Csa6G112490 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G112490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNuclear transcription factor Y subunit B-3; contains IPR003957 (Transcription factor, CBFA/NFYB, DNA topoisomerase), IPR009072 (Histone-fold)
LocationChr6 : 7775649 .. 7777337 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAATCAAAAACGTGTCGCTCCCGATTGCATTATTAGCCCAAACGACTCGACGGACTCTAACAACTCCCCTTCTGCTCCCCCTCACCTGTTTTCTTGGAGTCTTTCTTCTCCGGCGGCAACTTTCCGTTTCTCTTTATATTCAGATTTCCAATTCCGGCCTTCCGGCATCCTTAAGAATTCCGGTCATTCCTTGATCAACAAACACTACTCTCCAAATATCATTCATCATCTCTCTATTAACTAATTTCATTTTCTTCTTGCAGGATAATCGGCCCCCCTTTTCCGTTTCGCGTCGCCGGCGCTGGAAAATTGTACCTCGTGTCTTTCTATTATCTGATTCTTTTTTCATCTCATGACCGTGTTTTCTTTCTCTTCTTCTTTTTAATTCCAATGAGTTTCTGATAGGCGTAGAATAACATCGCTGATGATAATCTCTTGTTTTGGGATACGATTCTGGAATCGAAGTTTAGCGTTTTAGCTCAATAGAGTTTCGCAATTCGATTTTTCTTCTTTCTCGTTTCTTATATGTTCTTTGAGAGAAGGAATCGTTCCGGTCAATTTTGATAGTGAAAAGTGGAAAGGATTCGGTCTGTATTCTTTCCGTAACTAAAATTGATAGTTAAAGTAAGTGTTGTGGATCGTTGTTATGAGAATGGATCGAGAGGAGAAAAGGTACGCATCGTAGTTCATAAGCTTTCGACAGCCCTAGGAGGAGAAATTGGTTGAGATTGTGAAATCGTTAGAGAGAGAGGGCGTTTAGAAATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAGTGGTGTGGGACTGCTGCAAGGCCAAGCTAAGTGGGCTATGTGCTAGTTGGAACCTTTTAAAGGTTCTCCAACTTTTGAGCATCATTGATGACATTTTAGGAAGTTAATAAGAATTTTTTTTCCTCTTTTTGGGTCATTGAAAGTTGTGGAAAACTACTTTGGGTCTTTGTCAAATTTCTCTATTTTTCCTTTTTTTTTTTCCTTGTATAAGTGTAATTTGTGTATCTTGTGTGTAAGAGGGATATATTGATAAATATGATGGCATTTGTACAATTGTAACCCCTAATTTTACACCAAACTACTTACTAATTGCTAAGAC

mRNA sequence

ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG

Coding sequence (CDS)

ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSGKGGSGGASGTGHR*
Homology
[Close]
BLAST of Csa6G112490 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-62
Identity = 129/172 (75.00%), Postives = 137/172 (79.65%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMM--MGH 170
            GRQG+K+GGGGG               GGAG G +G   MYGG M+  MGH
Sbjct: 121 AGRQGDKEGGGGG---------------GGAGSG-SGGAPMYGGGMVTTMGH 154

[Close]
BLAST of Csa6G112490 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 123/203 (60.59%), Postives = 137/203 (67.49%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGG--MYGGVMMMGHHQGGV 180
           ++ +GR             +GG V      A G GGG+ G GG   Y       H Q  +
Sbjct: 121 RTGLGRP-----------QTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHM 180

Query: 181 YGGAGFHHMGIGSGKGGSGGASG 198
           YG  G      G    G G ASG
Sbjct: 181 YGATG------GGSDSGGGAASG 186

[Close]
BLAST of Csa6G112490 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 9.4e-48
Identity = 104/171 (60.82%), Postives = 113/171 (66.08%), Query Frame = 1 

Query: 4   SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 63
           S    GG           +EQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFI
Sbjct: 19  SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 78

Query: 64  SFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQ 123
           SFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YLQKYREMEG+     + 
Sbjct: 79  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKA 138

