFREAGE WPVIIP+EEL+Q  P  K +    +G G
Sbjct: 70  ATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKVWALFSSGQG 129

Query: 219 -HKPVTILPSLAKHITAS 235
             K  +   +L+ H T S
Sbjct: 130 KQKRRSSNANLSDHFTGS 147

[Close]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match: gi|643729014|gb|KDP36951.1| (hypothetical protein JCGZ_08242 [Jatropha curcas])

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 99  VEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFD 158
           +EFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQI VTFVNGVEEVFD
Sbjct: 10  IEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTFVNGVEEVFD 69

Query: 159 ATSTPAQTIRNTILEKGQLLETEQMFREAGETWPVIIPDEELNQPAPSIK 209
            T  PAQTIR  ILEKGQLLETEQMFREAGE WPVIIP+EEL+ PAP  K
Sbjct: 70  GTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTK 119

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g00950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g00950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGG5_CUCSA1.4e-4990.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1[more]
A0A061FKE0_THECC2.0e-4888.18Mitochondrial OS=Theobroma cacao GN=TCM_034190 PE=4 SV=1[more]
A0A0D2QL50_GOSRA3.5e-4873.91Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A067KL23_JATCU7.7e-4885.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08242 PE=4 SV=1[more]
A0A0D2TTX8_GOSRA1.7e-4786.36Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
BLAST of Cp4.1LG06g00950 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39600.12.2e-4679.09 Ribosomal protein L53, mitochondrial (InterPro:IPR019716)[more]
BLAST of Cp4.1LG06g00950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460211|ref|XP_004147839.1|2.0e-4990.91PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus][more]
gi|590594047|ref|XP_007017744.1|2.9e-4888.18Mitochondrial [Theobroma cacao][more]
gi|659133011|ref|XP_008466507.1|3.8e-4889.09PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo][more]
gi|823230029|ref|XP_012447752.1|5.0e-4873.91PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii][more]
gi|643729014|gb|KDP36951.1|1.1e-4785.45hypothetical protein JCGZ_08242 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019716Ribosomal_L53_mit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g00950.1Cp4.1LG06g00950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019716Ribosomal protein L53, mitochondrialPFAMPF10780MRP_L53coord: 101..152
score: 1.8
NoneNo IPR availablePANTHERPTHR33618FAMILY NOT NAMEDcoord: 99..209
score: 2.9
NoneNo IPR availablePANTHERPTHR33618:SF139S RIBOSOMAL PROTEIN L53, MITOCHONDRIALcoord: 99..209
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g00950Cucsa.342840Cucumber (Gy14) v1cgycpeB0896
Cp4.1LG06g00950CmaCh09G001220Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g00950CmaCh01G019560Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g00950CmoCh01G020140Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g00950CmoCh09G001190Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g00950Cla020814Watermelon (97103) v1cpewmB765
Cp4.1LG06g00950Csa3G866470Cucumber (Chinese Long) v2cpecuB779
Cp4.1LG06g00950MELO3C003771Melon (DHL92) v3.5.1cpemeB726
Cp4.1LG06g00950ClCG05G018520Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g00950CSPI03G43210Wild cucumber (PI 183967)cpecpiB781
Cp4.1LG06g00950Lsi04G017230Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g00950MELO3C003771.2Melon (DHL92) v3.6.1cpemedB859
Cp4.1LG06g00950CsaV3_3G045650Cucumber (Chinese Long) v3cpecucB0966
Cp4.1LG06g00950Bhi09G001810Wax gourdcpewgoB0993
Cp4.1LG06g00950CsGy3G040780Cucumber (Gy14) v2cgybcpeB438
Cp4.1LG06g00950Carg17182Silver-seed gourdcarcpeB1310
Cp4.1LG06g00950Carg08691Silver-seed gourdcarcpeB0154
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g00950Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g00950Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g00950Melon (DHL92) v3.6.1cpemedB875
Cp4.1LG06g00950Silver-seed gourdcarcpeB0569
Cp4.1LG06g00950Silver-seed gourdcarcpeB1365
Cp4.1LG06g00950Cucumber (Chinese Long) v3cpecucB0960
Cp4.1LG06g00950Cucumber (Chinese Long) v3cpecucB0961
Cp4.1LG06g00950Cucumber (Chinese Long) v3cpecucB0984
Cp4.1LG06g00950Wax gourdcpewgoB0982
Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB100
Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB323
Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB423
Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g00950Cucurbita maxima (Rimu)cmacpeB198
Cp4.1LG06g00950Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g00950Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g00950Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g00950Wild cucumber (PI 183967)cpecpiB776
Cp4.1LG06g00950Cucumber (Chinese Long) v2cpecuB774
Cp4.1LG06g00950Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g00950Watermelon (97103) v1cpewmB756
Cp4.1LG06g00950Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g00950Cucumber (Gy14) v2cgybcpeB254