Cla020814 (gene) Watermelon (97103) v1

NameCla020814
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR019716 Ribosomal protein L53, mitochondrial
LocationChr5 : 26547499 .. 26547975 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGTTTCTGTCTAAAGTGAAGATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATCGAATCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTCCTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAGCTCAATCAGCCATTTCCCAGTATCAAGGTTCGTGTTCTTCTTCTCCATTACTATGAACGTTTCTTGGTTCTCTTCTGCCGGAGTTTTCATTTTGGTACTGCCTGTGGCATTTCGTCGAACAATATATGTGCACTAAGAGTTTTATAA

mRNA sequence

ATGTTGAAGTTTCTGTCTAAAGTGAAGATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATCGAATCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTCCTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAGCTCAATCAGCCATTTCCCAGTATCAAGGTTCGTGTTCTTCTTCTCCATTACTATGAACGTTTCTTGGTTCTCTTCTGCCGGAGTTTTCATTTTGGTACTGCCTGTGGCATTTCGTCGAACAATATATGTGCACTAAGAGTTTTATAA

Coding sequence (CDS)

ATGTTGAAGTTTCTGTCTAAAGTGAAGATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATCGAATCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTCCTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAGCTCAATCAGCCATTTCCCAGTATCAAGGTTCGTGTTCTTCTTCTCCATTACTATGAACGTTTCTTGGTTCTCTTCTGCCGGAGTTTTCATTTTGGTACTGCCTGTGGCATTTCGTCGAACAATATATGTGCACTAAGAGTTTTATAA

Protein sequence

MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKVRVLLLHYYERFLVLFCRSFHFGTACGISSNNICALRVL
BLAST of Cla020814 vs. TrEMBL
Match: A0A0A0LGG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 112/121 (92.56%), Postives = 114/121 (94.21%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEEVFDATSTPAQTIR+MILEKG+LLETEQMFREAGE WPVIIPDEEL QPF  IK 
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

BLAST of Cla020814 vs. TrEMBL
Match: A0A061FKE0_THECC (Mitochondrial OS=Theobroma cacao GN=TCM_034190 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.4e-55
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQ+ VKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVQVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEEVF+ATSTPAQTIRNMILEKG+LLETEQMFREAGE WPVIIP+EEL+Q FP  KV
Sbjct: 61  VNGVEEVFNATSTPAQTIRNMILEKGQLLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

BLAST of Cla020814 vs. TrEMBL
Match: A0A0D2QL50_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-54
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEE FDATSTPAQTIR MILEKG++LETEQMFREAGE WPVIIP+EEL+Q FP  KV
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

Query: 121 RVL 124
             L
Sbjct: 121 WAL 123

BLAST of Cla020814 vs. TrEMBL
Match: A0A0D2TTX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEE FDATSTPAQTIR MILEKG++LETEQMFREAGE WPVIIP+EEL+Q FP  K 
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

BLAST of Cla020814 vs. TrEMBL
Match: A0A0B0NPC8_GOSAR (Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.3e-54
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEE FDATSTPAQTIR MILEKG++LETEQMFREAGE WPVIIP+EEL+Q FP  K 
Sbjct: 61  VNGVEESFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

BLAST of Cla020814 vs. NCBI nr
Match: gi|449460211|ref|XP_004147839.1| (PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-56
Identity = 112/121 (92.56%), Postives = 114/121 (94.21%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEEVFDATSTPAQTIR+MILEKG+LLETEQMFREAGE WPVIIPDEEL QPF  IK 
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

BLAST of Cla020814 vs. NCBI nr
Match: gi|590594047|ref|XP_007017744.1| (Mitochondrial [Theobroma cacao])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQ+ VKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVQVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEEVF+ATSTPAQTIRNMILEKG+LLETEQMFREAGE WPVIIP+EEL+Q FP  KV
Sbjct: 61  VNGVEEVFNATSTPAQTIRNMILEKGQLLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

BLAST of Cla020814 vs. NCBI nr
Match: gi|823230029|ref|XP_012447752.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii])

HSP 1 Score: 219.9 bits (559), Expect = 3.1e-54
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEE FDATSTPAQTIR MILEKG++LETEQMFREAGE WPVIIP+EEL+Q FP  KV
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKV 120

Query: 121 RVL 124
             L
Sbjct: 121 WAL 123

BLAST of Cla020814 vs. NCBI nr
Match: gi|659133011|ref|XP_008466507.1| (PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 5.3e-54
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPRLA CMEFLAQCNA K+KESNPACQLIVKRRTDDHPPQIAVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNATKSKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEEVFDATS  AQTIRNMILEKG+LLETEQMFREAGE WPVIIP+EEL QP  SIK 
Sbjct: 61  VNGVEEVFDATSISAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEEELKQPLTSIKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

BLAST of Cla020814 vs. NCBI nr
Match: gi|823230031|ref|XP_012447753.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 5.3e-54
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 1

Query: 1   MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTF 60
           MLKFLSKVKIEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIKV 120
           VNGVEE FDATSTPAQTIR MILEKG++LETEQMFREAGE WPVIIP+EEL+Q FP  K 
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LGG5_CUCSA3.0e-5692.56Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1[more]
A0A061FKE0_THECC7.4e-5590.00Mitochondrial OS=Theobroma cacao GN=TCM_034190 PE=4 SV=1[more]
A0A0D2QL50_GOSRA2.2e-5487.80Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A0D2TTX8_GOSRA3.7e-5488.43Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A0B0NPC8_GOSAR6.3e-5488.43Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE... [more]
Match NameE-valueIdentityDescription
gi|449460211|ref|XP_004147839.1|4.3e-5692.56PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus][more]
gi|590594047|ref|XP_007017744.1|1.1e-5490.00Mitochondrial [Theobroma cacao][more]
gi|823230029|ref|XP_012447752.1|3.1e-5487.80PREDICTED: uncharacterized protein LOC105770926 isoform X1 [Gossypium raimondii][more]
gi|659133011|ref|XP_008466507.1|5.3e-5490.08PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo][more]
gi|823230031|ref|XP_012447753.1|5.3e-5488.43PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019716Ribosomal_L53_mit
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU13269watermelon EST collection version 2.0transcribed_cluster
WMU36266watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU46159watermelon EST collection version 2.0transcribed_cluster
WMU59020watermelon EST collection version 2.0transcribed_cluster
WMU61299watermelon EST collection version 2.0transcribed_cluster
WMU74369watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020814Cla020814.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU74369WMU74369transcribed_cluster
WMU36266WMU36266transcribed_cluster
WMU13269WMU13269transcribed_cluster
WMU46159WMU46159transcribed_cluster
WMU59020WMU59020transcribed_cluster
WMU61299WMU61299transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019716Ribosomal protein L53, mitochondrialPFAMPF10780MRP_L53coord: 12..63
score: 8.4
NoneNo IPR availablePANTHERPTHR33618FAMILY NOT NAMEDcoord: 1..120
score: 2.5
NoneNo IPR availablePANTHERPTHR33618:SF139S RIBOSOMAL PROTEIN L53, MITOCHONDRIALcoord: 1..120
score: 2.5

The following gene(s) are paralogous to this gene:

None