Cp4.1LG05g04960 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g04960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nuclear transcription factor Y subunit A-1
Location	Cp4.1LG05 : 2909784 .. 2914087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATACGTGGCATGCGCTGCTGTCGATGCTTTAAAGAGGTGGTCCCCACATTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAAGTGCGTGTCACGTGGGTCAAAATATATTATCCCATTTCCCTCTTTTTATCCTGAAAAACAAATTTCCCTAACCTCACCCGTCCGTGATATTCCTTAGCTCACGACTCACGTCAACTGGGAACCTGCTTTACCCGGTTTTGCTCGTCTCAACTCAAAGGCGTCGACTTGGAAGAATCTCGTAGTTTGAAACTGGAAGGGGCGGTTGCTGGTGGAAGAGTAGCTGGAACTGAAGTCGGGTCCCGCAGTGGGTGAGGTAACAGTAGCCGTAGCTCTTGAATTTGAGCTGCCAGAAAAGGGTCTTTGTTTTTGCGCTCTAATTAACAGTGCTTTAATAAACTATGAGAATCGCTGAAGAACTTGATTGACTCTTCAATTTCTCTTCATCCCTTTCTGTTTTTCTTTATCTCGGAGATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTGAGTTCCTCTCTTTCCTCTTAACTTCATTTTGCGAGATTCTGTTTCCCTTCTCTCTTCTTTTCGATACCTAAAATTACTCTAGGGTTTTCTTAATTCGGTTCTTTTCCGTCTCTTCCCTTTGGTTTTTGTTTATGTTCGAGTATTGTTCTCGTTGCATGGAATTGGGCCAGCTTTGCTTTCTGGATTCATGCGACTAGGATATGGAAATTTGGATCACTAGAGTTCACTTGGTTGGTTTTCTTTGTTTAGAGAATAGAGTGGAATTAGGATCTCGATGGGAATTTAGAAGTTATGAGTTCGGGCGATTTTTGCTCATGTTTTTTCAAAAATGAACTCGCGCCGTCGTATTTTGTTGTTTTTGCTATCTATCCCACTTTTTTTTAGCATTGGGTTCTGTTTATTGTCTGCATGTGGGGATTATGGTTCGCGCAATCCTGAATTGCCGAATTCGGATTGTTTGAGTCAACTTGCGGCGCGGTCCTGAAAATTGTTTTTCTGTTTTCTTGTTTACTTTAGATGCCGTGCAAATTAGGTTGGAATGTCAGTCGTCTAGAAAACGAGCTGAATATTGAAGTGAACGTTATCTATATAACTCTTTTAGTTACCCCCTGCCCTTGCATGTGGATCACTGGTATACCCAGCTTAAATGTCAAAGAGAACTTATGTAGAGAGGGGAGAAGATTTTAATTTCAGATACTGAATTATGATTTGATAATTGTCTGGAGCGTTTATGGAGGGTTCATCAATATTATCCTGCAATTGATCTCCACTCAACATTACAGGAATTGGTTTATGTTTTGGATTAAAGATTATGGATGATCTTGGCTTTCTGTTTTTGAGTTTGTTAGATATGCTACACTTTTATCTCTTCAAAATTAAAAGTTTAGGAGTTCCAAGATGTGATTTAGCTGACGTAAATCGAGCATTCACGATTCCAAAATTCTTCAAGCACAAAATAGAAACTTATTTGGTTTCTGTCTTCCGAATCATAGAACCCAACAATTGATGTTAAGTTACCAGCTTAGCTGGGAAGGCCTGAAGATATTAAAGGTGTAGAGCATTTTGCTTTCGTAAGGTCATAAGCTTCATTCAAAAGAATAATGAGCAATGCTCTGTACAGGGATTGGATTAAGTTAAAGCATGCTCTGGGAAAGTTTCTTAGGTTTTTAAACGAACGATGCTTCCTTTTTCCCCGTTTCCTTTTAACATCTTCTTTTCAATTCTTTTATCACAGGGTGACGGCTGGTTCTCTGTTTATCCAACAATTTGTTTTGCATATTATGTGAATTCTAGGCGACTCCATTCTTTTATCTTTTCTAACGTATATATATTTGTTTAGAAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCCTCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGATGGCCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGATGACACCACGAAAGAAACACAAGGTATGGCCCTCAACTAGGCATTTTTACTGGCCAAATCATGCTATAGTTCAAAAAAAGGAGTTTATTGTTTTTAGCCTTTCTAGTTGTGAATTGGAATTATTGCACATAATCTTGGAAGCTGAGGATAATTTAACCTTATTGGATTGTTAACGAACATGTTATTATCAAATTCAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGTAAGCTTCTGCTATAGTCTTGTTGATTTCCTCCTTACCTTAGAGACATCCTTCTTGCTCTCGGAATCCAGTTTTTGAATATTGAACAAGATTGGTTCTTTGAAACGCATCAGATTTGAGATGCTTTTGAATTTTGTGGAATTACTAGTTTTTGTTGAATCTTTTTCAGGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGTATGTAGGTTAAAATTATAAAGATCAGGCGATGATATGAATATGCATATATATGTACATCTTACTGGTAATTTTTGCACCATATACACTAATTTTTAGCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATTCTAGCCCTGGGTAATTTTGATGGTACTTTTCCTTTCTGCCTCCTCCACTTTTATGTTTTTTCTTTTGCTTTTACCTTTTCAATTATCCAGGAACTTCATTATGTTCCTTGTCCAGATTTTCACTTTCTCAAACTATCGTAAGTAAAATAACATACGAGTATCTGGTGAACGCGAACTAATTGAAAATTTCCAGTTTTGTGGAAGAGATTCTAGAGTGATTATGCCTGTAAGTTTGCCCCTGACAAGTATTTCATATTGTAGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGGTACGATTGCTATTCAAAATTCAGATAGTTTTCTTTGATGTACTACGGCTTGTCTCTTATATATGTTTTAGGTATCTGGGTATCTGGGAATCTATAAAGACTTTCTTAATTGTACTTTATTTTTCTTGAAGTTCATTCTTCCATATGCTGCAAATTTGATTATAAATATTCGAAGGAGAGAAGTAACATATATAGACTGGAGGTCAACGGAAGGTATACCATAAATGGTATCCGTATATACAGCTGATTTAGATTCAAAGCTTTTAATTTTTGAACTCGGAGCCTTTGTTACATTTCATGTTGAGTGATGTGGTGACCGTGTATGGTCGACTCACTAATTTAAGTAGAATTCTACTGAGGCGAAGCAGGTCTTTCAAAATTTCACGATTTCTTTTTTGTTGTATGTAGTTCTTAATAGTTAGTTCATTACCCGTTGAGACAAATATGGCTTGGCTGACTTAGATTAGTTTTTGAATGCTCTATACTGGCCGGGTTAGATTTCAAAAATCAAATGTCATTGAGGGTTGGCTGGTTGTTAGTTCTGTATGTTTTCTGAAGTATCTCTAATATTTAGCTTGTGTGTAATGTTGATCAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