Query: 124 GEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGV 175
           G+        G  GG  +SS A   G    YN   GM  G M   +H G V
Sbjct: 139 GDGSVKKDVLGSHGG--SSSSAQGMGQQAAYN--QGM--GYMQPQYHNGDV 183

[Close]
BLAST of Csa6G112490 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 103/157 (65.61%), Postives = 113/157 (71.97%), Query Frame = 1 

Query: 20  SAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKR 79
           S +EQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKR
Sbjct: 28  SVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 87

Query: 80  KTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGG 139
           KTINGDDLLWAM TLGFE+Y+EPLK YLQKYREMEG+         K   G     + G 
Sbjct: 88  KTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTA----KSSDGSIKKDALGH 147

Query: 140 VNSSGAAAGGAG--GGYNGVGGMYGGVMMMGHHQGGV 175
           V +S +AA G G  G YN   GM  G M   +H G +
Sbjct: 148 VGASSSAAEGMGQQGAYN--QGM--GYMQPQYHNGDI 176

[Close]
BLAST of Csa6G112490 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-45
Identity = 89/137 (64.96%), Postives = 104/137 (75.91%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    +    S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 GRQGE---KDGGGGGPG 135
           G+ G+   +D GGG  G
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

[Close]
BLAST of Csa6G112490 vs. TrEMBL
Match: A0A0D1XD28_9EURO (Uncharacterized protein OS=Exophiala sideris GN=PV11_01435 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 97/186 (52.15%), Postives = 116/186 (62.37%), Query Frame = 1 

Query: 5   DNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFIS 64
           D E  G       E   KEQDR+LPIANV+RIMK ALP NAKI+K+AKE +QECVSEFIS
Sbjct: 25  DREQEGAQGTGLGEFEVKEQDRWLPIANVARIMKTALPDNAKIAKEAKECMQECVSEFIS 84

Query: 65  FITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQG 124
           FIT EAS+KCQ+EKRKT+NG+D+L+AMT+LGFE Y E LK YL KYRE +  +     + 
Sbjct: 85  FITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYRETQSTRGENQNRP 144

Query: 125 EKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAG---FH 184
              GG GGP G G   N +G A+G AG   N    +  G+    H     YG  G     
Sbjct: 145 TSSGGYGGPVGGGNQGNPAGGASGYAGQSENANDILSQGLNASDHDATSAYGYPGAVPTG 204

Query: 185 HMGIGS 188
           H GI S
Sbjct: 205 HNGISS 210

[Close]
BLAST of Csa6G112490 vs. TrEMBL
Match: A0A0D2C0A9_9EURO (Uncharacterized protein OS=Exophiala spinifera GN=PV08_04195 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.0e-42
Identity = 88/147 (59.86%), Postives = 106/147 (72.11%), Query Frame = 1 

Query: 5   DNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFIS 64
           D E  G       E   KEQDR+LPIANV+RIMK+ALP NAKI+K+AKE +QECVSEFIS
Sbjct: 25  DREQEGQAGTGLGEFEVKEQDRWLPIANVARIMKQALPDNAKIAKEAKECMQECVSEFIS 84

Query: 65  FITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQG 124
           FIT EAS+KCQ+EKRKT+NG+D+L+AMT+LGFE Y E LK YL KYRE +  +     + 
Sbjct: 85  FITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYRETQSTRGENQARP 144

Query: 125 EKDGGGGGPGGSGGGVNSSGAAAGGAG 152
              GG GGP G  GGV  S +A+G AG
Sbjct: 145 TSSGGYGGPVGGSGGVQGSASASGAAG 171

[Close]
BLAST of Csa6G112490 vs. TrEMBL
Match: A0A094EQP0_9PEZI (Uncharacterized protein OS=Pseudogymnoascus sp. VKM F-103 GN=V499_00358 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 95/189 (50.26%), Postives = 116/189 (61.38%), Query Frame = 1 

Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           H S    E   KEQDR+LPIANV+RIMK ALP NAKI+K+AKE +QECVSEFISFIT EA
Sbjct: 31  HASGLGYEFEVKEQDRWLPIANVARIMKTALPENAKIAKEAKECMQECVSEFISFITSEA 90

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK--STMGRQGEKDG 130
           S+KC +EKRKT+NG+D+L+AMT+LGFE Y E LK YL KYRE +  +  S   R   +  
Sbjct: 91  SEKCHQEKRKTVNGEDILFAMTSLGFENYAEALKIYLAKYRETQSARGESQQNRPSSQGF 150

Query: 131 GGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSG 190
           G     GS  GVN++G       G  N +GG        G H    +G  G +  G+  G
Sbjct: 151 GSAAAVGSSAGVNAAGGTFNSTEGSNNILGGQQA---ESGEHDPSGFG--GLYSTGMQGG 210

Query: 191 KGGSGGASG 198
             GS G  G
Sbjct: 211 HNGSVGGDG 214

[Close]
BLAST of Csa6G112490 vs. TrEMBL
Match: A0A094H964_9PEZI (Uncharacterized protein OS=Pseudogymnoascus sp. VKM F-4519 (FW-2642) GN=V501_04481 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 95/189 (50.26%), Postives = 116/189 (61.38%), Query Frame = 1 

Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           H S    E   KEQDR+LPIANV+RIMK ALP NAKI+K+AKE +QECVSEFISFIT EA
Sbjct: 31  HASGLGYEFEVKEQDRWLPIANVARIMKTALPENAKIAKEAKECMQECVSEFISFITSEA 90

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK--STMGRQGEKDG 130
           S+KC +EKRKT+NG+D+L+AMT+LGFE Y E LK YL KYRE +  +  S   R   +  
Sbjct: 91  SEKCHQEKRKTVNGEDILFAMTSLGFENYAEALKIYLAKYRETQSARGESQQNRPSSQGF 150

Query: 131 GGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSG 190
           G     GS  GVN++G       G  N +GG        G H    +G  G +  G+  G
Sbjct: 151 GSAAAVGSSAGVNAAGGTFNSTEGSNNILGGQQA---ESGEHDPSGFG--GLYSTGMQGG 210

Query: 191 KGGSGGASG 198
             GS G  G
Sbjct: 211 HNGSVGGDG 214

[Close]
BLAST of Csa6G112490 vs. TrEMBL
Match: L8FZA3_PSED2 (Uncharacterized protein OS=Pseudogymnoascus destructans (strain ATCC MYA-4855 / 20631-21) GN=GMDG_01617 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 95/189 (50.26%), Postives = 116/189 (61.38%), Query Frame = 1 

Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           H S    E   KEQDR+LPIANV+RIMK ALP NAKI+K+AKE +QECVSEFISFIT EA
Sbjct: 31  HASGLGYEFEVKEQDRWLPIANVARIMKTALPENAKIAKEAKECMQECVSEFISFITSEA 90

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK--STMGRQGEKDG 130
           S+KC +EKRKT+NG+D+L+AMT+LGFE Y E LK YL KYRE +  +  S   R   +  
Sbjct: 91  SEKCHQEKRKTVNGEDILFAMTSLGFENYAEALKIYLAKYRETQSARGESQQNRPNSQGF 150

Query: 131 GGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSG 190
           G     GS  GVN++G       G  N +GG        G H    +G  G +  G+  G
Sbjct: 151 GSAAAVGSSAGVNAAGGTFNSTEGSNNILGGQQA---ESGEHDPSGFG--GLYSTGMQGG 210

Query: 191 KGGSGGASG 198
             GS G  G
Sbjct: 211 HNGSVGGDG 214

[Close]
BLAST of Csa6G112490 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-63
Identity = 129/172 (75.00%), Postives = 137/172 (79.65%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMM--MGH 170
            GRQG+K+GGGGG               GGAG G +G   MYGG M+  MGH
Sbjct: 121 AGRQGDKEGGGGG---------------GGAGSG-SGGAPMYGGGMVTTMGH 154

