CsaV3_1G041730 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCATGGATCCTTCTTCTTCTGCTAAAAACTTCGAGAAATTTGAGCCGCGATTTGATTGGGTTGATCATCCTGATTCTCATGTTCTCGTCGTTCACCTCTCAGGTTTCATCATATTCCCCCTAAGTTCATTTCAGTTTTAATTTTAACGTACATAGGGATTGGGAAATGGAAATTTAACTTTTAATTACACTCTCAATTATAAAGTTCGAAAGTCTAATTTTAATAATAACTAAGTTTTAAAGGTATAATTAGGGTATTAGAAAAAATTAAACACTACATTTTAAATGAGTGTTACATTTTAGGCAAAATTTTAAAATAATTACCATTTTAATTTTTGGTAGATTTTCACTTCCCATTTCTTGTGCCTTTAAAAGGCAACAAAAATCACTCAAACAAAAATTAACTCCAACACAAATATATTTGTGATAGTTGCAAATTTAGCGATTAAATTTAAAATAATTAAATATACAACAACATTTTTAAAAAATTGCAAATATAGTAAAATTTGTCAAATTTTATCAATGATAGAGTCTATCACGGATAGACGACCATGTTATAAAAATTAACATTCTATCACACGAGTCTATGAGTGATACAAGCCTAAATTTTTATGAGAAAACGGATGAAAATATTTATAAAATAGGATTTTCTAAAAAAATATATATCACACGTCTATGAGTGATACAAGCCTAAATTTTTATGAGAAAACGGATGAAAATATTTATAAAATAGGATTTTCTAAAAAAATATAAATAGTATATAGGAATTTAGATTTAGCTCATTTTTTTCAACATTTTTTTCAAGTAGAGTGAGAGAAAAAGACTAGAGAAGAAAAGAATGAAAAGAGACAAATCTATAATATTTTTTCTAAAAAAAGCTTGCCCATTTTTATTTTGTTATACTATTCTAAATATTTTCTGTATTTTCTTAATTAATAGATCGATAAAATATAAATTTATCATAGGTAGAATTTATTTTTTATATATATTTTTTTATTTATGAATATTATATCTGAAAATGTCCCAAGAAATAAAAATAAAAAATCACAAGGTTATACTTGTAATTACATTTTAAATAAAATAAAATTGTGGAAAACTGGCTGTAAGTGTGTTAGGGGTATTCTCGTCCATCAAAGTTATTTTTATTTTTTTACCTTCCAAAGGTTTCAGTAGCAACCAACTGAAAGTTCAGGTAACGTCCACCGGTAAGCTGAGAGTCTCCGGCGATCGGCAGCTCATTAACGGCAAGTGGCTTCGATTCCAAAAGGAAATCGATATCCCCGCCGACGCAGACACCGATAATATCTCTGCCAAATTGGAGCATGGCATTCTCTACGTGAAACAGCCCAAGAAACCCTCCGCCACCTCCTCCAACATCCCACCGGTTCAGCAACCCAAGCCCAAGGCTGAATCCCAACCGCCGCCCGCCGCCACAAAACCCACTGCTGACCCACCAAATGTTCGACCAAATGCTCCAAAGAGCCAAAACGAAAGACCCGAGCCTCCAGAGTCCGCTGCTACAGAACCCACTGTCGCCCCACCAACTGTTCGACCAAATGCCCGAAAGAGACTAGACGAAACAGTCGACACTGCATTCTATCCTGGCACAAAAACCTATCTCAAAATCGTCCCAAAGAGCGAAGACGGAATAGCCAAGCAATCAATCAATCCCAAAAAATACCATGCCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAATGAGAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGGGGCAACCGGAGCACCCGCGAGGATCCCAAAACCCGGCGAGACATCCTCCATAGGCAGTGGACAGCCAGTTGAAGATTTAGCTAAGAAGGACAAAACAAAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAGAAGACAAGAGAAGACGGTAAAGAAGAAGAAGGTGGGTCAAAAATGGCAGAGAAGGAGAAAGAAGAAGTTGGAATAGCCAAGCCATCAATCGATGCCAAAAAGTTCCATGTCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAACGACAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGAAGCAACCGGAGCACCCGCGAGTATCCCAAAACCCGGCGAGACATCCTCCATGGGCAGTGGACAGCCAATTGAAGATTTAGCTAAGGAGGACAAAACAGAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAAAAGACAAGTGAAGAAGGTGGGTCAAAAATGGCGGAGAAGGAGAAAGAAGAAGTTGAAAAAGAGAAGAGGAGGAGGATGAAGAGAATGATTGAGGAAATGGGAGAAGAGAGTGGAAGGTTGAGAAGAAGAGAAAGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTAAGGACAAATATGGTGACTTTGGCTTTGGGGGTTGCTGTCTTTGGGATTTTGTATCTGAATCTTTCAAAGAAGGGTCATGTGGAGGAAGAGTTGTGA ATGGCCATGGATCCTTCTTCTTCTGCTAAAAACTTCGAGAAATTTGAGCCGCGATTTGATTGGGTTGATCATCCTGATTCTCATGTTCTCGTCGTTCACCTCTCAGGTTTCAGTAGCAACCAACTGAAAGTTCAGGTAACGTCCACCGGTAAGCTGAGAGTCTCCGGCGATCGGCAGCTCATTAACGGCAAGTGGCTTCGATTCCAAAAGGAAATCGATATCCCCGCCGACGCAGACACCGATAATATCTCTGCCAAATTGGAGCATGGCATTCTCTACGTGAAACAGCCCAAGAAACCCTCCGCCACCTCCTCCAACATCCCACCGGTTCAGCAACCCAAGCCCAAGGCTGAATCCCAACCGCCGCCCGCCGCCACAAAACCCACTGCTGACCCACCAAATGTTCGACCAAATGCTCCAAAGAGCCAAAACGAAAGACCCGAGCCTCCAGAGTCCGCTGCTACAGAACCCACTGTCGCCCCACCAACTGTTCGACCAAATGCCCGAAAGAGACTAGACGAAACAGTCGACACTGCATTCTATCCTGGCACAAAAACCTATCTCAAAATCGTCCCAAAGAGCGAAGACGGAATAGCCAAGCAATCAATCAATCCCAAAAAATACCATGCCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAATGAGAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGGGGCAACCGGAGCACCCGCGAGGATCCCAAAACCCGGCGAGACATCCTCCATAGGCAGTGGACAGCCAGTTGAAGATTTAGCTAAGAAGGACAAAACAAAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAGAAGACAAGAGAAGACGGTAAAGAAGAAGAAGGTGGGTCAAAAATGGCAGAGAAGGAGAAAGAAGAAGTTGGAATAGCCAAGCCATCAATCGATGCCAAAAAGTTCCATGTCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAACGACAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGAAGCAACCGGAGCACCCGCGAGTATCCCAAAACCCGGCGAGACATCCTCCATGGGCAGTGGACAGCCAATTGAAGATTTAGCTAAGGAGGACAAAACAGAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAAAAGACAAGTGAAGAAGGTGGGTCAAAAATGGCGGAGAAGGAGAAAGAAGAAGTTGAAAAAGAGAAGAGGAGGAGGATGAAGAGAATGATTGAGGAAATGGGAGAAGAGAGTGGAAGGTTGAGAAGAAGAGAAAGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTAAGGACAAATATGGTGACTTTGGCTTTGGGGGTTGCTGTCTTTGGGATTTTGTATCTGAATCTTTCAAAGAAGGGTCATGTGGAGGAAGAGTTGTGA ATGGCCATGGATCCTTCTTCTTCTGCTAAAAACTTCGAGAAATTTGAGCCGCGATTTGATTGGGTTGATCATCCTGATTCTCATGTTCTCGTCGTTCACCTCTCAGGTTTCAGTAGCAACCAACTGAAAGTTCAGGTAACGTCCACCGGTAAGCTGAGAGTCTCCGGCGATCGGCAGCTCATTAACGGCAAGTGGCTTCGATTCCAAAAGGAAATCGATATCCCCGCCGACGCAGACACCGATAATATCTCTGCCAAATTGGAGCATGGCATTCTCTACGTGAAACAGCCCAAGAAACCCTCCGCCACCTCCTCCAACATCCCACCGGTTCAGCAACCCAAGCCCAAGGCTGAATCCCAACCGCCGCCCGCCGCCACAAAACCCACTGCTGACCCACCAAATGTTCGACCAAATGCTCCAAAGAGCCAAAACGAAAGACCCGAGCCTCCAGAGTCCGCTGCTACAGAACCCACTGTCGCCCCACCAACTGTTCGACCAAATGCCCGAAAGAGACTAGACGAAACAGTCGACACTGCATTCTATCCTGGCACAAAAACCTATCTCAAAATCGTCCCAAAGAGCGAAGACGGAATAGCCAAGCAATCAATCAATCCCAAAAAATACCATGCCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAATGAGAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGGGGCAACCGGAGCACCCGCGAGGATCCCAAAACCCGGCGAGACATCCTCCATAGGCAGTGGACAGCCAGTTGAAGATTTAGCTAAGAAGGACAAAACAAAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAGAAGACAAGAGAAGACGGTAAAGAAGAAGAAGGTGGGTCAAAAATGGCAGAGAAGGAGAAAGAAGAAGTTGGAATAGCCAAGCCATCAATCGATGCCAAAAAGTTCCATGTCCCACGAAGTGTTGGAGCAAATCCCCCAAAGAGCCAAAACGACAGGCCTCAATCACAAGCAAGTGGGAAACAAATCCCCACTCCTCCAAAGCCACAGGAAGCAACCGGAGCACCCGCGAGTATCCCAAAACCCGGCGAGACATCCTCCATGGGCAGTGGACAGCCAATTGAAGATTTAGCTAAGGAGGACAAAACAGAGGAGAAGGGGAAAGCACATACAAAACTACAGGATGCTTTGGAAAAGACAAGTGAAGAAGGTGGGTCAAAAATGGCGGAGAAGGAGAAAGAAGAAGTTGAAAAAGAGAAGAGGAGGAGGATGAAGAGAATGATTGAGGAAATGGGAGAAGAGAGTGGAAGGTTGAGAAGAAGAGAAAGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTAAGGACAAATATGGTGACTTTGGCTTTGGGGGTTGCTGTCTTTGGGATTTTGTATCTGAATCTTTCAAAGAAGGGTCATGTGGAGGAAGAGTTGTGA MAMDPSSSAKNFEKFEPRFDWVDHPDSHVLVVHLSGFSSNQLKVQVTSTGKLRVSGDRQLINGKWLRFQKEIDIPADADTDNISAKLEHGILYVKQPKKPSATSSNIPPVQQPKPKAESQPPPAATKPTADPPNVRPNAPKSQNERPEPPESAATEPTVAPPTVRPNARKRLDETVDTAFYPGTKTYLKIVPKSEDGIAKQSINPKKYHAPRSVGANPPKSQNERPQSQASGKQIPTPPKPQGATGAPARIPKPGETSSIGSGQPVEDLAKKDKTKEKGKAHTKLQDALEKTREDGKEEEGGSKMAEKEKEEVGIAKPSIDAKKFHVPRSVGANPPKSQNDRPQSQASGKQIPTPPKPQEATGAPASIPKPGETSSMGSGQPIEDLAKEDKTEEKGKAHTKLQDALEKTSEEGGSKMAEKEKEEVEKEKRRRMKRMIEEMGEESGRLRRRERYKQVIDGVVKELRTNMVTLALGVAVFGILYLNLSKKGHVEEEL
BLAST of CsaV3_1G041730 vs. NCBI nr
Match: KGN66368.1 (hypothetical protein Csa_1G600080 [Cucumis sativus]) HSP 1 Score: 431.0 bits (1107), Expect = 5.4e-117 Identity = 351/495 (70.91%), Postives = 353/495 (71.31%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. NCBI nr
