CmoCh01G020140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G020140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitochondrial 39S ribosomal protein L53
LocationCmo_Chr01 : 14179955 .. 14182363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATTACATTTTCAATTAATTTTTCTCAAGAAACTCTCCGTTTCGGTCATAAACCCCCCCAAACTTACTCCCCTCCATAGGCTTCTTCTTGCACGCCCCAATCACTCTTGTTGGAAGGTTGAGGCGAAAGGAATAAGCCGCAATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGGAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTCTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGGTTCGTGCTTTTGTTCTCCCTTGCTGGGAAAATTTCTTTTTCCTCTTCTGCTTGAGTTTCATTTTGGTACTGTATGTGGCATTTTGTCGAACAACTTATGTGCACCAACAGTTTGATGGATTTTCTTTTTTTAGAATGAAGTTTGTGCAACTACAAACATTTATATTTACGATTTCATGTACTCACTTGTCTACTGAATTTCCTGGAAGAATACCCAATGCTTCGCTTCTGCTTTCAAGAGTTGTGGATTTTGGCATTATTTTGTGAACCGCACTAGCATTTGAGAAGGACTTAAATTGATGATATGTTTATTGGCACTTGTCTTATGCAGCGCGCTACCGTTTTGATATTCATTTGACTCGAATGTTTGCCCTAATTACCTTTGCGCTAGAACATACAGTGTTACAACATGTGTATTGATATGAACTACACTCTACTAGTAACTTATAGATGATTATTATTCTCGTTTTACTGACTTTTCTGACCCGTTGGAAAATCTCTCGTCTTTACGCACCTTGAGTTGTACAGTTAATCTAAGTTTTTCACCTAGGCCTCACGTAGTATGTTAATCTAAGTGGTCCAAATCTGTGGGAATTGCTTCTTTTCTCCTTTTCCCTGATGATCTTCTGTATTAGATGTTTGTCTAAAAACTCCATTTGTGTTAACGGCAACCATTTTCTTGTTATTGTTTGAAGTGCTAATATATAGTCTTCCAGCTGTGGCTCTGCTTCTGTCATAGTTTCAAGAGAATGTTTGTTGAATGAATCCGCATAATTCACCCTTGAACCAATCAAGCACAAAGGCAAAAGAGGACAGGTTATAACCTTTTGCTAGGGTGTTTTAGTGGGACAATAGCTCTGAAAAGATAGATGGTCCATCTTTTCTTTGATATTGGGAGAAATACAGGGGCTAATTCAAACCCTTCGAGTAAAATAAGAACATCCCCACCTTCAAACCGCCCCTTTTTCCATTCGCAAGAACTTGGTTGAGTTGCATATCATAAGAAATTCGAATAACTGCTTCAAATACAAATACAAAGGGTTTTTTTTGGCAACAAGTGAACTCAACAGATGTTCTACAACTTGATGTTGATTTGGTATTCCCATTCTGCAAAATCTCACCAAGTCACTAATTCTTACTTACAAAGCGAGCACATGTTGCAGATTTCTCTTGAAATCATTGAAATCTGCAATATATACTCGTTTCTTATGCCTTTCTGGAAATGGTGGTAAGAAAGTTCGAAATGTTTGTCTTAGAGTTCAAATAAATCCAGAATGTGATTGTATGGTAAGCTTGTACTTTTGGGCTATTATTGATAAGTTTTTAATTAGTTGCTCTCTGTATCATGTGTACTTTTACACACCCAAGTTGGATGACAAATCTGTTTTCCTGAGCTTGTAAGTTGATCTTTTAGGTTCTTTCATTCCCATGTGTTTCTGCATTTGAATTTCATGTAATCTTCTAACACTGTGTGCTTCCTGTTGCAGCCAAGAAAAGCGGAAGACAAGCAGTAACACTGTCTCAATTGATCAACTTGCGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGAAGTAGTAGTGCTGCTGGCTCTGAGATGTTTGTTCTAGGTTTTTTTCCTACGGATGTTTATTGTTTTCTCCTCCCGCACCAAGTTCTAAACATGGATGCTGTGTTGTTTTTCATCAGCTATTTATTCATATAATAACTTGTTGCTAGCTAATACATGCTTTGTGACAAGTTTCTTGATACCCAAATCAAAGCGCAAAGTCGACGAAAATTGAACAATGTTCACAGTAGGTGCCCGATTCTGGTACATCGAACACCAAGATGGATGAGTTTCCATGATTTTGAATGAATAGAAATGCAAGATTAAAATCTC