[Close]
BLAST of Csa6G112490 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 224.2 bits (570), Expect = 7.4e-59
Identity = 123/203 (60.59%), Postives = 137/203 (67.49%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGG--MYGGVMMMGHHQGGV 180
           ++ +GR             +GG V      A G GGG+ G GG   Y       H Q  +
Sbjct: 121 RTGLGRP-----------QTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHM 180

Query: 181 YGGAGFHHMGIGSGKGGSGGASG 198
           YG  G      G    G G ASG
Sbjct: 181 YGATG------GGSDSGGGAASG 186

[Close]
BLAST of Csa6G112490 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 180.6 bits (457), Expect = 9.4e-46
Identity = 88/138 (63.77%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGRQGEKDGGGGG 133
           G+    G+ GE      G
Sbjct: 121 GDTKGSGKGGESSAKRDG 138

[Close]
BLAST of Csa6G112490 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-45
Identity = 88/133 (66.17%), Postives = 100/133 (75.19%), Query Frame = 1 

Query: 6   NESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 65
           +ESGG  S  +  L  +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF
Sbjct: 15  HESGGDQSPRS--LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISF 74

Query: 66  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 125
           +T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YL +YREMEG+     + G+
Sbjct: 75  VTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGD 134

Query: 126 KDGGGGGPGGSGG 139
            +    G     G
Sbjct: 135 PNAKKDGQSSQNG 145

[Close]
BLAST of Csa6G112490 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-44
Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK   
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 134

Query: 121 GRQGEK 127
            +Q ++
Sbjct: 135 PKQQQQ 139

[Close]
BLAST of Csa6G112490 vs. NCBI nr
Match: gi|449444474|ref|XP_004139999.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 4.9e-113
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180
           GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF
Sbjct: 121 GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180

Query: 181 HHMGIGSGKGGSGGASGTGHR 202
           HHMGIGSGKGGSGGASGTGHR
Sbjct: 181 HHMGIGSGKGGSGGASGTGHR 201

[Close]
BLAST of Csa6G112490 vs. NCBI nr
Match: gi|568830326|ref|XP_006469452.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Citrus sinensis])

HSP 1 Score: 309.7 bits (792), Expect = 3.8e-81
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 1 

Query: 1   MADSDNESGG-HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGG +NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGQNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEK++
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTS 120

Query: 121 MGRQGEKDGGGGGPGGSGGGVNSSGAAA--GGAGGGYNGVGGMYGGVMMMGHHQGGVYGG 180
           MGR+ +  G GGG G +GGG  + G A+  GGAGGGYN  GGMYGG+MMMG HQG VYG 
Sbjct: 121 MGREKDGGGSGGGAGSAGGGAAAGGGASGGGGAGGGYN--GGMYGGMMMMG-HQGHVYGS 180

Query: 181 AGF---HHMGIGSGKGGSGGASGT 199
            GF   HH  +G+GK GS  AS +
Sbjct: 181 GGFHHHHHHQMGAGKSGSPAASAS 201

[Close]
BLAST of Csa6G112490 vs. NCBI nr
Match: gi|470139891|ref|XP_004305679.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 286.6 bits (732), Expect = 3.4e-74
Identity = 150/214 (70.09%), Postives = 167/214 (78.04%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS-ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGHN ++   ELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGHNGHSQGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-S 120
           SEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEK +
Sbjct: 61  SEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKGA 120

Query: 121 TMGRQG-EKDGGGG------GPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQ 180
            +G  G +KDGG G      G GG GGG +S G  + G  GG     G+YGG+ M+GHHQ
Sbjct: 121 AVGTAGRDKDGGSGGGGSAAGGGGGGGGGSSGGGLSSGTSGGGGAFNGVYGGMGMLGHHQ 180

Query: 181 GGVYGGAGF-HHMGIGSG---KGGSGGASGTGHR 202
           G VYG  G+ H MG+G G   + GSGG +    R
Sbjct: 181 GHVYGSGGYQHQMGVGVGAEKRSGSGGGASVRSR 214

