Cp4.1LG02g07980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g07980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial 39S ribosomal protein L53
LocationCp4.1LG02 : 436163 .. 438442 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGGAAGAAAAAGAAATACATTTTTAATTAATTTTTCTCAAGAAACTCTCCGTTTCGGTCGGTCTATAAAACCCAACTTACTCCCCTCCATAGGCTTCTTCTTGCACGCCCCAATCACTTTTGTTGGAAGGTTGAGGCGAAAGGAATAAGCCGCAATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGGTTCGTGCTTTTGTTCTCCCTTGCTGGGAAAATTTCTTTGTCCTCTTCTGCTTGAGTTTCATTTTGGTACTACATGTCGCATTTTGTCGAACAACTTATGTGCACCAAGAGTTTGATGGATTTTCTTTTTTAGAATGAAGTTTTTGCAACTATAAGAATTTATATTCATGTACTTACTTGTCTACTGAATTTCCTGTAAGAATTCCCAATGCTTCGCTTCTGCTTTTCAAGAGTTATGGATTTTGGCATTATTTTGTGAACCGCACTAGCATTTGAGAAGGACTTGAATTGATGATATGTTTTTGGCCCTTGTCTTATGCAGCGCGCTAGCGTTTTGGTATTCATTTGACTCGAATGTTTGCCCTAATTACCTTTGCGCTGGAACATACAGTGTTACAATATGTGTATTGATATGAACTACACTCTACTAGTAACTTATAGATGATTAGTATTCTCGTTTTACTGACTTTTCTGACCCATTGGAAAATCTCTCGTCTTTACGCACCTTGAGTTGTACAGTTAATCCAAGTTTTTCTCCTAGGCCTCACGTAGTAAGTTAATCTAAGTGATCCAAATCTGTGGGAATTGCTTCTTTTCTCTTTTTCCCTGATGATCTTCTGTATTAGGTGTTTGTCTAAAAGCTCCATTTGTTTTAACGGCTGTTATTTGTTTAAAGTGCTAATATATAGTCTTCCATCTGTGGCTCTGCTTCTGTCATAGTTTCAAGAGAATGTTTGTTGAATGAATCCGCAGAATTCACCCTTGAACCAATCAAGCACAAAGGCAAAAGAGGACAGTTAGTTAACCTTTTGCTATGGTGTTTTAGTTGGACAATAGCTATGAAAAGACAGATGGTCCATCTTTTCTTTAATATCGGGAGAAATACAATCGGGGCGGTGGGGTGGGGGGCTAATTCAAACCCTTCGGGTAAAATAAGAACATCCCCACATTCAAACAGCTCCTTTTTCCATTCGCAAGAACTTGTTTTAGTTGCATATCATAAGGAATTCGCAGTTTAAAAGGGTTTTTCGGCAACAAGGGAACTCAACAGATGTTCTACAACTTGATGTTGATTTGGTATTCCCATTCTGCAAAATCTCACTAAGTCACTAATTCTTACTTACAAAGCGAGCACATGTTGCAGATTTCTCTTGAAATCATTGAAATCTGCAATATACTCGTTTCTTATGCCTTTCTGGAAATGGTGGTAAGAAAGTTCAAAATGTTTGTCTTAGAGTTCAAATAAATCCAGAATGTGATTGTATGGTAAGCTTGTGCTTTTGGGCTATTTACAAGCTTTTAATTAGTTTCTCTCTGTATCATGTGTACTTTTACACACCCAAGTTGGGTGACAAATCTGTTTTCCTGAGCTTGTAAGTTGATCTTTTAGGTTCTTTCATTCGCATGTGTTCCTGCGTCTGAATTTCATGTAATCTTCTAACACTGTGCTTCCTGTTGCAGCCAAGAAAAGCGGAAGACAAGCAGTAACACTTTGTTTCAATTGATCAACTTACGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGTAGTAGTACATGTGCTGCTGTCTCTGAGATGTTTTCGTTCTAGATTTTTTCCTATGGATGTTTACTAGTCTTGTTTTCTCCTTCCGCACCAAGTTCTAAACATGGATGCTGTGTTGTTTTTTCATGAGCGAACTATTCATATAATAACTTGTTGCTAATACATGCTCTGTGACAAGTTTCCTGATACCCAA

