Cp4.1LG05g08560 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g08560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Heat shock family protein
Location	Cp4.1LG05 : 5578319 .. 5579481 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGTCATCAAGAGAAGTTAGAGTAAAGAGAAATTAGAATTACCGGAAAGGAAAATCGAACACAACGCCGATGGATTCTTCGTCCAAAAGCTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCATGTTCTTACCGCCACCCTCAAAGGTTTGACATTTTCCCCCTCTTTTCATTTATTTGAACTTAATTAGATCAGATCAAATAGCTTAAAAATAAAATAGAAATTAAATTAAATCGCTAAAAACACAAACAAATTTTAATTTAAGAATGATCGTGTGTGTTTATAAATAAAGAATACTCTCTTGATAGCAAAATCATGAAAGTTCAGGTGACATCATACAATTGTATAGAGTCGTGTTCGTCTAACCCTTACCATTGAATTTGGGAGCTTTTCGTCAGATTTCACGAGGAACGATATGAAAGTTCAGGTGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGGAAGTGGCTCCGATTCCTCAAGGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAACACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACCGAAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCCAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCCCCACTCCTTTAAAGCCACATGAGGCGGCCAGAGCGCCAGCAAGTACCCAAAAATCCGGCGAGAAGCCCACCGCGGGAGGCGGAGAGCCGGTTCAAGATTTAGCTGCGAAGGGCAGAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAAGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGGGGAGAAGGAAGGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTGTGTTTGTGGTTGCTTACTTCAATCTTTACAAACAATGA

mRNA sequence

AATCGTCATCAAGAGAAGTTAGAGTAAAGAGAAATTAGAATTACCGGAAAGGAAAATCGAACACAACGCCGATGGATTCTTCGTCCAAAAGCTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCATGTTCTTACCGCCACCCTCAAAGTTCAGGTGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGGAAGTGGCTCCGATTCCTCAAGGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAACACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACCGAAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCCAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCCCCACTCCTTTAAAGCCACATGAGGCGGCCAGAGCGCCAGCAAGTACCCAAAAATCCGGCGAGAAGCCCACCGCGGGAGGCGGAGAGCCGGTTCAAGATTTAGCTGCGAAGGGCAGAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAAGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGGGGAGAAGGAAGGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTGTGTTTGTGGTTGCTTACTTCAATCTTTACAAACAATGA

Coding sequence (CDS)

ATGGATTCTTCGTCCAAAAGCTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCATGTTCTTACCGCCACCCTCAAAGTTCAGGTGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAGCGGGAAGTGGCTCCGATTCCTCAAGGAAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAACACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACCGAAGCCCAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCCAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCCCCACTCCTTTAAAGCCACATGAGGCGGCCAGAGCGCCAGCAAGTACCCAAAAATCCGGCGAGAAGCCCACCGCGGGAGGCGGAGAGCCGGTTCAAGATTTAGCTGCGAAGGGCAGAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAAGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGGGGAGAAGGAAGGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTGTGTTTGTGGTTGCTTACTTCAATCTTTACAAACAATGA

Protein sequence

MDSSSKSFQDIEPQINWQHYPESHVLTATLKVQVTSTGKLRISGERRLTSGKWLRFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTAAKPTDRPNTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAAKGRTEEETEEETEEETEEKAKAHTKKKLQKRVEGEGTGKEEIGSKMGEKGKEGGGHGRGEKEGEWVRRGEWLRTNMVNLALGAAVFVVAYFNLYKQ

Homology

[Close]

BLAST of Cp4.1LG05g08560 vs. TrEMBL
Match: A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600110 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-47
Identity = 152/356 (42.70%), Postives = 187/356 (52.53%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K F++ EP+ +W  +P++ VL           LKVQVTSTGKLR+SGER+L+SGKWL
Sbjct: 5   SSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSSGKWL 64

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTA- 122
           RF KEIDIP DADT+ ISAKLE+G+LYV QP+  SA SSN PP Q PKPKA+SQPPP+A 
Sbjct: 65  RFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSSNIPPVQQPKPKAQSQPPPSAT 124