[Close]
BLAST of Csa6G112490 vs. NCBI nr
Match: gi|595926960|ref|XP_007215055.1| (hypothetical protein PRUPE_ppa012163mg [Prunus persica])

HSP 1 Score: 209.1 bits (531), Expect = 7.0e-51
Identity = 119/208 (57.21%), Postives = 135/208 (64.90%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS---ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 60
           MADSDN+SGG+N  +++   ELSA+EQDRFLPIAN                        E
Sbjct: 1   MADSDNDSGGNNDGSHAQSRELSAREQDRFLPIAN------------------------E 60

Query: 61  CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK 120
           CVSEFISF+TGEASDKCQREKRKTIN DDLLWAMTTL FEEY+EPLK YL KYRE+EGEK
Sbjct: 61  CVSEFISFVTGEASDKCQREKRKTINSDDLLWAMTTLRFEEYMEPLKVYLHKYRELEGEK 120

Query: 121 STMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMG---HHQGGV 180
           + MG + +  GG G   GS GG           GGGYNGV   YGG++MMG   HHQG V
Sbjct: 121 TIMGGRDKDSGGDGVTSGSSGG-----------GGGYNGV---YGGMVMMGNHHHHQGHV 170

Query: 181 Y---GGAGFHHMGIGSGKGGSGGASGTG 200
           Y   GG   HHMGIGSG  G G +  +G
Sbjct: 181 YDSGGGYQQHHMGIGSGGVGVGNSGDSG 170

[Close]
BLAST of Csa6G112490 vs. NCBI nr
Match: gi|957833070|ref|XP_014666576.1| (PREDICTED: TATA-binding protein-associated factor 2N-like [Priapulus caudatus])

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 1 

Query: 121 GRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGF 180
           G  G   G GGG GG+GGG    G   GG GGGY G+GG YGG+       GG YGG G 
Sbjct: 121 GIGGGYGGIGGGYGGTGGGYGGIGGGYGGVGGGYGGIGGGYGGI-------GGGYGGIGG 180

