CsaV3_6G009670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G009670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNuclear transcription factor Y subunit B
Locationchr6 : 7816316 .. 7818313 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATATATATATTTCCAAGTAAAATAAATATATAAGAAGATGTTATGGGTAGCCAATATTAGATTCATTTATTAAGAATTAGGAGCAGAAGCCGAATTGGCCGCCCGAGATATTTAAAGTAATACAAGATTATTATTATTCACTTGCGAGTGTTCCGTAAAACTAAAACAAATAAAAAACGACAAATAATCGATCGCCACGTAGAACTATACACACCGTTAGATCAACGCCGTTCCTTAGCCAATCCAACACTCCAGATATTTCCACGAAGCGTACTCTTATCGACAAATAAACGGTGAGAAATCAAAAACGTGTCGCTCCCGATTGCATTATTAGCCCAAACGACTCGACGGACTCTAACAACTCCCCTTCTGCTCCCCCTCACCTGTTTTCTTGGAGTCTTTCTTCTCCGGCGGCAACTTTCCGTTTCTCTTTATATTCAGATTTCCAATTCCGGCCTTCCGGCATCCTTAAGAATTCCGGTCATTCCTTGATCAACAAACACTACTCTCCAAATATCATTCATCATCTCTCTATTAACTAATTTCATTTTCTTCTTGCAGGATAATCGGCCCCCCTTTTCCGTTTCGCGTCGCCGGCGCTGGAAAATTGTACCTCGTGTCTTTCTATTATCTGATTCTTTTTTCATCTCATGACCGTGTTTTCTTTCTCTTCTTCTTTTTAATTCCAATGAGTTTCTGATAGGCGTAGAATAACATCGCTGATGATAATCTCTTGTTTTGGGATACGATTCTGGAATCGAAGTTTAGCGTTTTAGCTCAATAGAGTTTCGCAATTCGATTTTTCTTCTTTCTCGTTTCTTATATGTTCTTTGAGAGAAGGAATCGTTCCGGTCAATTTTGATAGTGAAAAGTGGAAAGGATTCGGTCTGTATTCTTTCCGTAACTAAAATTGATAGTTAAAGTAAGTGTTGTGGATCGTTGTTATGAGAATGGATCGAGAGGAGAAAAGGTACGCATCGTAGTTCATAAGCTTTCGACAGCCCTAGGAGGAGAAATTGGTTGAGATTGTGAAATCGTTAGAGAGAGAGGGCGTTTAGAAATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAGTGGTGTGGGACTGCTGCAAGGCCAAGCTAAGTGGGCTATGTGCTAGTTGGAACCTTTTAAAGGTTCTCCAACTTTTGAGCATCATTGATGACATTTTAGGAAGTTAATAAGAATTTTTTTTCCTCTTTTTGGGTCATTGAAAGTTGTGGAAAACTACTTTGGGTCTTTGTCAAATTTCTCTATTTTTCCTTTTTTTTTTTCCTTGTATAAGTGTAATTTGTGTATCTTGTGTGTAAGAGGGATATATTGATAAATATGATGGCATTTGTACAATTGTAACCCCTAATTTTACACCAAACTACTTACTAATTGCTAAGACCCTTTTCTCCT

mRNA sequence

ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG

Coding sequence (CDS)

ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSGKGGSGGASGTGHR
Homology
[Close]
BLAST of CsaV3_6G009670 vs. NCBI nr
Match: XP_004139999.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothetical protein Csa_6G112490 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 9.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. NCBI nr
Match: XP_008464158.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_008464159.1 PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 9.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. NCBI nr
Match: XP_022140566.1 (nuclear transcription factor Y subunit B-3-like, partial [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 9.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. NCBI nr
Match: XP_022943898.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 5.9e-62
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. NCBI nr
Match: XP_023513391.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 2.9e-61
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEK 127
           GRQGEK
Sbjct: 121 GRQGEK 126

[Close]
BLAST of CsaV3_6G009670 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-54
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQG 125
            GRQG
Sbjct: 121 AGRQG 123

[Close]
BLAST of CsaV3_6G009670 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0 

Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGR 123
           ++ +GR
Sbjct: 121 RTGLGR 126

[Close]
BLAST of CsaV3_6G009670 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 174.5 bits (441), Expect = 6.7e-44
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 19  LSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 78
           L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET+QECVSEFISF+T EASDKCQREK
Sbjct: 25  LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREK 84

