Carg06129 (gene) Silver-seed gourd

Overview
NameCarg06129
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2-like
LocationCucurbita_argyrosperma_scaffold_026 : 1212064 .. 1213034 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAAGAGAAATTAGAATTACCGGAAAGGAAAAATCGAACGCAACGCCAATGGATTCTTCGTCCAAAAACTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCACGTTCTTACCGTCACCCTCAAAGGTTTGACATTCTCCCCTTCTTTTGTGAGTTAGAACGGAGAGTCTTGTTGGTCTAACAATTACCATTAAATTTGGGATCTTTTCTGCAGATTTCACAAGGAACGATCTGAAAGTTCAGGTGACATCCACCGGAAAGTTGAGGATCACCGGCGAACGGAGGCTCACCAGCGGCAAGGGGCTCCGATTCCTCAAGGAAATCGATATCCCAGCAGATGCCGATTCAAGCAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCAGCCGAAGCCGAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCAAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCGCCACCCCTTTAAAGCCACATGAAGCGGCCGGAGCGCCAGCGAGTACCCAAAAATCAGGCGAGAAGCCCACCACGGGAGGCGGAGAGCCGGTTCAAGATTCAGCTGCGAAGGACGGAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAGGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGTGGAGAAGGAAGGTGGAGTTGCAGAAGAGAGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTCTGTTTGTGGTTGCTTACTTCAATCTTTACAAAGAATGA

mRNA sequence

GTAAAGAGAAATTAGAATTACCGGAAAGGAAAAATCGAACGCAACGCCAATGGATTCTTCGTCCAAAAACTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCACGTTCTTACCGTCACCCTCAAAGATTTCACAAGGAACGATCTGAAAGTTCAGGTGACATCCACCGGAAAGTTGAGGATCACCGGCGAACGGAGGCTCACCAGCGGCAAGGGGCTCCGATTCCTCAAGGAAATCGATATCCCAGCAGATGCCGATTCAAGCAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCAGCCGAAGCCGAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCAAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCGCCACCCCTTTAAAGCCACATGAAGCGGCCGGAGCGCCAGCGAGTACCCAAAAATCAGGCGAGAAGCCCACCACGGGAGGCGGAGAGCCGGTTCAAGATTCAGCTGCGAAGGACGGAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAGGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGTGGAGAAGGAAGGTGGAGTTGCAGAAGAGAGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTCTGTTTGTGGTTGCTTACTTCAATCTTTACAAAGAATGA

Coding sequence (CDS)

ATGGATTCTTCGTCCAAAAACTTTCAAGATATTGAGCCTCAAATCAATTGGCAACATTATCCCGAGTCTCACGTTCTTACCGTCACCCTCAAAGATTTCACAAGGAACGATCTGAAAGTTCAGGTGACATCCACCGGAAAGTTGAGGATCACCGGCGAACGGAGGCTCACCAGCGGCAAGGGGCTCCGATTCCTCAAGGAAATCGATATCCCAGCAGATGCCGATTCAAGCAAGATCTCTGCCAAGTTGGAGAAAGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCAGCCGAAGCCGAAGGCGGAATCCCAACCGCCGCCCACCGCCGCAAAACCAACTGATCGACCAAATACCCCAAAGAGCCAAAACGAGAGACCTCAATCACAGGCAAATGGGAAACAAAGCGCCACCCCTTTAAAGCCACATGAAGCGGCCGGAGCGCCAGCGAGTACCCAAAAATCAGGCGAGAAGCCCACCACGGGAGGCGGAGAGCCGGTTCAAGATTCAGCTGCGAAGGACGGAACAGAGGAAGAAACAGAGGAGAAGGCAAAAGCACATACAAAGAAGAAATTGCAGAGGAGAGTAGAAGGGGAAGGAACGGGGAAGGAAGAAATTGGGTCAAAAATGGGGGAGAAGGGGAAGGAAGGGGGCGGCCATGGTAGGGTGGAGAAGGAAGGTGGAGTTGCAGAAGAGAGTGAATGGGTGAGAAGAGGAGAATGGTTGAGGACAAATATGGTGAATTTGGCTCTGGGGGCTGCTCTGTTTGTGGTTGCTTACTTCAATCTTTACAAAGAATGA

Protein sequence

MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQPKPKAESQPPPTAAKPTDRPNTPKSQNERPQSQANGKQSATPLKPHEAAGAPASTQKSGEKPTTGGGEPVQDSAAKDGTEEETEEKAKAHTKKKLQRRVEGEGTGKEEIGSKMGEKGKEGGGHGRVEKEGGVAEESEWVRRGEWLRTNMVNLALGAALFVVAYFNLYKE
Homology
[Close]
BLAST of Carg06129 vs. NCBI nr
Match: XP_022960894.1 (uncharacterized protein LOC111461557 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 2.7e-81
Identity = 254/277 (91.70%), Postives = 256/277 (92.42%), Query Frame = 0 

