CmoCh02G002370 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G002370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(CCAAT-binding transcription factor subunit A, putative, expressed) (HAP3 subunit of HAP complex)
LocationCmo_Chr02 : 1117825 .. 1118457 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCGGATAACGAATCGGGAGGTCACAATAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCAAATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

mRNA sequence

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAATAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCAAATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG

Coding sequence (CDS)

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAATAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCAAATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG
Homology
[Close]
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.7e-53
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGGGPG-GSGANVGGGGG 149
            G +G+K+GGGGGGG G GSG     GGG
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGG 147

[Close]
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 124/213 (58.22%), Postives = 143/213 (67.14%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGM-YGGMM 180
           ++ +G  +              +G  VG      V  G GGG  GGG    GGM Y    
Sbjct: 121 RTGLGRPQ--------------TGGEVGEHQRDAV--GDGGGFYGGG----GGMQYHQHH 180

Query: 181 MMGHHQGGVYGSGGFHQMGIGGGKGGNGGSGTG 209
              H Q  +YG+        GGG    GG+ +G
Sbjct: 181 QFLHQQNHMYGA-------TGGGSDSGGGAASG 186

[Close]
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.9e-41
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK 118
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 96/144 (66.67%), Postives = 106/144 (73.61%), Query Frame = 1 

Query: 4   SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 63
           S    GG           +EQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFI
Sbjct: 19  SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 78

Query: 64  SFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK---STM 123
           SFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YLQKYREMEG+    +  
Sbjct: 79  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKA 138

Query: 124 GGGKGEKDGGGGGGGPGGSGANVG 145
           G G  +KD  G  GG   S   +G
Sbjct: 139 GDGSVKKDVLGSHGGSSSSAQGMG 162

[Close]
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-39
Identity = 91/142 (64.08%), Postives = 107/142 (75.35%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGGGKGEKDGGGGGGGP 137
           G+  T G GKG +      G P
Sbjct: 121 GD--TKGSGKGGESSAKRDGQP 140

[Close]
BLAST of CmoCh02G002370 vs. TrEMBL
Match: A0A0A0KFU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112490 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.1e-77
Identity = 179/211 (84.83%), Postives = 185/211 (87.68%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180
            G +GEKDGGGGG G  G G N  G   GG         +GGG+NGVGGMYGG+MMMGHH
Sbjct: 121 -GRQGEKDGGGGGPGGSGGGVNSSGAAAGG---------AGGGYNGVGGMYGGVMMMGHH 180

Query: 181 QGGVYGSGGFHQMGIGGGKGGNGG-SGTGHR 211
           QGGVYG  GFH MGIG GKGG+GG SGTGHR
Sbjct: 181 QGGVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]
BLAST of CmoCh02G002370 vs. TrEMBL
Match: A0A0H3XSM1_VERFO (Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.2e-72
Identity = 177/207 (85.51%), Postives = 183/207 (88.41%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGG-GGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180
           G   GEKDG    GG GG GA  GGGG GGGV+   GGG  GGGFNG GGMYGGMMMMGH
Sbjct: 121 GR-PGEKDGA---GGSGGGGAAAGGGGSGGGVSSDGGGG--GGGFNGGGGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGF-HQMGIGGGKGGNGGS 206
           HQG +YGSGGF HQMGI  GKGG+G S
Sbjct: 181 HQGHMYGSGGFHHQMGI--GKGGSGNS 199

[Close]
BLAST of CmoCh02G002370 vs. TrEMBL
Match: A0A067K1C4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18501 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.0e-71
Identity = 174/206 (84.47%), Postives = 184/206 (89.32%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVG-GMYGGMMMMGH 180
            G +GEKDG GG GG GG+ A  GGG GGGV+   GGG  GGGFNG G GMYGGMMMMGH
Sbjct: 121 -GRQGEKDGAGGSGG-GGAAAG-GGGSGGGVSSSAGGGAGGGGFNGGGQGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGFHQMGIGGGKGGNGGS 206
           HQG +YGSGG+HQ  +G GKGG+G S
Sbjct: 181 HQGHMYGSGGYHQQ-MGIGKGGSGNS 202

[Close]
BLAST of CmoCh02G002370 vs. TrEMBL
Match: F6HHP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01010 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.9e-67
Identity = 166/209 (79.43%), Postives = 172/209 (82.30%), Query Frame = 1 

Query: 1   MADSDNESGGH-NSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGH NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSS 120