Query: 123 ---------------------------------AKPTDRPNTPKSPNER----------- 182
                                            A PT  PN P+S NER           
Sbjct: 125 KPTADPPTVRPNTPKSQNERPEPPKPAATETTVAPPTVGPNAPESQNERAQIPYIKTNVK 184

Query: 183 ---------PQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAAKGRTE 242
                    PQSQA+GKQ PTP KP +A  APA   K  +  + G G+PV+DL  K    
Sbjct: 185 NYAPSQNDRPQSQASGKQIPTPPKPEKATGAPARIPKPEKTSSMGSGQPVEDLGKK---- 244

Query: 243 EETEEETEEETEEKAKAHTK--------KKLQKRVEGEG-------TGKEEIGSKMGEKG 272
                   E+TEEK KAHTK        ++  K  EGE         GKEE+G +   + 
Sbjct: 245 --------EKTEEKGKAHTKLRDALEKTREEGKEEEGESKMEEKDEKGKEEVGEEKRRRR 304

[Close]

BLAST of Cp4.1LG05g08560 vs. TrEMBL
Match: A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600100 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 105/249 (42.17%), Postives = 135/249 (54.22%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K+F++ EP+ +W H+P+SHVL           L+VQVTSTGKLR+SG+R L++G WL
Sbjct: 7   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSNGTWL 66

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTAA 122
           RF KEIDIP DADT+KISAKLE+GILYV QP+  SA SSN PP Q  KPK +SQ PP A 
Sbjct: 67  RFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHPPAAT 126

Query: 123 KPTDRPNT--PKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQD 182
           KPT  P T  PK+PN R +        PT   P     A  +  K+  K     G P   
Sbjct: 127 KPTADPPTVRPKAPNRRNEG------LPTAFYP-----AIKTNLKNFPKSGDETGTPYPS 186

Query: 183 LAAKGRTEEETEEETEEETEEKAKAHTKKKLQKRVEGEGTGK---------EEIGS-KMG 232
           + AK         +      +  K +  K    R + + +GK         E  G+  +G
Sbjct: 187 IDAK---------KMHFHFPQTVKPNAPKSQNDRPQSQASGKQIPTPLKLQEATGAPALG 235

[Close]

BLAST of Cp4.1LG05g08560 vs. TrEMBL
Match: A0A0A0LZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600120 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-17
Identity = 105/278 (37.77%), Postives = 134/278 (48.20%), Query Frame = 1


Query: 48  LTSGKWLRFLKEIDIPEDADTNKISA----------------------------KLEKGI 107
           LT+GKWLRF KEIDIP+DADT+KIS+                            + E   
Sbjct: 39  LTNGKWLRFQKEIDIPDDADTDKISSKLEQGILYVKQPKKPSATSSNIPPSQNERDEPLK 98

Query: 108 LYVTQPRNTSAVSSNNPPAQPPKPKA----------------ESQPPPTAAK-----PTD 167
              T+P        +N P    +P++                   P P A K     PT 
Sbjct: 99  PAATEPTVAPPTVGSNAPESQSEPRSWIIIPAPDFRSFRNERADTPKPAATKSTVYPPTV 158

Query: 168 RPNTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAAKGR 227
           RPN PKS N+RP+SQA+GKQ PTP KP EA  APA   KSGE  + G G+PV+DLA K  
Sbjct: 159 RPNAPKSQNDRPKSQASGKQIPTPPKPEEATGAPARIPKSGETSSMGCGQPVEDLAKK-- 218

Query: 228 TEEETEEETEEETEEKAKAHTKKK--LQK--RVEGEGTGKEEIGSKMGEKGKEGGGHGRG 272
                     E+TE+K K HTK +  L+K  R      GK+++  +  E G+E G   R 
Sbjct: 219 ----------EKTEDKGKIHTKLRDALEKTRRRRRLRRGKKKLEKRSEEMGEESGRLRRR 278

[Close]

BLAST of Cp4.1LG05g08560 vs. TrEMBL
Match: A0A0A0LX62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600080 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-15
Identity = 79/172 (45.93%), Postives = 93/172 (54.07%), Query Frame = 1


Query: 121 NTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAAKGRTE 180
           N PKS N+RPQSQA+GKQ PTP KP EA  APAS  K GE  + G G+P++DLA      
Sbjct: 194 NPPKSQNDRPQSQASGKQIPTPPKPQEATGAPASIPKPGETSSMGSGQPIEDLA------ 253

