Cp4.1LG05g13950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g13950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNuclear transcription factor Y protein
LocationCp4.1LG05 : 9768058 .. 9768681 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGTTTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

mRNA sequence

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGTTTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

Coding sequence (CDS)

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGTTTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR
Homology
[Close]
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.3e-54
Identity = 121/150 (80.67%), Postives = 132/150 (88.00%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGG--GPGGSGANVGGGGV 149
            G +G+K+GGGGGG  G G  GA + GGG+
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGGM 148

[Close]
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-41
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK 118
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 124/210 (59.05%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGM-YGGMMMMG 180
           ++    G G    GG  G                G GGG  GGG    GGM Y       
Sbjct: 121 RT----GLGRPQTGGEVGEHQRDAV---------GDGGGFYGGG----GGMQYHQHHQFL 180

Query: 181 HHQGGVYGSGGFHHMGIGGGKGGNGGSGTG 206
           H Q  +YG+        GGG    GG+ +G
Sbjct: 181 HQQNHMYGA-------TGGGSDSGGGAASG 186

[Close]
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-39
Identity = 91/142 (64.08%), Postives = 107/142 (75.35%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGGGKGEKDGGGGGGGP 137
           G+  T G GKG +      G P
Sbjct: 121 GD--TKGSGKGGESSAKRDGQP 140

[Close]
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 8.2e-39
Identity = 89/137 (64.96%), Postives = 104/137 (75.91%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    +    S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 G--GGKGEKDGGGGGGG 136
           G  G    +D GGG  G
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

[Close]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match: A0A0A0KFU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112490 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.0e-80
Identity = 184/209 (88.04%), Postives = 190/209 (90.91%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNP-GTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           G  +GEKDGGGGG  PGGSG     GGVN  G   G +GGG+NGVGGMYGG+MMMGHHQG
Sbjct: 121 GR-QGEKDGGGGG--PGGSG-----GGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQG 180

Query: 181 GVYGSGGFHHMGIGGGKGGNGG-SGTGHR 208
           GVYG  GFHHMGIG GKGG+GG SGTGHR
Sbjct: 181 GVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match: A0A0H3XSM1_VERFO (Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.3e-72
Identity = 170/202 (84.16%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGG 180
            G  GEKDG GG GG GG+ A  GG G    + GG  GGGFNG GGMYGGMMMMGHHQG 
Sbjct: 121 -GRPGEKDGAGGSGG-GGAAAGGGGSGGGVSSDGGGGGGGFNGGGGMYGGMMMMGHHQGH 180

Query: 181 VYGSGGFHHMGIGGGKGGNGGS 203
           +YGSGGFHH  +G GKGG+G S
Sbjct: 181 MYGSGGFHHQ-MGIGKGGSGNS 199

[Close]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match: A0A067K1C4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18501 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 169/204 (82.84%), Postives = 179/204 (87.75%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDG-GGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVG-GMYGGMMMMGHHQ 180
            G +GEKDG GG GGG   +G    GGGV+   GGG  GGGFNG G GMYGGMMMMGHHQ
Sbjct: 121 -GRQGEKDGAGGSGGGGAAAGGGGSGGGVSSSAGGGAGGGGFNGGGQGMYGGMMMMGHHQ 180

Query: 181 GGVYGSGGFHHMGIGGGKGGNGGS 203
           G +YGSGG+H   +G GKGG+G S
Sbjct: 181 GHMYGSGGYHQQ-MGIGKGGSGNS 202

[Close]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match: F6HHP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01010 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.0e-69
Identity = 167/206 (81.07%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 1   MADSDNESGGH-NSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGH NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSS 120

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           +GG  GEKDG GGGG   G     GGG ++ G     S GGFNG GGMYGGMMMMGHHQG
Sbjct: 121 LGGRPGEKDGSGGGGAAAG-----GGGAMSSG-----SSGGFNG-GGMYGGMMMMGHHQG 180

Query: 181 GVYGSGGFHHMGIGGGKGGNGGSGTG 206
             YGSG FHHM    G GG GG G G
Sbjct: 181 QAYGSGSFHHMS-SSGSGGGGGGGVG 194