Query: 79  RKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 126
           RKTINGDDLLWAM TLGFE+Y++PLK YL +YREMEG+    G+ GE
Sbjct: 85  RKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGE 131

[Close]
BLAST of CsaV3_6G009670 vs. TAIR10
Match: AT2G37060.1 (nuclear factor Y, subunit B8)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-43
Identity = 86/120 (71.67%), Postives = 99/120 (82.50%), Query Frame = 0 

Query: 6   NESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 65
           +ESGG  S  +  L  +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF
Sbjct: 15  HESGGDQSPRS--LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISF 74

Query: 66  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 125
           +T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YL +YREMEG+     + G+
Sbjct: 75  VTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGD 132

[Close]
BLAST of CsaV3_6G009670 vs. TAIR10
Match: AT2G13570.1 (nuclear factor Y, subunit B7)

HSP 1 Score: 166.0 bits (419), Expect = 2.4e-41
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 25  DRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTING 84
           DRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISF+TGEASDKCQREKRKTING
Sbjct: 38  DRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 97

Query: 85  DDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK 118
           DD++WA+TTLGFE+YV PLK YL KYR+ EGEK
Sbjct: 98  DDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-53
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQG 125
            GRQG
Sbjct: 121 AGRQG 123

[Close]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.5e-50
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0 

Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGR 123
           ++ +GR
Sbjct: 121 RTGLGR 126

[Close]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match: sp|Q69J40|NFYBA_ORYSJ (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M DSDNESGG  SNA    SA+EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKS 119
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RE+EGEK+
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA 117

[Close]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match: sp|Q75IZ7|NFYB8_ORYSJ (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.7e-49
Identity = 100/118 (84.75%), Postives = 110/118 (93.22%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSA-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M DSDN+SGG ++ A  ELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK 118
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE+
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER 118

[Close]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match: sp|Q60EQ4|NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-44
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0 

Query: 22  KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 81
           +EQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 37  REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 96

Query: 82  INGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 126
           INGDDLLWAM TLGFE+Y+EPLK YLQKYREMEG+     + G+
Sbjct: 97  INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGD 140

[Close]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match: tr|A0A1S3CMC5|A0A1S3CMC5_CUCME (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.0e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match: tr|A0A0A0KFU2|A0A0A0KFU2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112490 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.0e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match: tr|A0A067K1C4|A0A067K1C4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18501 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 4.3e-61
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GRQGEKD 128
           GRQGEKD
Sbjct: 121 GRQGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match: tr|A0A0H3XSM1|A0A0H3XSM1_VERFO (Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii OX=73154 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.1e-60
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELSA+EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQKYREMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSM 120

Query: 121 GRQGEKD 128
           GR GEKD
Sbjct: 121 GRPGEKD 127

[Close]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match: tr|A0A200RBS7|A0A200RBS7_9MAGN (Transcription factor OS=Macleaya cordata OX=56857 GN=BVC80_1663g24 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.4e-59
Identity = 120/127 (94.49%), Postives = 124/127 (97.64%), Query Frame = 0 

Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHN+NANSELS +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNNNANSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK YLQK+REMEGEKS+M
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKFREMEGEKSSM 120