Query: 181 EETEEETEEETEEKAKAHTKKKLQKRVEGEGTGKEEIGSKMGEKGKEGGGHGR------- 240
                  E++TEEK KAHT  KLQ  +E      EE GSKM EK KE     +       
Sbjct: 254 ------KEDKTEEKGKAHT--KLQDALE---KTSEEGGSKMAEKEKEEVEKEKRRRMKRM 313

Query: 241 ----GEKEGEWVRRGEW----------LRTNMVNLALGAAVFVVAYFNLYKQ 272
               GE+ G   RR  +          LRTNMV LALG AVF + Y NL K+
Sbjct: 314 IEEMGEESGRLRRRERYKQVIDGVVKELRTNMVTLALGVAVFGILYLNLSKK 348

[Close]

BLAST of Cp4.1LG05g08560 vs. TrEMBL
Match: G7KHG4_MEDTR (Hsp20/alpha crystallin family protein OS=Medicago truncatula GN=MTR_5g087450 PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 67/208 (32.21%), Postives = 90/208 (43.27%), Query Frame = 1


Query: 4   SSKSFQDIEPQINWQHYPESHVLTATL--------KVQVTSTGKLRISGERRLTSGKWLR 63
           + + + + EP  +W H   S  L   L        +VQVTST  LR+SGER++   KW R
Sbjct: 10  ADRIYDEFEPPSDWDHEDTSDTLILMLPGFKKDQLRVQVTSTRVLRVSGERQMNEKKWRR 69

Query: 64  FLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTAAK 123
           F KE  IP  +DTN I AK E GILY+  P+    +S  N    P KP  + +P     K
Sbjct: 70  FRKEFSIPPHSDTNNIGAKFEAGILYIKLPK---LISQQNIVPTPTKPTTQQEP----QK 129

Query: 124 PTDRPNTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAA 183
           P      P+ PN  PQ     KQ                 Q+  +K      E V     
Sbjct: 130 PQQPATIPQKPNTAPQVSDQKKQ---------------VVQQEPKKEI----EEVSQRKG 189

Query: 184 KGRTEEETEEETEEETEEKAKAHTKKKL 204
           KG+ EE  E+  +   +  +K   KK L
Sbjct: 190 KGKAEELKEDIDDVNNKVASKVAEKKSL 191

[Close]

BLAST of Cp4.1LG05g08560 vs. TAIR10
Match: AT2G27140.1 (AT2G27140.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 59/178 (33.15%), Postives = 80/178 (44.94%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           ++++ + + EP  NW+       LT          LKVQVT+T KLR+ G+R   + KW+
Sbjct: 9   NANRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWI 68

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNP----PAQPPKPKAESQPP 122
           RF KE  IP + D + +SAK E   L V  PR        +P       PP PK     P
Sbjct: 69  RFRKEFPIPPNIDVDSVSAKFEGANLVVRLPRTEPMGKQPSPIGTATKPPPVPKENPNLP 128

Query: 123 PTAAKPTDRPNTPKSPNERP-QSQANGKQSPTPLKPHEAARAPASTQKSGE-KPTAGG 167
             +AK   +P      NE   + QA   QSP P + +E A       K  E K   GG
Sbjct: 129 SPSAKEKVQPPKETRENETELEKQAEKIQSPKPARENEEALNQDYRSKVNEYKENLGG 186

[Close]

BLAST of Cp4.1LG05g08560 vs. TAIR10
Match: AT1G54400.1 (AT1G54400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 1


Query: 1   MDSSSKSFQD-IEPQINWQHYPESHVLTATL---------KVQVTSTGKLRISGERRLTS 60
           M+ S   F D IEP   W+   +  +L   L         K+Q+ ++G L I+G   +  
Sbjct: 5   MEGSQTHFYDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITGGCPVDQ 64

Query: 61  GKWLRFLKEIDIPEDADTNKISAKLEKGILYVTQPRN-------TSAVSSNNPPAQPPK 103
            K +RF+KE  + +D   N+I AK  KG+LYVT P+        + ++    P  Q PK
Sbjct: 65  TKTIRFMKETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPIAAGLSVSLKGATPQHQTPK 123