Query: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60
           MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK
Sbjct: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60

Query: 61  GLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQPXXXXXXXXXXX 120
           GLRFLKEI IPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQ P XXXXXXXXXX
Sbjct: 61  GLRFLKEIVIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQPPKXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLKPHEAAGAPASTQKSGEKPTTGGGEPVQD 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX TPLKPHEAA APASTQKSGEKPT GGGEPV+D
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXATPLKPHEAAEAPASTQKSGEKPTAGGGEPVED 180

Query: 181 SAAKDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGXXXXXXXXXXGGHGRVEKEGGV 240
           SAAKD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXX          GV
Sbjct: 181 SAAKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV 240

Query: 241 AEESEWVRRGEWLRTNMVNLALGAALFVVAYFNLYKE 278
           AE SEWVRRGEWLRTNMVNLALGAA+FVVAYFNLYKE
Sbjct: 241 AEGSEWVRRGEWLRTNMVNLALGAAVFVVAYFNLYKE 277

[Close]
BLAST of Carg06129 vs. NCBI nr
Match: XP_023533466.1 (nucleoporin NUP159-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 6.4e-59
Identity = 217/279 (77.78%), Postives = 224/279 (80.29%), Query Frame = 0 

Query: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60
           MDSSSK+FQDIEPQINWQHYPESHVLT TLKDFTRND+KVQVTSTGKLRI+GERRLTSGK
Sbjct: 1   MDSSSKSFQDIEPQINWQHYPESHVLTATLKDFTRNDMKVQVTSTGKLRISGERRLTSGK 60

Query: 61  GLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQPXXXXXXXXXXX 120
            LRFLKEIDIP DAD++KISAKLEKGILYVTQPR TSAVSSNNPPAQ P      XXXXX
Sbjct: 61  WLRFLKEIDIPEDADTNKISAKLEKGILYVTQPRNTSAVSSNNPPAQPPKPKAESXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLKPHEAAGAPASTQKSGEKPTTGGGEPVQD 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                   EKPT GGGEPVQD
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKPTAGGGEPVQD 180

Query: 181 SAAKDGT--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGXXXXXXXXXXGGHGRVEKEG 240
            AAK  T  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXX          
Sbjct: 181 LAAKGRTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 GVAEESEWVRRGEWLRTNMVNLALGAALFVVAYFNLYKE 278
                  WVRRGEWLRTNMVNLALGAA+FVVAYFNLYK+
Sbjct: 241 XXXXXXXWVRRGEWLRTNMVNLALGAAVFVVAYFNLYKQ 279

[Close]
BLAST of Carg06129 vs. NCBI nr
Match: XP_022988169.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 7.3e-39
Identity = 165/331 (49.85%), Postives = 177/331 (53.47%), Query Frame = 0 

Query: 1   MDSSSKNFQDIEPQINWQHY--PESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTS 60
           MDSSSK++QD EP I+W  +  PESH+L V L  FTRNDLKVQVTSTGKLRI+GERRLTS
Sbjct: 3   MDSSSKSYQDFEPLIDWLPHPDPESHLLLVHLLGFTRNDLKVQVTSTGKLRISGERRLTS 62

Query: 61  GKGLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQPXXXXXXXXX 120
           GK LRFLKEI IP DAD +KISAKLEKGILYVTQP+KTSAVSSNN P Q P         
Sbjct: 63  GKWLRFLKEIHIPEDADLNKISAKLEKGILYVTQPKKTSAVSSNNLPVQPPKPKAESQPP 122

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLKPHEAAGAPASTQKSGEKPTTGGGEPV 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   EKPT GGGEPV
Sbjct: 123 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKPTVGGGEPV 182

Query: 181 QDSAAKDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGXXXXXXXXXXGGHGRVE--K 240
           QD AAKD T                             IG    XXXXXX G    E  +
Sbjct: 183 QDLAAKDRTEKETEDKAKAHTKLQDASEKTRKEEGKEEIGSKMGXXXXXXDGLRMTEGKE 242

Query: 241 EGG---------------------------------------------------VAEESE 277
           +GG                                                         
Sbjct: 243 QGGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

[Close]
BLAST of Carg06129 vs. NCBI nr
Match: XP_022960896.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-35
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 0 

Query: 1   MDSSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGK 60
           MDSS K+++D EP ++  H+PESH+L V L  FTRN+L+V+VTSTGKLRI+GERRLTSGK
Sbjct: 3   MDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSTGKLRISGERRLTSGK 62

Query: 61  GLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQ 108
            LRFL EIDIP DAD++KISA+ EKGILYVTQPRKTSAVSSNNPPAQ
Sbjct: 63  WLRFLNEIDIPEDADTNKISAEFEKGILYVTQPRKTSAVSSNNPPAQ 109

[Close]
BLAST of Carg06129 vs. NCBI nr
Match: XP_008451028.1 (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           SS+KNFQ+ EP+ +W H+P+SHVL V L  F  N LKVQVTSTGKLR++GER+L +GK L
Sbjct: 5   SSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQP 110
           RF KEIDIPADAD+ KISAKLE+GILYV QP+K SA SSN PP QQP
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQP 111

[Close]
BLAST of Carg06129 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-14
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGLRFLKE 67
           +Q+ EP   W   P++ VL   L  F +  LKV VT+T KLR+TGER     K +RF +E
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 68  IDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPP 106
           I +P   D   +SA  +   LY+  P+  + +    PP
Sbjct: 70  IPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQTKPP 107

[Close]
BLAST of Carg06129 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-12
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           ++++ + + EP  NW+       LT+ L  F +  LKVQVT+T KLR+ G+R   + K +
Sbjct: 9   NANRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWI 68

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPR 95
           RF KE  IP + D   +SAK E   L V  PR
Sbjct: 69  RFRKEFPIPPNIDVDSVSAKFEGANLVVRLPR 100

[Close]
BLAST of Carg06129 vs. TAIR10
Match: AT1G54400.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-09
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 1   MDSSSKNFQD-IEPQINWQHYPESHVLTVTL-KDFTRNDLKVQVTSTGKLRITGERRLTS 60
           M+ S  +F D IEP   W+   +  +L + L     +  LK+Q+ ++G L ITG   +  
Sbjct: 5   MEGSQTHFYDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITGGCPVDQ 64

Query: 61  GKGLRFLKEIDIPADADSSKISAKLEKGILYVTQPR 95
            K +RF+KE  +  D   ++I AK  KG+LYVT P+
Sbjct: 65  TKTIRFMKETKVAKDCKRNEIRAKFSKGVLYVTMPK 100

[Close]
BLAST of Carg06129 vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +  +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. TAIR10
Match: AT5G37670.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 30/103 (29.13%), Postives = 48/103 (46.60%), Query Frame = 0 

Query: 15  INWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITG----------------ERRLTS 74
           I+W     SH+  + +  + + D+KVQ+     L I G                ER   S
Sbjct: 24  IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFS 83

Query: 75  GKGLRFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSS 102
           G G  FL+ I++P +    ++ A +E G+L V  P+ TS+ SS
Sbjct: 84  GGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSKSS 126

[Close]
BLAST of Carg06129 vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +K +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKKNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-07
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +  +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-07
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +  +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-07
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +  +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-07
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 8   FQDIEPQINWQHYPESHVLTVTLKDFTRNDLKV-QVTSTGKLRITGERRLTSGKGLRFLK 67
           ++D  P+  W+  PE+ +L + L  F +  +KV  V S+  +R+TGER L + K  RF +
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNE 75

Query: 68  EIDIPADADSSKISAKLEKGILYVTQPRKT 97
              +P +    KI    +  +L +T P++T
Sbjct: 76  VFTVPQNCLVDKIHGSFKNNVLTITMPKET 105

[Close]
BLAST of Carg06129 vs. TrEMBL
Match: tr|A0A1S3BQ02|A0A1S3BQ02_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.8e-33
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           SS+KNFQ+ EP+ +W H+P+SHVL V L  F  N LKVQVTSTGKLR++GER+L +GK L
Sbjct: 5   SSAKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQP 110
           RF KEIDIPADAD+ KISAKLE+GILYV QP+K SA SSN PP QQP
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQP 111

[Close]
BLAST of Carg06129 vs. TrEMBL
Match: tr|A0A1S3BRB0|A0A1S3BRB0_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC103492432 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.4e-32
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           SS+KNF++ EP+ +W H+P+SHVL V L  F  N LKVQVTSTGKLR++GER+L +GK L
Sbjct: 5   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWL 64

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQP 110
           RF KEIDIPADAD+ KISAKLE+GILYV QP+K    SSN PP QQP
Sbjct: 65  RFEKEIDIPADADTDKISAKLEEGILYVKQPKKLPTTSSNIPPVQQP 111