mRNA sequence

GAGAGGAAGAAAAAGAAATACATTTTTAATTAATTTTTCTCAAGAAACTCTCCGTTTCGGTCGGTCTATAAAACCCAACTTACTCCCCTCCATAGGCTTCTTCTTGCACGCCCCAATCACTTTTGTTGGAAGGTTGAGGCGAAAGGAATAAGCCGCAATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGATTTCTCTTGAAATCATTGAAATCTGCAATATACTCGTTTCTTATGCCTTTCTGGAAATGGTGCTTTTAATTAGTTTCTCTCTGTATCATGTGTACTTTTACACACCCAAGTTGGGTGACAAATCTGTTTTCCTGAGCTTCCAAGAAAAGCGGAAGACAAGCAGTAACACTTTGTTTCAATTGATCAACTTACGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGTAGTAGTACATGTGCTGCTGTCTCTGAGATGTTTTCGTTCTAGATTTTTTCCTATGGATGTTTACTAGTCTTGTTTTCTCCTTCCGCACCAAGTTCTAAACATGGATGCTGTGTTGTTTTTTCATGAGCGAACTATTCATATAATAACTTGTTGCTAATACATGCTCTGTGACAAGTTTCCTGATACCCAA

Coding sequence (CDS)

ATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGATTTCTCTTGAAATCATTGAAATCTGCAATATACTCGTTTCTTATGCCTTTCTGGAAATGGTGCTTTTAATTAGTTTCTCTCTGTATCATGTGTACTTTTACACACCCAAGTTGGGTGACAAATCTGTTTTCCTGAGCTTCCAAGAAAAGCGGAAGACAAGCAGTAACACTTTGTTTCAATTGATCAACTTACGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGTAGTAGTACATGTGCTGCTGTCTCTGAGATGTTTTCGTTCTAG

Protein sequence

MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKISLEIIEICNILVSYAFLEMVLLISFSLYHVYFYTPKLGDKSVFLSFQEKRKTSSNTLFQLINLRMYLKEEGVHSVLAPSYQFPCSSTCAAVSEMFSF
Homology
[Close]
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match: A0A067KL23_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08242 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.6e-54
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKI 120
           VNGVEEVFD T  PAQTIRTMILEKGQLLETEQMFREAGE WPVIIP+EEL+ P P  K+
Sbjct: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKL 120

Query: 121 SL 123
            +
Sbjct: 121 KV 122

[Close]
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match: A0A0A0LGG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 108/119 (90.76%), Postives = 110/119 (92.44%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL  P   IK
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match: A0A0D2QL50_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.3e-53
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKI 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  K+
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

[Close]
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match: A0A0D2TTX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.3e-53
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  K
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match: A0A0B0NPC8_GOSAR (Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  K
Sbjct: 61  VNGVEESFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. TAIR10
Match: AT5G39600.1 (AT5G39600.1 Ribosomal protein L53, mitochondrial (InterPro:IPR019716))

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-51
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQITVTF
Sbjct: 1   MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE WPVIIPDEEL    P +K
Sbjct: 61  VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match: gi|643729014|gb|KDP36951.1| (hypothetical protein JCGZ_08242 [Jatropha curcas])

HSP 1 Score: 218.8 bits (556), Expect = 9.5e-54
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKI 120
           VNGVEEVFD T  PAQTIRTMILEKGQLLETEQMFREAGE WPVIIP+EEL+ P P  K+
Sbjct: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKL 120

Query: 121 SL 123
            +
Sbjct: 121 KV 122

[Close]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match: gi|802607508|ref|XP_012073843.1| (PREDICTED: uncharacterized protein LOC105635372 [Jatropha curcas])

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEEVFD T  PAQTIRTMILEKGQLLETEQMFREAGE WPVIIP+EEL+ P P  K
Sbjct: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match: gi|449460211|ref|XP_004147839.1| (PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.6e-53
Identity = 108/119 (90.76%), Postives = 110/119 (92.44%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL  P   IK
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIK 119

[Close]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match: gi|823230029|ref|XP_012447752.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii])

HSP 1 Score: 216.5 bits (550), Expect = 4.7e-53
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKI 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  K+
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

[Close]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match: gi|823230031|ref|XP_012447753.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIK 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  K
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTK 119