[Close]

BLAST of Cp4.1LG05g08560 vs. TAIR10
Match: AT5G20970.1 (AT5G20970.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-06
Identity = 60/219 (27.40%), Postives = 93/219 (42.47%), Query Frame = 1


Query: 8   FQDIEPQINWQHYPESHVLTATL--------KVQVTSTGKLRISGERRLTSGKWLRFLKE 67
           +Q+ EP   W   P++ VL A L        KV VT+T KLR++GER     KW+RF +E
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 68  IDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTAAKPTDR 127
           I +P   D + +SA  +   LY+  P+  + +    PP             P   KP D+
Sbjct: 70  IPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQTKPPT------------PVIMKPHDQ 129

Query: 128 PNT-----PKSPNERPQSQANG--KQSPTPLKPHEAARAPASTQKSGEKPTAGG-----G 187
                   PK+  E+P        K     LK H+A +     Q+   +    G     G
Sbjct: 130 HERKQGQGPKAMVEKPSGGKTDQLKHDAQQLK-HDAQQLKHDAQQKAREVVQSGKNKLTG 189

Query: 188 EPVQDLAAKGRTEEETEEETEEETEEKAKAHTKKKLQKR 207
           EP   L++K   +++   +  E+ +E      K+   KR
Sbjct: 190 EPKGPLSSKDDEKDKVGAKWFEKYKEATGNVVKEAKNKR 215

[Close]

BLAST of Cp4.1LG05g08560 vs. NCBI nr
Match: gi|778665351|ref|XP_004144143.2| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 2.8e-47
Identity = 152/356 (42.70%), Postives = 187/356 (52.53%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K F++ EP+ +W  +P++ VL           LKVQVTSTGKLR+SGER+L+SGKWL
Sbjct: 5   SSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSSGKWL 64

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTA- 122
           RF KEIDIP DADT+ ISAKLE+G+LYV QP+  SA SSN PP Q PKPKA+SQPPP+A 
Sbjct: 65  RFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSSNIPPVQQPKPKAQSQPPPSAT 124

Query: 123 ---------------------------------AKPTDRPNTPKSPNER----------- 182
                                            A PT  PN P+S NER           
Sbjct: 125 KPTADPPTVRPNTPKSQNERPEPPKPAATETTVAPPTVGPNAPESQNERAQIPYIKTNVK 184

Query: 183 ---------PQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLAAKGRTE 242
                    PQSQA+GKQ PTP KP +A  APA   K  +  + G G+PV+DL  K    
Sbjct: 185 NYAPSQNDRPQSQASGKQIPTPPKPEKATGAPARIPKPEKTSSMGSGQPVEDLGKK---- 244

Query: 243 EETEEETEEETEEKAKAHTK--------KKLQKRVEGEG-------TGKEEIGSKMGEKG 272
                   E+TEEK KAHTK        ++  K  EGE         GKEE+G +   + 
Sbjct: 245 --------EKTEEKGKAHTKLRDALEKTREEGKEEEGESKMEEKDEKGKEEVGEEKRRRR 304

[Close]

BLAST of Cp4.1LG05g08560 vs. NCBI nr
Match: gi|659100301|ref|XP_008451025.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 146/364 (40.11%), Postives = 177/364 (48.63%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K+F++ EP+ +W H+P+SHVL           LKVQVTSTGKLR+SGER+L +GKWL
Sbjct: 5   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVS---------------------- 122
           RF KEIDIP DADT+KISAKLE+GILYV QP+     S                      
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQPKPKAQSQPPPAAT 124

Query: 123 ---------------SNNPPAQPPKPKAESQP--PPT----------------------- 182
                          S N  A+PPKP A      PPT                       
Sbjct: 125 KPTADPPTVRPSVPKSRNERAEPPKPAATEPTVAPPTVGPKAPESQNERADVPSTDAKKT 184

Query: 183 -----AAKPTDRPNTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGG 242
                A +PT  PN PKS N+RPQSQA+GKQ PTP KP EA  A          P+ G G
Sbjct: 185 NVKNYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEEATGA----------PSMGSG 244