[Close]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match: A5B7N5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012918 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.0e-69
Identity = 167/206 (81.07%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 1   MADSDNESGGH-NSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGH NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 249 MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 308

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+
Sbjct: 309 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSS 368

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           +GG  GEKDG GGGG   G     GGG ++ G     S GGFNG GGMYGGMMMMGHHQG
Sbjct: 369 LGGRPGEKDGSGGGGAAAG-----GGGAMSSG-----SSGGFNG-GGMYGGMMMMGHHQG 428

Query: 181 GVYGSGGFHHMGIGGGKGGNGGSGTG 206
             YGSG FHHM    G GG GG G G
Sbjct: 429 QAYGSGSFHHMS-SSGSGGGGGGGVG 442

[Close]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-55
Identity = 121/150 (80.67%), Postives = 132/150 (88.00%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGG--GPGGSGANVGGGGV 149
            G +G+K+GGGGGG  G G  GA + GGG+
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGGM 148

[Close]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 168.3 bits (425), Expect = 4.9e-42
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK 118
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 167.9 bits (424), Expect = 6.4e-42
Identity = 124/210 (59.05%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGM-YGGMMMMG 180
           ++    G G    GG  G                G GGG  GGG    GGM Y       
Sbjct: 121 RT----GLGRPQTGGEVGEHQRDAV---------GDGGGFYGGG----GGMQYHQHHQFL 180

Query: 181 HHQGGVYGSGGFHHMGIGGGKGGNGGSGTG 206
           H Q  +YG+        GGG    GG+ +G
Sbjct: 181 HQQNHMYGA-------TGGGSDSGGGAASG 186

[Close]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-40
Identity = 91/142 (64.08%), Postives = 107/142 (75.35%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGGGKGEKDGGGGGGGP 137
           G+  T G GKG +      G P
Sbjct: 121 GD--TKGSGKGGESSAKRDGQP 140

[Close]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 154.1 bits (388), Expect = 9.6e-38
Identity = 74/109 (67.89%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 19  LSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 78
           +  KEQDR LPIANV RIMK  LPANAK+SK+AKET+QECVSEFISF+TGEASDKC +EK
Sbjct: 47  MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEK 106

Query: 79  RKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEK 128
           RKT+NGDD+ WAM  LGF++Y   LK YL +YR +EGEK    G  G K
Sbjct: 107 RKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPK 155

[Close]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match: gi|659128334|ref|XP_008464158.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo])

HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82
Identity = 185/208 (88.94%), Postives = 191/208 (91.83%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNP-GTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           G  +GEKDGGGGG  PGGSG     GGVN  GT  G +GGG+NGVGGMYGG+MMMGHHQG
Sbjct: 121 GR-QGEKDGGGGG--PGGSG-----GGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQG 180

Query: 181 GVYGSGGFHHMGIGGGKGGNGGSGTGHR 208
           GVYG  GFHHMGIGGGKGG+G SGTGHR
Sbjct: 181 GVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match: gi|449444474|ref|XP_004139999.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.5e-80
Identity = 184/209 (88.04%), Postives = 190/209 (90.91%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNP-GTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           G  +GEKDGGGGG  PGGSG     GGVN  G   G +GGG+NGVGGMYGG+MMMGHHQG
Sbjct: 121 GR-QGEKDGGGGG--PGGSG-----GGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQG 180

Query: 181 GVYGSGGFHHMGIGGGKGGNGG-SGTGHR 208
           GVYG  GFHHMGIG GKGG+GG SGTGHR
Sbjct: 181 GVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match: gi|837378456|gb|AKM95037.1| (nuclear transcription factor Y subunit B-11 [Vernicia fordii])

HSP 1 Score: 280.0 bits (715), Expect = 3.3e-72
Identity = 170/202 (84.16%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGG 180
            G  GEKDG GG GG GG+ A  GG G    + GG  GGGFNG GGMYGGMMMMGHHQG 
Sbjct: 121 -GRPGEKDGAGGSGG-GGAAAGGGGSGGGVSSDGGGGGGGFNGGGGMYGGMMMMGHHQGH 180