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g07980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g07980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067KL23_JATCU6.6e-5486.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08242 PE=4 SV=1[more]
A0A0A0LGG5_CUCSA2.5e-5390.76Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1[more]
A0A0D2QL50_GOSRA3.3e-5388.33Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A0D2TTX8_GOSRA7.3e-5389.08Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A0B0NPC8_GOSAR1.2e-5289.08Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE... [more]
BLAST of Cp4.1LG02g07980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39600.14.7e-5181.51 Ribosomal protein L53, mitochondrial (InterPro:IPR019716)[more]
BLAST of Cp4.1LG02g07980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|643729014|gb|KDP36951.1|9.5e-5486.89hypothetical protein JCGZ_08242 [Jatropha curcas][more]
gi|802607508|ref|XP_012073843.1|2.1e-5389.08PREDICTED: uncharacterized protein LOC105635372 [Jatropha curcas][more]
gi|449460211|ref|XP_004147839.1|3.6e-5390.76PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus][more]
gi|823230029|ref|XP_012447752.1|4.7e-5388.33PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii][more]
gi|823230031|ref|XP_012447753.1|1.0e-5289.08PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019716Ribosomal_L53_mit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g07980.1Cp4.1LG02g07980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019716Ribosomal protein L53, mitochondrialPFAMPF10780MRP_L53coord: 12..63
score: 6.4
NoneNo IPR availablePANTHERPTHR33618FAMILY NOT NAMEDcoord: 1..120
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g07980Cucsa.342840Cucumber (Gy14) v1cgycpeB0885
Cp4.1LG02g07980CmaCh09G001220Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g07980CmaCh01G019560Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g07980CmoCh01G020140Cucurbita moschata (Rifu)cmocpeB450
Cp4.1LG02g07980CmoCh09G001190Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g07980Cla020814Watermelon (97103) v1cpewmB559
Cp4.1LG02g07980Csa3G866470Cucumber (Chinese Long) v2cpecuB556
Cp4.1LG02g07980MELO3C003771Melon (DHL92) v3.5.1cpemeB516
Cp4.1LG02g07980ClCG05G018520Watermelon (Charleston Gray)cpewcgB509
Cp4.1LG02g07980CSPI03G43210Wild cucumber (PI 183967)cpecpiB558
Cp4.1LG02g07980Lsi04G017230Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g07980MELO3C003771.2Melon (DHL92) v3.6.1cpemedB614
Cp4.1LG02g07980CsaV3_3G045650Cucumber (Chinese Long) v3cpecucB0693
Cp4.1LG02g07980Bhi09G001810Wax gourdcpewgoB0716
Cp4.1LG02g07980CsGy3G040780Cucumber (Gy14) v2cgybcpeB387
Cp4.1LG02g07980Carg17182Silver-seed gourdcarcpeB1309
Cp4.1LG02g07980Carg08691Silver-seed gourdcarcpeB0153
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g07980Cp4.1LG06g00950Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g07980Wax gourdcpewgoB0694
Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB301
Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB415
Cp4.1LG02g07980Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g07980Cucumber (Gy14) v1cgycpeB0042
Cp4.1LG02g07980Cucumber (Gy14) v1cgycpeB0437
Cp4.1LG02g07980Cucurbita maxima (Rimu)cmacpeB190
Cp4.1LG02g07980Cucurbita maxima (Rimu)cmacpeB570
Cp4.1LG02g07980Cucurbita maxima (Rimu)cmacpeB678
Cp4.1LG02g07980Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g07980Cucurbita maxima (Rimu)cmacpeB882
Cp4.1LG02g07980Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g07980Cucurbita moschata (Rifu)cmocpeB521
Cp4.1LG02g07980Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g07980Cucurbita moschata (Rifu)cmocpeB819
Cp4.1LG02g07980Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g07980Wild cucumber (PI 183967)cpecpiB542
Cp4.1LG02g07980Wild cucumber (PI 183967)cpecpiB586
Cp4.1LG02g07980Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g07980Cucumber (Chinese Long) v2cpecuB540
Cp4.1LG02g07980Cucumber (Chinese Long) v2cpecuB585
Cp4.1LG02g07980Bottle gourd (USVL1VR-Ls)cpelsiB436
Cp4.1LG02g07980Bottle gourd (USVL1VR-Ls)cpelsiB439
Cp4.1LG02g07980Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g07980Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g07980Watermelon (97103) v1cpewmB541
Cp4.1LG02g07980Watermelon (97103) v1cpewmB577
Cp4.1LG02g07980Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g07980Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g07980Cucumber (Gy14) v2cgybcpeB226
Cp4.1LG02g07980Cucumber (Gy14) v2cgybcpeB823
Cp4.1LG02g07980Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g07980Melon (DHL92) v3.6.1cpemedB649
Cp4.1LG02g07980Silver-seed gourdcarcpeB0202
Cp4.1LG02g07980Silver-seed gourdcarcpeB1362
Cp4.1LG02g07980Cucumber (Chinese Long) v3cpecucB0676
Cp4.1LG02g07980Cucumber (Chinese Long) v3cpecucB0680
Cp4.1LG02g07980Cucumber (Chinese Long) v3cpecucB0724