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180
           +GG  GEKDG GGGG           GGGG ++ G     S GGFNG GGMYGGMMMMGH
Sbjct: 121 LGGRPGEKDGSGGGG--------AAAGGGGAMSSG-----SSGGFNG-GGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTG 209
           HQG  YGSG FH M    G GG GG G G
Sbjct: 181 HQGQAYGSGSFHHMS-SSGSGGGGGGGVG 194

[Close]
BLAST of CmoCh02G002370 vs. TrEMBL
Match: A5B7N5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012918 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.9e-67
Identity = 166/209 (79.43%), Postives = 172/209 (82.30%), Query Frame = 1 

Query: 1   MADSDNESGGH-NSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           MADSDN+SGGH NSNANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 249 MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 308

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+
Sbjct: 309 SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSS 368

Query: 121 MGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180
           +GG  GEKDG GGGG           GGGG ++ G     S GGFNG GGMYGGMMMMGH
Sbjct: 369 LGGRPGEKDGSGGGG--------AAAGGGGAMSSG-----SSGGFNG-GGMYGGMMMMGH 428

Query: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTG 209
           HQG  YGSG FH M    G GG GG G G
Sbjct: 429 HQGQAYGSGSFHHMS-SSGSGGGGGGGVG 442

[Close]
BLAST of CmoCh02G002370 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-54
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK+T 
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 GGGKGEKDGGGGGGGPG-GSGANVGGGGG 149
            G +G+K+GGGGGGG G GSG     GGG
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGG 147

[Close]
BLAST of CmoCh02G002370 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 124/213 (58.22%), Postives = 143/213 (67.14%), Query Frame = 1 

Query: 1   MADSDNESGG----HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SGG    +N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGM-YGGMM 180
           ++ +G  +              +G  VG      V  G GGG  GGG    GGM Y    
Sbjct: 121 RTGLGRPQ--------------TGGEVGEHQRDAV--GDGGGFYGGG----GGMQYHQHH 180

Query: 181 MMGHHQGGVYGSGGFHQMGIGGGKGGNGGSGTG 209
              H Q  +YG+        GGG    GG+ +G
Sbjct: 181 QFLHQQNHMYGA-------TGGGSDSGGGAASG 186

[Close]
BLAST of CmoCh02G002370 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-42
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEK 118
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of CmoCh02G002370 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-40
Identity = 91/142 (64.08%), Postives = 107/142 (75.35%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGGGKGEKDGGGGGGGP 137
           G+  T G GKG +      G P
Sbjct: 121 GD--TKGSGKGGESSAKRDGQP 140

[Close]
BLAST of CmoCh02G002370 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 154.1 bits (388), Expect = 9.8e-38
Identity = 74/109 (67.89%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 19  LSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 78
           +  KEQDR LPIANV RIMK  LPANAK+SK+AKET+QECVSEFISF+TGEASDKC +EK
Sbjct: 47  MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEK 106

Query: 79  RKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEK 128
           RKT+NGDD+ WAM  LGF++Y   LK YL +YR +EGEK    G  G K
Sbjct: 107 RKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPK 155

[Close]
BLAST of CmoCh02G002370 vs. NCBI nr
Match: gi|659128334|ref|XP_008464158.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 6.7e-81
Identity = 184/211 (87.20%), Postives = 190/211 (90.05%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNP-GTGGGVSGGGFNGVGGMYGGMMMMGH 180
           G  +GEKDGGGGG  PGGSG        GGVN  GT  G +GGG+NGVGGMYGG+MMMGH
Sbjct: 121 GR-QGEKDGGGGG--PGGSG--------GGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGH 180

Query: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 211
           HQGGVYG  GFH MGIGGGKGG+G SGTGHR
Sbjct: 181 HQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]
BLAST of CmoCh02G002370 vs. NCBI nr
Match: gi|449444474|ref|XP_004139999.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 5.9e-77
Identity = 179/211 (84.83%), Postives = 185/211 (87.68%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180
            G +GEKDGGGGG G  G G N  G   GG         +GGG+NGVGGMYGG+MMMGHH
Sbjct: 121 -GRQGEKDGGGGGPGGSGGGVNSSGAAAGG---------AGGGYNGVGGMYGGVMMMGHH 180

Query: 181 QGGVYGSGGFHQMGIGGGKGGNGG-SGTGHR 211
           QGGVYG  GFH MGIG GKGG+GG SGTGHR
Sbjct: 181 QGGVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]
BLAST of CmoCh02G002370 vs. NCBI nr
Match: gi|837378456|gb|AKM95037.1| (nuclear transcription factor Y subunit B-11 [Vernicia fordii])