Query: 181 VYGSGGFHHMGIGGGKGGNGGS 203
           +YGSGGFHH  +G GKGG+G S
Sbjct: 181 MYGSGGFHHQ-MGIGKGGSGNS 199

[Close]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match: gi|802669922|ref|XP_012081482.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas])

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-71
Identity = 169/204 (82.84%), Postives = 179/204 (87.75%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDG-GGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVG-GMYGGMMMMGHHQ 180
            G +GEKDG GG GGG   +G    GGGV+   GGG  GGGFNG G GMYGGMMMMGHHQ
Sbjct: 121 -GRQGEKDGAGGSGGGGAAAGGGGSGGGVSSSAGGGAGGGGFNGGGQGMYGGMMMMGHHQ 180

Query: 181 GGVYGSGGFHHMGIGGGKGGNGGS 203
           G +YGSGG+H   +G GKGG+G S
Sbjct: 181 GHMYGSGGYHQQ-MGIGKGGSGNS 202

[Close]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match: gi|147798735|emb|CAN61076.1| (hypothetical protein VITISV_012918 [Vitis vinifera])

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 167/206 (81.07%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 1   MADSDNESGGH-NSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGH NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 249 MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 308

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+
Sbjct: 309 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSS 368

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQG 180
           +GG  GEKDG GGGG   G     GGG ++ G     S GGFNG GGMYGGMMMMGHHQG
Sbjct: 369 LGGRPGEKDGSGGGGAAAG-----GGGAMSSG-----SSGGFNG-GGMYGGMMMMGHHQG 428

Query: 181 GVYGSGGFHHMGIGGGKGGNGGSGTG 206
             YGSG FHHM    G GG GG G G
Sbjct: 429 QAYGSGSFHHMS-SSGSGGGGGGGVG 442

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB3_ARATH5.3e-5480.67Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB7_ARATH8.7e-4173.50Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2... [more]
NFYB2_ARATH1.1e-4059.05Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYBA_ARATH2.8e-3964.08Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE... [more]
NFYB1_ARATH8.2e-3964.96Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
BLAST of Cp4.1LG05g13950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFU2_CUCSA1.0e-8088.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112490 PE=4 SV=1[more]
A0A0H3XSM1_VERFO2.3e-7284.16Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii PE=2 SV=1[more]
A0A067K1C4_JATCU2.5e-7182.84Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18501 PE=4 SV=1[more]
F6HHP9_VITVI9.0e-6981.07Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01010 PE=4 SV=... [more]
A5B7N5_VITVI9.0e-6981.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012918 PE=4 SV=1[more]
BLAST of Cp4.1LG05g13950 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.13.0e-5580.67 nuclear factor Y, subunit B3[more]
AT2G13570.14.9e-4273.50 nuclear factor Y, subunit B7[more]
AT5G47640.16.4e-4259.05 nuclear factor Y, subunit B2[more]
AT3G53340.11.6e-4064.08 nuclear factor Y, subunit B10[more]
AT2G47810.19.6e-3867.89 nuclear factor Y, subunit B5[more]
BLAST of Cp4.1LG05g13950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128334|ref|XP_008464158.1|1.6e-8288.94PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo][more]
gi|449444474|ref|XP_004139999.1|1.5e-8088.04PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus][more]
gi|837378456|gb|AKM95037.1|3.3e-7284.16nuclear transcription factor Y subunit B-11 [Vernicia fordii][more]
gi|802669922|ref|XP_012081482.1|3.6e-7182.84PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas][more]
gi|147798735|emb|CAN61076.1|1.3e-6881.07hypothetical protein VITISV_012918 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13950.1Cp4.1LG05g13950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 58..74
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 27..91
score: 6.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 17..127
score: 1.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 24..128
score: 4.5
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 93..111
score: 8.7E-22coord: 74..92
score: 8.7E-22coord: 55..73
score: 8.7
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..205
score: 3.5E
NoneNo IPR availablePANTHERPTHR11064:SF27NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATEDcoord: 1..205
score: 3.5E