Query: 243 EPVQDLAAKGRTEEETEEETEEETEEKAKAHTKKKLQKRVEGEGTGKEEIGSKMGEKGKE 269
           +PV+DLA K            ++TEEK KAHTK +       E   +EE GSK  E+ KE
Sbjct: 245 QPVEDLAKK------------DKTEEKGKAHTKLQDALEKTREEGKEEEGGSKKAEEQKE 304

[Close]

BLAST of Cp4.1LG05g08560 vs. NCBI nr
Match: gi|659100303|ref|XP_008451026.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 4.8e-39
Identity = 144/357 (40.34%), Postives = 174/357 (48.74%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K+F++ EP+ +W H+P+SHVL           LKVQVTSTGKLR+SGER+L +GKWL
Sbjct: 5   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVS---------------------- 122
           RF KEIDIP DADT+KISAKLE+GILYV QP+     S                      
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQPKPKAQSQPPPAAT 124

Query: 123 ---------------SNNPPAQPPKPKAESQPPPTAAKPTDRPNTPKSPNER-------- 182
                          S N  A+PPKP A     PT A PT  P  P+S NER        
Sbjct: 125 KPTADPPTVRPSVPKSRNERAEPPKPAATE---PTVAPPTVGPKAPESQNERADVPSTDA 184

Query: 183 ---------------PQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQDLA 242
                          PQSQA+GKQ PTP KP EA  A          P+ G G+PV+DLA
Sbjct: 185 KKTNVKNYAPSQNDRPQSQASGKQIPTPPKPEEATGA----------PSMGSGQPVEDLA 244

Query: 243 AKGRTEEETEEETEEETEEKAKAHTKKKLQKRVEGEGTGKEEIGSKMGEKGKEGGGHGR- 269
            K            ++TEEK KAHTK +       E   +EE GSK  E+ KE  G  + 
Sbjct: 245 KK------------DKTEEKGKAHTKLQDALEKTREEGKEEEGGSKKAEEQKEEVGEEKR 304

[Close]

BLAST of Cp4.1LG05g08560 vs. NCBI nr
Match: gi|659100306|ref|XP_008451028.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 137/313 (43.77%), Postives = 159/313 (50.80%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTATL--------KVQVTSTGKLRISGERRLTSGKWL 62
           SS+K+FQ+ EP+ +W H+P+SHVL   L        KVQVTSTGKLR+SGER+L +GKWL
Sbjct: 5   SSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVS--------------SNNPPA-- 122
           RF KEIDIP DADT+KISAKLE+GILYV QP+  SA S              S  PPA  
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQPKPKPQSQPPPAAT 124

Query: 123 ---------------------QPPKPKAESQP--PPT----------------------- 182
                                +PPKP A      PPT                       
Sbjct: 125 KPTADPPTVRPSAPKSQNERSEPPKPAATEPTVAPPTVGPKAPESQNERADIPSIDARKT 184

Query: 183 -----AAKPTDRPNTPKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGG 240
                A +PT  PN PKS N+RPQSQA+GKQ PTP KP EA  APA T       + G G
Sbjct: 185 NYINYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEEATGAPAETS------SMGSG 244

[Close]

BLAST of Cp4.1LG05g08560 vs. NCBI nr
Match: gi|778665348|ref|XP_011648542.1| (PREDICTED: protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 5.3e-30
Identity = 129/314 (41.08%), Postives = 161/314 (51.27%), Query Frame = 1


Query: 3   SSSKSFQDIEPQINWQHYPESHVLTA--------TLKVQVTSTGKLRISGERRLTSGKWL 62
           SS+K+F++ EP+ +W H+P+SHVL           L+VQVTSTGKLR+SG+R L++G WL
Sbjct: 7   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSNGTWL 66

Query: 63  RFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESQPPPTAA 122
           RF KEIDIP DADT+KISAKLE+GILYV QP+  SA SSN PP Q  KPK +SQ PP A 
Sbjct: 67  RFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQSKPKVQSQHPPAAT 126

Query: 123 KPTDRPNT--PKSPNERPQSQANGKQSPTPLKPHEAARAPASTQKSGEKPTAGGGEPVQD 182
           KPT  P T  PK+PN R +        PT   P     A  +  K+  K     G P   
Sbjct: 127 KPTADPPTVRPKAPNRRNEG------LPTAFYP-----AIKTNLKNFPKSGDETGTPYPS 186