Match: KGN66370.1 (hypothetical protein Csa_1G600100 [Cucumis sativus]) HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92 Identity = 202/292 (69.18%), Postives = 217/292 (74.32%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. NCBI nr
Match: XP_011648542.1 (PREDICTED: protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus]) HSP 1 Score: 348.2 bits (892), Expect = 4.6e-92 Identity = 201/291 (69.07%), Postives = 216/291 (74.23%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. NCBI nr
Match: XP_004144143.2 (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis sativus] >KGN66371.1 hypothetical protein Csa_1G600110 [Cucumis sativus]) HSP 1 Score: 310.8 bits (795), Expect = 8.1e-81 Identity = 193/290 (66.55%), Postives = 207/290 (71.38%), Query Frame = 0
HSP 2 Score: 108.6 bits (270), Expect = 6.1e-20 Identity = 115/164 (70.12%), Postives = 124/164 (75.61%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. NCBI nr
Match: XP_008451025.1 (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 3.7e-73 Identity = 203/288 (70.49%), Postives = 211/288 (73.26%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 84.0 bits (206), Expect = 2.9e-16 Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 83.6 bits (205), Expect = 3.8e-16 Identity = 48/124 (38.71%), Postives = 68/124 (54.84%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 69.3 bits (168), Expect = 7.5e-12 Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TAIR10
Match: AT1G54400.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 60.8 bits (146), Expect = 2.7e-09 Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TAIR10
Match: AT5G12020.1 (17.6 kDa class II heat shock protein) HSP 1 Score: 55.8 bits (133), Expect = 8.5e-08 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.3e-10 Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.3e-10 Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.3e-10 Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.8e-10 Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 3.0e-10 Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TrEMBL
Match: tr|A0A0A0LX62|A0A0A0LX62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600080 PE=4 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 3.6e-117 Identity = 351/495 (70.91%), Postives = 353/495 (71.31%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TrEMBL
Match: tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 8.0e-93 Identity = 202/292 (69.18%), Postives = 217/292 (74.32%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TrEMBL
Match: tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 5.4e-81 Identity = 193/290 (66.55%), Postives = 207/290 (71.38%), Query Frame = 0
HSP 2 Score: 108.6 bits (270), Expect = 4.1e-20 Identity = 115/164 (70.12%), Postives = 124/164 (75.61%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TrEMBL
Match: tr|A0A1S3BRB0|A0A1S3BRB0_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC103492432 PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 2.4e-73 Identity = 203/288 (70.49%), Postives = 211/288 (73.26%), Query Frame = 0
BLAST of CsaV3_1G041730 vs. TrEMBL
Match: tr|A0A1S3BQ02|A0A1S3BQ02_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 5.4e-73 Identity = 203/290 (70.00%), Postives = 215/290 (74.14%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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