mRNA sequence

AGAATTACATTTTCAATTAATTTTTCTCAAGAAACTCTCCGTTTCGGTCATAAACCCCCCCAAACTTACTCCCCTCCATAGGCTTCTTCTTGCACGCCCCAATCACTCTTGTTGGAAGGTTGAGGCGAAAGGAATAAGCCGCAATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGGAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTCTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGCCAAGAAAAGCGGAAGACAAGCAGTAACACTGTCTCAATTGATCAACTTGCGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGAAGTAGTAGTGCTGCTGGCTCTGAGATGTTTGTTCTAGGTTTTTTTCCTACGGATGTTTATTGTTTTCTCCTCCCGCACCAAGTTCTAAACATGGATGCTGTGTTGTTTTTCATCAGCTATTTATTCATATAATAACTTGTTGCTAGCTAATACATGCTTTGTGACAAGTTTCTTGATACCCAAATCAAAGCGCAAAGTCGACGAAAATTGAACAATGTTCACAGTAGGTGCCCGATTCTGGTACATCGAACACCAAGATGGATGAGTTTCCATGATTTTGAATGAATAGAAATGCAAGATTAAAATCTC

Coding sequence (CDS)

ATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGGAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTCTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGCCAAGAAAAGCGGAAGACAAGCAGTAA
Homology
[Close]
BLAST of CmoCh01G020140 vs. TrEMBL
Match: A0A0A0LGG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-58
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL  P   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 RKAEDKQ 128
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]
BLAST of CmoCh01G020140 vs. TrEMBL
Match: A0A0D2TTX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-56
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. TrEMBL
Match: A0A0B0NPC8_GOSAR (Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-56
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEESFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. TrEMBL
Match: A9PC93_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23720g PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-55
Identity = 111/127 (87.40%), Postives = 118/127 (92.91%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL+VKRRTDD PPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRVASCMEFLAQCNARKAKESNPACQLLVKRRTDDFPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDATSTPAQ IRTMILEKGQLLETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEEAFDATSTPAQAIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHQFAPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. TrEMBL
Match: E0CPL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13890 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-55
Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR ASC+EFLAQCNARKAKESNPACQL+VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRTASCLEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEEVFDAT+TPAQ IR MILEKGQ LETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEEVFDATTTPAQAIRNMILEKGQHLETEQMFREAGEAWPVIIPEEELHQFAPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. TAIR10
Match: AT5G39600.1 (AT5G39600.1 Ribosomal protein L53, mitochondrial (InterPro:IPR019716))

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-55
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQITVTF
Sbjct: 1   MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE WPVIIPDEEL    P +KP
Sbjct: 61  VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVKP 120

Query: 121 RKAEDKQ 128
           RKAEDK+
Sbjct: 121 RKAEDKK 127

[Close]
BLAST of CmoCh01G020140 vs. NCBI nr
Match: gi|449460211|ref|XP_004147839.1| (PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTF
Sbjct: 1   MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE WPVIIPDEEL  P   IKP
Sbjct: 61  VNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEELKQPFTGIKP 120

Query: 121 RKAEDKQ 128
           RKAEDKQ
Sbjct: 121 RKAEDKQ 127

[Close]
BLAST of CmoCh01G020140 vs. NCBI nr
Match: gi|802607508|ref|XP_012073843.1| (PREDICTED: uncharacterized protein LOC105635372 [Jatropha curcas])