Query: 121 GRQGEKD 128
           GR GEKD
Sbjct: 121 GRPGEKD 127

The following BLAST results are available for this feature:
BLAST of CsaV3_6G009670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139999.19.1e-63100.00PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN4661... [more]
XP_008464158.19.1e-63100.00PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_0084641... [more]
XP_022140566.19.1e-63100.00nuclear transcription factor Y subunit B-3-like, partial [Momordica charantia][more]
XP_022943898.15.9e-6298.43nuclear transcription factor Y subunit B-3-like [Cucurbita moschata][more]
XP_023513391.12.9e-6198.41nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_6G009670 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.11.9e-5487.20nuclear factor Y, subunit B3[more]
AT5G47640.11.9e-5179.37nuclear factor Y, subunit B2[more]
AT3G53340.16.7e-4475.70nuclear factor Y, subunit B10[more]
AT2G37060.13.3e-4371.67nuclear factor Y, subunit B8[more]
AT2G13570.12.4e-4184.95nuclear factor Y, subunit B7[more]
BLAST of CsaV3_6G009670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23310|NFYB3_ARATH3.4e-5387.20Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q9FGJ3|NFYB2_ARATH3.5e-5079.37Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q69J40|NFYBA_ORYSJ1.7e-4985.59Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3... [more]
sp|Q75IZ7|NFYB8_ORYSJ8.7e-4984.75Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39... [more]
sp|Q60EQ4|NFYB3_ORYSJ2.9e-4481.73Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CsaV3_6G009670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CMC5|A0A1S3CMC5_CUCME6.0e-63100.00nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021... [more]
tr|A0A0A0KFU2|A0A0A0KFU2_CUCSA6.0e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112490 PE=4 SV=1[more]
tr|A0A067K1C4|A0A067K1C4_JATCU4.3e-6196.85Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18501 PE=4 SV=1[more]
tr|A0A0H3XSM1|A0A0H3XSM1_VERFO2.1e-6096.06Nuclear transcription factor Y subunit B-11 OS=Vernicia fordii OX=73154 PE=2 SV=... [more]
tr|A0A200RBS7|A0A200RBS7_9MAGN2.4e-5994.49Transcription factor OS=Macleaya cordata OX=56857 GN=BVC80_1663g24 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0016301 kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G009670.1CsaV3_6G009670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 55..73
score: 50.24
coord: 93..111
score: 44.86
coord: 74..92
score: 38.52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..140
NoneNo IPR availablePANTHERPTHR11064:SF87SUBFAMILY NOT NAMEDcoord: 1..199
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..199
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 27..91
e-value: 6.0E-28
score: 96.8
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 16..132
e-value: 1.0E-46
score: 160.2
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 24..126
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 58..74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G009670CSPI06G09270Wild cucumber (PI 183967)cpicucB364
CsaV3_6G009670Cucsa.120240Cucumber (Gy14) v1cgycucB159
CsaV3_6G009670CmaCh02G002340Cucurbita maxima (Rimu)cmacucB0741
CsaV3_6G009670CmaCh20G006860Cucurbita maxima (Rimu)cmacucB0667
CsaV3_6G009670CmoCh20G006820Cucurbita moschata (Rifu)cmocucB0653
CsaV3_6G009670CmoCh02G002370Cucurbita moschata (Rifu)cmocucB0730
CsaV3_6G009670Cp4.1LG05g13950Cucurbita pepo (Zucchini)cpecucB0935
CsaV3_6G009670Cp4.1LG16g03860Cucurbita pepo (Zucchini)cpecucB0361
CsaV3_6G009670MELO3C025951Melon (DHL92) v3.5.1cucmeB431
CsaV3_6G009670ClCG02G009200Watermelon (Charleston Gray)cucwcgB471
CsaV3_6G009670Lsi10G000420Bottle gourd (USVL1VR-Ls)cuclsiB441
CsaV3_6G009670MELO3C025951.2Melon (DHL92) v3.6.1cucmedB421
CsaV3_6G009670Cla97C02G035590Watermelon (97103) v2cucwmbB460
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G009670Silver-seed gourdcarcucB0231
CsaV3_6G009670Silver-seed gourdcarcucB0382
CsaV3_6G009670Silver-seed gourdcarcucB0847
CsaV3_6G009670Cucumber (Gy14) v2cgybcucB298
CsaV3_6G009670Cucumber (Gy14) v2cgybcucB344
CsaV3_6G009670Cucumber (Gy14) v1cgycucB115
CsaV3_6G009670Cucurbita maxima (Rimu)cmacucB0632
CsaV3_6G009670Cucurbita moschata (Rifu)cmocucB0617
CsaV3_6G009670Cucurbita pepo (Zucchini)cpecucB0316
CsaV3_6G009670Wild cucumber (PI 183967)cpicucB411
CsaV3_6G009670Bottle gourd (USVL1VR-Ls)cuclsiB455
CsaV3_6G009670Melon (DHL92) v3.5.1cucmeB469
CsaV3_6G009670Melon (DHL92) v3.6.1cucmedB459
CsaV3_6G009670Watermelon (Charleston Gray)cucwcgB464
CsaV3_6G009670Watermelon (97103) v1cucwmB541
CsaV3_6G009670Watermelon (97103) v2cucwmbB450
CsaV3_6G009670Wax gourdcucwgoB579
CsaV3_6G009670Wax gourdcucwgoB629
CsaV3_6G009670Cucumber (Chinese Long) v3cuccucB214