Query: 183 LAAKGR----------TEEETEEETEEETEEKAKAHTKKKLQKRV----------EGEGT 242
           + AK               +++ +  +      +  T  KLQ+             G G 
Sbjct: 187 IDAKKMHFHFPQTVKPNAPKSQNDRPQSQASGKQIPTPLKLQEATGAPALGETSSTGSGH 246

Query: 243 GKEEIG--SKMGEKGK--------------EGGGHGRGEKEGEWVRRGEWLRTNMVNLAL 271
             E++    K  EKGK              EG     G K  E   + E LRTNMV LAL
Sbjct: 247 PVEDLAKKDKTEEKGKSHTKLRDAQEKTREEGKEEEVGSKMAE-KEKEEELRTNMVTLAL 306

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g08560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g08560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2E7_CUCSA	2.0e-47	42.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600110 PE=3 SV=1	[more]
A0A0A0LWW1_CUCSA	1.1e-26	42.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600100 PE=3 SV=1	[more]
A0A0A0LZR6_CUCSA	8.0e-17	37.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600120 PE=3 SV=1	[more]
A0A0A0LX62_CUCSA	4.4e-15	45.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600080 PE=4 SV=1	[more]
G7KHG4_MEDTR	1.4e-08	32.21	Hsp20/alpha crystallin family protein OS=Medicago truncatula GN=MTR_5g087450 PE=...	[more]

BLAST of Cp4.1LG05g08560 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27140.1	3.2e-09	33.15	HSP20-like chaperones superfamily protein	[more]
AT1G54400.1	2.3e-07	31.09	HSP20-like chaperones superfamily protein	[more]
AT5G20970.1	4.4e-06	27.40	HSP20-like chaperones superfamily protein	[more]

BLAST of Cp4.1LG05g08560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665351\|ref\|XP_004144143.2\|	2.8e-47	42.70	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus]	[more]
gi\|659100301\|ref\|XP_008451025.1\|	1.7e-39	40.11	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X...	[more]
gi\|659100303\|ref\|XP_008451026.1\|	4.8e-39	40.34	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like isoform X2 [Cucumis m...	[more]
gi\|659100306\|ref\|XP_008451028.1\|	5.0e-36	43.77	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ...	[more]
gi\|778665348\|ref\|XP_011648542.1\|	5.3e-30	41.08	PREDICTED: protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g08560.1	Cp4.1LG05g08560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 30..90 score: 4.
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 45..86 score: 9
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 4..89 score: 2.
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 10..89 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 180..200 scor
None	No IPR available	PANTHER	PTHR11527:SF156	HEAT SHOCK FAMILY PROTEIN	coord: 8..105 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g08560	CmaCh10G010000	Cucurbita maxima (Rimu)	cmacpeB099
Cp4.1LG05g08560	CmoCh10G010550	Cucurbita moschata (Rifu)	cmocpeB075
Cp4.1LG05g08560	Cla011096	Watermelon (97103) v1	cpewmB695
Cp4.1LG05g08560	ClCG03G014410	Watermelon (Charleston Gray)	cpewcgB672
Cp4.1LG05g08560	Lsi06G004090	Bottle gourd (USVL1VR-Ls)	cpelsiB628
Cp4.1LG05g08560	CsaV3_1G041730	Cucumber (Chinese Long) v3	cpecucB0878
Cp4.1LG05g08560	Carg06129	Silver-seed gourd	carcpeB0038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g08560	Watermelon (97103) v1	cpewmB744
Cp4.1LG05g08560	Melon (DHL92) v3.5.1	cpemeB668
Cp4.1LG05g08560	Melon (DHL92) v3.6.1	cpemedB798
Cp4.1LG05g08560	Cucumber (Chinese Long) v3	cpecucB0936
Cp4.1LG05g08560	Wax gourd	cpewgoB0972
Cp4.1LG05g08560	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g08560	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g08560	Wild cucumber (PI 183967)	cpecpiB758
Cp4.1LG05g08560	Cucumber (Chinese Long) v2	cpecuB755
Cp4.1LG05g08560	Bottle gourd (USVL1VR-Ls)	cpelsiB588
Cp4.1LG05g08560	Watermelon (Charleston Gray)	cpewcgB658