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFNALDPR+ASCMEFLAQCNARKAKESNPACQ++VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEEVFD T  PAQTIRTMILEKGQLLETEQMFREAGE WPVIIP+EEL+ P P  KP
Sbjct: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. NCBI nr
Match: gi|823230031|ref|XP_012447753.1| (PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEEAFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. NCBI nr
Match: gi|728836935|gb|KHG16378.1| (putative 39S ribosomal L53, mitochondrial [Gossypium arboreum])

HSP 1 Score: 225.7 bits (574), Expect = 4.5e-56
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR+ASCMEFLAQCNARKAKESNPACQL VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRIASCMEFLAQCNARKAKESNPACQLQVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEE FDATSTPAQTIRTMILEKGQ+LETEQMFREAGE WPVIIP+EEL+   P  KP
Sbjct: 61  VNGVEESFDATSTPAQTIRTMILEKGQMLETEQMFREAGEKWPVIIPEEELHQSFPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

[Close]
BLAST of CmoCh01G020140 vs. NCBI nr
Match: gi|720096325|ref|XP_010246949.1| (PREDICTED: uncharacterized protein LOC104590110 [Nelumbo nucifera])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 111/127 (87.40%), Postives = 118/127 (92.91%), Query Frame = 1 

Query: 1   MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR A+CMEFLAQCNARKAKESNPACQL+VKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRTAACMEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEELNHPPPSIKP 120
           VNGVEEVFDATST AQ+IRTMILEKGQLLETEQMFREAGE WPVIIP+EEL    P  KP
Sbjct: 61  VNGVEEVFDATSTAAQSIRTMILEKGQLLETEQMFREAGEAWPVIIPEEELRQHAPGTKP 120