Query: 181 HHMGIGSGKGGSGGASG 198
            + GIG G GG GG  G
Sbjct: 181 GYGGIGGGYGGIGGGYG 190

The following BLAST results are available for this feature:
BLAST of Csa6G112490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB3_ARATH1.8e-6275.00Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB2_ARATH1.3e-5760.59Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ORYSJ9.4e-4860.82Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB_MAIZE2.1e-4765.61Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB1_ARATH4.4e-4564.96Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
BLAST of Csa6G112490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D1XD28_9EURO3.2e-4252.15Uncharacterized protein OS=Exophiala sideris GN=PV11_01435 PE=4 SV=1[more]
A0A0D2C0A9_9EURO7.0e-4259.86Uncharacterized protein OS=Exophiala spinifera GN=PV08_04195 PE=4 SV=1[more]
A0A094EQP0_9PEZI1.3e-4050.26Uncharacterized protein OS=Pseudogymnoascus sp. VKM F-103 GN=V499_00358 PE=4 SV=... [more]
A0A094H964_9PEZI1.3e-4050.26Uncharacterized protein OS=Pseudogymnoascus sp. VKM F-4519 (FW-2642) GN=V501_044... [more]
L8FZA3_PSED21.3e-4050.26Uncharacterized protein OS=Pseudogymnoascus destructans (strain ATCC MYA-4855 / ... [more]
BLAST of Csa6G112490 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.11.0e-6375.00 nuclear factor Y, subunit B3[more]
AT5G47640.17.4e-5960.59 nuclear factor Y, subunit B2[more]
AT3G53340.19.4e-4663.77 nuclear factor Y, subunit B10[more]
AT2G37060.12.7e-4566.17 nuclear factor Y, subunit B8[more]
AT2G13570.12.3e-4469.05 nuclear factor Y, subunit B7[more]
BLAST of Csa6G112490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444474|ref|XP_004139999.1|4.9e-113100.00PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus][more]
gi|568830326|ref|XP_006469452.1|3.8e-8178.92PREDICTED: nuclear transcription factor Y subunit B-3 [Citrus sinensis][more]
gi|470139891|ref|XP_004305679.1|3.4e-7470.09PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp... [more]
gi|595926960|ref|XP_007215055.1|7.0e-5157.21hypothetical protein PRUPE_ppa012163mg [Prunus persica][more]
gi|957833070|ref|XP_014666576.1|1.6e-1050.65PREDICTED: TATA-binding protein-associated factor 2N-like [Priapulus caudatus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0016301 kinase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088379cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G112490.1Csa6G112490.1mRNA
Csa6G112490.2Csa6G112490.2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088379CU088379transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 58..74
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 27..91
score: 5.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 17..128
score: 6.6
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 24..126
score: 4.66
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 55..73
score: 9.5E-22coord: 93..111
score: 9.5E-22coord: 74..92
score: 9.5
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..196
score: 5.4E
NoneNo IPR availablePANTHERPTHR11064:SF27NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATEDcoord: 1..196
score: 5.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G112490MELO3C025951Melon (DHL92) v3.5.1cumeB448
Csa6G112490ClCG02G009200Watermelon (Charleston Gray)cuwcgB453
Csa6G112490Lsi10G000420Bottle gourd (USVL1VR-Ls)culsiB415
Csa6G112490MELO3C025951.2Melon (DHL92) v3.6.1cumedB405
Csa6G112490Cla97C02G035590Watermelon (97103) v2cuwmbB443
Csa6G112490CSPI06G09270Wild cucumber (PI 183967)cpicuB314
Csa6G112490Cucsa.120240Cucumber (Gy14) v1cgycuB155
Csa6G112490CmaCh02G002340Cucurbita maxima (Rimu)cmacuB618
Csa6G112490CmaCh20G006860Cucurbita maxima (Rimu)cmacuB555
Csa6G112490CmoCh02G002370Cucurbita moschata (Rifu)cmocuB611
Csa6G112490CmoCh20G006820Cucurbita moschata (Rifu)cmocuB546
Csa6G112490Cp4.1LG05g13950Cucurbita pepo (Zucchini)cpecuB754
Csa6G112490Cp4.1LG16g03860Cucurbita pepo (Zucchini)cpecuB292
Csa6G112490CsGy3G004280Cucumber (Gy14) v2cgybcuB148
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa6G112490Csa3G048940Cucumber (Chinese Long) v2cucuB126
The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G112490Melon (DHL92) v3.6.1cumedB442
Csa6G112490Silver-seed gourdcarcuB0227
Csa6G112490Silver-seed gourdcarcuB0378
Csa6G112490Silver-seed gourdcarcuB0823
Csa6G112490Silver-seed gourdcarcuB1079
Csa6G112490Watermelon (97103) v2cuwmbB432
Csa6G112490Wax gourdcuwgoB561
Csa6G112490Wax gourdcuwgoB608
Csa6G112490Cucumber (Chinese Long) v2cucuB171
Csa6G112490Cucumber (Gy14) v1cgycuB110
Csa6G112490Cucurbita maxima (Rimu)cmacuB141
Csa6G112490Cucurbita maxima (Rimu)cmacuB521
Csa6G112490Cucurbita moschata (Rifu)cmocuB130
Csa6G112490Cucurbita moschata (Rifu)cmocuB513
Csa6G112490Melon (DHL92) v3.5.1cumeB425
Csa6G112490Melon (DHL92) v3.5.1cumeB461
Csa6G112490Watermelon (Charleston Gray)cuwcgB443
Csa6G112490Watermelon (97103) v1cuwmB516
Csa6G112490Cucurbita pepo (Zucchini)cpecuB250
Csa6G112490Cucurbita pepo (Zucchini)cpecuB689
Csa6G112490Bottle gourd (USVL1VR-Ls)culsiB428
Csa6G112490Cucumber (Gy14) v2cgybcuB282
Csa6G112490Cucumber (Gy14) v2cgybcuB321