[Close]
BLAST of Carg06129 vs. TrEMBL
Match: tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           SS+KNF++ EP+ +W H+P+SHVL V L DF  N L+VQVTSTGKLR++G+R L++G  L
Sbjct: 7   SSAKNFEEFEPRFDWVHHPDSHVLVVHLSDFKSNQLEVQVTSTGKLRVSGDRMLSNGTWL 66

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQ 109
           RF KEIDIPADAD+ KISAKLE+GILYV QP+K SA SSN PP QQ
Sbjct: 67  RFEKEIDIPADADTDKISAKLEQGILYVKQPKKPSATSSNIPPVQQ 112

[Close]
BLAST of Carg06129 vs. TrEMBL
Match: tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           SS+K F++ EP+ +W  +P++ VL V L  F  N LKVQVTSTGKLR++GER+L+SGK L
Sbjct: 5   SSAKKFEEFEPRFDWVDHPDARVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLSSGKWL 64

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQP 110
           RF KEIDIPADAD+  ISAKLE+G+LYV QP+K SA SSN PP QQP
Sbjct: 65  RFQKEIDIPADADTDNISAKLEQGVLYVKQPKKPSATSSNIPPVQQP 111

[Close]
BLAST of Carg06129 vs. TrEMBL
Match: tr|A0A2P5FUG4|A0A2P5FUG4_9ROSA (Small heat shock protein HSP OS=Trema orientalis OX=63057 GN=TorRG33x02_027490 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-13
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 3   SSSKNFQDIEPQINWQHYPESHVLTVTLKDFTRNDLKVQVTSTGKLRITGERRLTSGKGL 62
           +S+K+++D EP + W     S  L V L  F +  LK+Q+TS GKLRI GER +   K  
Sbjct: 13  ASAKDYEDFEPPLEWVKEEGSDTLLVFLPGFQKERLKIQITSNGKLRIVGERPIGQNKWR 72

Query: 63  RFLKEIDIPADADSSKISAKLEKGILYVTQPRKTSAVSSNNPPAQQ 109
           RF KE  + +D D+SKISAK E GILYV    K   V+    P QQ
Sbjct: 73  RFQKEFPLASDCDTSKISAKFEGGILYV----KPETVAPKPKPKQQ 114

The following BLAST results are available for this feature:
BLAST of Carg06129 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960894.12.7e-8191.70uncharacterized protein LOC111461557 [Cucurbita moschata][more]
XP_023533466.16.4e-5977.78nucleoporin NUP159-like [Cucurbita pepo subsp. pepo][more]
XP_022988169.17.3e-3949.85inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita maxima][more]
XP_022960896.13.8e-3574.77inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata][more]
XP_008451028.12.7e-3370.09PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Cucumis ... [more]
BLAST of Carg06129 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20970.17.6e-1436.73HSP20-like chaperones superfamily protein[more]
AT2G27140.19.3e-1239.13HSP20-like chaperones superfamily protein[more]
AT1G54400.11.5e-0935.42HSP20-like chaperones superfamily protein[more]
AT5G04890.13.7e-0831.11HSP20-like chaperones superfamily protein[more]
AT5G37670.11.8e-0729.13HSP20-like chaperones superfamily protein[more]
BLAST of Carg06129 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|D9UC01|RTM2D_ARATH2.3e-0732.22Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UBX6|RTM2B_ARATH6.6e-0731.11Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|D9UBX4|RTM2C_ARATH6.6e-0731.11Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
sp|Q9M670|RTM2_ARATH6.6e-0731.11Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S... [more]
sp|D5K211|RTM2A_ARATH8.6e-0731.11Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
BLAST of Carg06129 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQ02|A0A1S3BQ02_CUCME1.8e-3370.09pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3... [more]
tr|A0A1S3BRB0|A0A1S3BRB0_CUCME4.4e-3267.29inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA1.3e-3166.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1[more]
tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA3.1e-3064.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1[more]
tr|A0A2P5FUG4|A0A2P5FUG4_9ROSA1.6e-1345.28Small heat shock protein HSP OS=Trema orientalis OX=63057 GN=TorRG33x02_027490 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002068A-crystallin/Hsp20_dom
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06129-RACarg06129-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 1..99
e-value: 8.3E-16
score: 59.8
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 8..97
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 19..98
e-value: 3.7E-9
score: 36.5
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 6..109
score: 16.256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..148
NoneNo IPR availablePANTHERPTHR43670:SF16ALPHA-CRYSTALLIN DOMAIN OF HEAT SHOCK PROTEIN-CONTAINING PROTEINcoord: 6..206
NoneNo IPR availablePANTHERPTHR43670FAMILY NOT NAMEDcoord: 6..206
NoneNo IPR availableCDDcd00298ACD_sHsps_p23-likecoord: 21..91
e-value: 8.13046E-13
score: 61.0659