Query: 121 RKAEDKQ 128
           RKAE+K+
Sbjct: 121 RKAEEKK 127

The following BLAST results are available for this feature:
BLAST of CmoCh01G020140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G020140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGG5_CUCSA7.5e-5891.34Uncharacterized protein OS=Cucumis sativus GN=Csa_3G866470 PE=4 SV=1[more]
A0A0D2TTX8_GOSRA1.8e-5688.19Uncharacterized protein OS=Gossypium raimondii GN=B456_009G225000 PE=4 SV=1[more]
A0A0B0NPC8_GOSAR3.2e-5688.19Putative 39S ribosomal L53, mitochondrial OS=Gossypium arboreum GN=F383_22806 PE... [more]
A9PC93_POPTR1.6e-5587.40Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23720g PE=2 SV=1[more]
E0CPL1_VITVI3.5e-5586.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13890 PE=4 SV=... [more]
BLAST of CmoCh01G020140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39600.14.1e-5581.89 Ribosomal protein L53, mitochondrial (InterPro:IPR019716)[more]
BLAST of CmoCh01G020140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460211|ref|XP_004147839.1|1.1e-5791.34PREDICTED: uncharacterized protein LOC101217531 [Cucumis sativus][more]
gi|802607508|ref|XP_012073843.1|5.3e-5788.19PREDICTED: uncharacterized protein LOC105635372 [Jatropha curcas][more]
gi|823230031|ref|XP_012447753.1|2.7e-5688.19PREDICTED: uncharacterized protein LOC105770926 isoform X2 [Gossypium raimondii][more]
gi|728836935|gb|KHG16378.1|4.5e-5688.19putative 39S ribosomal L53, mitochondrial [Gossypium arboreum][more]
gi|720096325|ref|XP_010246949.1|1.0e-5587.40PREDICTED: uncharacterized protein LOC104590110 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR019716Ribosomal_L53_mit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G020140.1CmoCh01G020140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 6..80
score: 3.
IPR019716Ribosomal protein L53, mitochondrialPFAMPF10780MRP_L53coord: 12..63
score: 2.2
NoneNo IPR availablePANTHERPTHR33618FAMILY NOT NAMEDcoord: 1..120
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G020140Cucsa.342840Cucumber (Gy14) v1cgycmoB0934
CmoCh01G020140CmaCh09G001220Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G020140CmaCh01G019560Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G020140Cla020814Watermelon (97103) v1cmowmB434
CmoCh01G020140Csa3G866470Cucumber (Chinese Long) v2cmocuB431
CmoCh01G020140MELO3C003771Melon (DHL92) v3.5.1cmomeB414
CmoCh01G020140ClCG05G018520Watermelon (Charleston Gray)cmowcgB412
CmoCh01G020140CSPI03G43210Wild cucumber (PI 183967)cmocpiB435
CmoCh01G020140Lsi04G017230Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G020140Cp4.1LG02g07980Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G020140Cp4.1LG06g00950Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G020140MELO3C003771.2Melon (DHL92) v3.6.1cmomedB474
CmoCh01G020140CsaV3_3G045650Cucumber (Chinese Long) v3cmocucB0521
CmoCh01G020140Cla97C05G099860Watermelon (97103) v2cmowmbB461
CmoCh01G020140Bhi09G001810Wax gourdcmowgoB0619
CmoCh01G020140CsGy3G040780Cucumber (Gy14) v2cgybcmoB330
CmoCh01G020140Carg17182Silver-seed gourdcarcmoB1263
CmoCh01G020140Carg08691Silver-seed gourdcarcmoB0146
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G020140CmoCh09G001190Cucurbita moschata (Rifu)cmocmoB017
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G020140Silver-seed gourdcarcmoB0195
CmoCh01G020140Silver-seed gourdcarcmoB1314
CmoCh01G020140Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G020140Cucumber (Chinese Long) v3cmocucB0513
CmoCh01G020140Cucumber (Chinese Long) v3cmocucB0567
CmoCh01G020140Watermelon (97103) v2cmowmbB420
CmoCh01G020140Watermelon (97103) v2cmowmbB438
CmoCh01G020140Watermelon (97103) v2cmowmbB486
CmoCh01G020140Wax gourdcmowgoB0566
CmoCh01G020140Wax gourdcmowgoB0583
CmoCh01G020140Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G020140Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G020140Cucumber (Gy14) v1cgycmoB0454
CmoCh01G020140Cucurbita maxima (Rimu)cmacmoB183
CmoCh01G020140Cucurbita maxima (Rimu)cmacmoB647
CmoCh01G020140Cucurbita maxima (Rimu)cmacmoB780
CmoCh01G020140Cucurbita maxima (Rimu)cmacmoB852
CmoCh01G020140Wild cucumber (PI 183967)cmocpiB428
CmoCh01G020140Wild cucumber (PI 183967)cmocpiB429
CmoCh01G020140Cucumber (Chinese Long) v2cmocuB424
CmoCh01G020140Cucumber (Chinese Long) v2cmocuB426
CmoCh01G020140Melon (DHL92) v3.5.1cmomeB403
CmoCh01G020140Watermelon (Charleston Gray)cmowcgB435
CmoCh01G020140Watermelon (97103) v1cmowmB416
CmoCh01G020140Cucurbita pepo (Zucchini)cmocpeB419
CmoCh01G020140Cucurbita pepo (Zucchini)cmocpeB421
CmoCh01G020140Cucurbita pepo (Zucchini)cmocpeB474
CmoCh01G020140Bottle gourd (USVL1VR-Ls)cmolsiB393
CmoCh01G020140Bottle gourd (USVL1VR-Ls)cmolsiB442
CmoCh01G020140Cucumber (Gy14) v2cgybcmoB193
CmoCh01G020140Cucumber (Gy14) v2cgybcmoB194
CmoCh01G020140Cucumber (Gy14) v2cgybcmoB754
CmoCh01G020140Melon (DHL92) v3.6.1cmomedB461
CmoCh01G020140Melon (DHL92) v3.6.1cmomedB506