HSP 1 Score: 278.9 bits (712), Expect = 7.4e-72
Identity = 177/207 (85.51%), Postives = 183/207 (88.41%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGG-GGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180
           G   GEKDG    GG GG GA  GGGG GGGV+   GGG  GGGFNG GGMYGGMMMMGH
Sbjct: 121 GR-PGEKDGA---GGSGGGGAAAGGGGSGGGVSSDGGGG--GGGFNGGGGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGF-HQMGIGGGKGGNGGS 206
           HQG +YGSGGF HQMGI  GKGG+G S
Sbjct: 181 HQGHMYGSGGFHHQMGI--GKGGSGNS 199

[Close]
BLAST of CmoCh02G002370 vs. NCBI nr
Match: gi|802669922|ref|XP_012081482.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas])

HSP 1 Score: 276.9 bits (707), Expect = 2.8e-71
Identity = 174/206 (84.47%), Postives = 184/206 (89.32%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVG-GMYGGMMMMGH 180
            G +GEKDG GG GG GG+ A  GGG GGGV+   GGG  GGGFNG G GMYGGMMMMGH
Sbjct: 121 -GRQGEKDGAGGSGG-GGAAAG-GGGSGGGVSSSAGGGAGGGGFNGGGQGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGFHQMGIGGGKGGNGGS 206
           HQG +YGSGG+HQ  +G GKGG+G S
Sbjct: 181 HQGHMYGSGGYHQQ-MGIGKGGSGNS 202

[Close]
BLAST of CmoCh02G002370 vs. NCBI nr
Match: gi|1009127675|ref|XP_015880819.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Ziziphus jujuba])

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-69
Identity = 166/206 (80.58%), Postives = 179/206 (86.89%), Query Frame = 1 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN++   E SA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNSG--EPSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK++M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYRELEGEKTSM 120

Query: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHH 180
            G  GEKDG GG GG GG+ +  GG GGG V+ G+G    G G+NGVGGMYGGMMMMGHH
Sbjct: 121 -GKPGEKDGSGGSGGGGGTASGGGGSGGGAVSSGSG----GVGYNGVGGMYGGMMMMGHH 180

Query: 181 QGGVYGSGGFHQMGIGGGKGGNGGSG 207
           QG VYGSGG+HQMGIGGG GG G  G
Sbjct: 181 QGQVYGSGGYHQMGIGGGGGGGGALG 199

The following BLAST results are available for this feature:
BLAST of CmoCh02G002370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB3_ARATH7.7e-5381.88Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB2_ARATH6.8e-4158.22Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB7_ARATH8.9e-4173.50Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2... [more]
NFYB3_ORYSJ3.7e-3966.67Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYBA_ARATH4.9e-3964.08Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE... [more]
BLAST of CmoCh02G002370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFU2_CUCSA4.1e-7784.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112490 PE=4 SV=1[more]
A0A0H3XSM1_VERFO5.2e-7285.51Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii PE=2 SV=1[more]
A0A067K1C4_JATCU2.0e-7184.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18501 PE=4 SV=1[more]
F6HHP9_VITVI2.9e-6779.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g01010 PE=4 SV=... [more]
A5B7N5_VITVI2.9e-6779.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012918 PE=4 SV=1[more]
BLAST of CmoCh02G002370 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.14.4e-5481.88 nuclear factor Y, subunit B3[more]
AT5G47640.13.8e-4258.22 nuclear factor Y, subunit B2[more]
AT2G13570.15.0e-4273.50 nuclear factor Y, subunit B7[more]
AT3G53340.12.7e-4064.08 nuclear factor Y, subunit B10[more]
AT2G47810.19.8e-3867.89 nuclear factor Y, subunit B5[more]
BLAST of CmoCh02G002370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128334|ref|XP_008464158.1|6.7e-8187.20PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo][more]
gi|449444474|ref|XP_004139999.1|5.9e-7784.83PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus][more]
gi|837378456|gb|AKM95037.1|7.4e-7285.51nuclear transcription factor Y subunit B-11 [Vernicia fordii][more]
gi|802669922|ref|XP_012081482.1|2.8e-7184.47PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas][more]
gi|1009127675|ref|XP_015880819.1|4.5e-6980.58PREDICTED: nuclear transcription factor Y subunit B-3-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0016301 kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G002370.1CmoCh02G002370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 58..74
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 27..91
score: 6.4
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 17..127
score: 1.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 24..128
score: 4.66
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 93..111
score: 9.0E-22coord: 55..73
score: 9.0E-22coord: 74..92
score: 9.0
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 166..208
score: 1.1E-109coord: 1..150
score: 1.1E
NoneNo IPR availablePANTHERPTHR11064:SF27NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATEDcoord: 1..150
score: 1.1E-109coord: 166..208
score: 1.1E