mRNA sequence

ATGGGATACATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

Coding sequence (CDS)

ATGGGATACATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

Protein sequence

MGYIPTVFFLNPALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEALASKLLHMLYSLAREVKMETARDSNEEVSQKIRPHRGVLQSNEPPGCENTGYPL

Homology

[Close]

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-45
Identity = 106/187 (56.68%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 76  NNQHAVSTAPR------------VHGGCITQPPQLELVGHSIACAS-NQYQDPYYAGLMA 135
           N +  V+T+P+            +H G    PP  +LVGH++  AS N YQDPYYAG+M 
Sbjct: 78  NKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMG 137

Query: 136 AYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV 195
           AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAKQYQ ILRRRQARAKAE+E KLIK 
Sbjct: 138 AYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS 197

Query: 196 RKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPG 250
           RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S  K++E  +G    S SS +     
Sbjct: 198 RKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASKRKAEEKSNGHVTQSPSSSN----S 257

[Close]

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-45
Identity = 110/195 (56.41%), Postives = 139/195 (71.28%), Query Frame = 1


Query: 61  SPSATGG-NVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAG 120
           S +AT   +V   G   N  A+S    +H   + QPP  ELVGH IAC  N YQDPYY G
Sbjct: 84  SQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGG 143

Query: 121 LMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKL 180
           LM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VNAKQY+GILRRR+ARAKAE+E K+
Sbjct: 144 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 203

Query: 181 IKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-LSSTMKSKESGSGQAISSSSSGSE 240
           I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++   +  + +E GS    +++SSGSE
Sbjct: 204 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERGS----ATNSSGSE 263

Query: 241 AVPGALAETWNSSNS 254
            V     ET NSS +
Sbjct: 264 QVETDSNETLNSSGA 271

[Close]

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-20
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1


Query: 103 HSIACASNQYQDPYYAGLMAAYGHQPMG-YPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 162
           +S+A     Y DPYY  + A       G +   +G+    + LP +  +EPVFVNAKQY 
Sbjct: 51  NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 163 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKSLSSTM 222
           GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG GGRF  AKK +     S+ 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 223 KSKES-GSGQAISSSSSGS 238
           + K +  +G++  ++SSG+
Sbjct: 171 EEKSNLSAGKSAMAASSGT 189

[Close]

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 86/247 (34.82%), Postives = 124/247 (50.20%), Query Frame = 1


Query: 12  PALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG 71
           PA++ S +        S    + ES    +   G Y   +  SI  N +S         G
Sbjct: 43  PAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKR-YGCSIVNNNLSGYIEN---LG 102

Query: 72  QGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACAS----NQYQDPYYAGLMAAYGHQ 131
           +   N   +++T+  V    +   P    +  S+ CA     N +  P YA    A  H 
Sbjct: 103 KPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHL 162

Query: 132 PMGYPPFIGMPHARMALPLEVAQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPY 191
            M     +G+  +R+ LP  + + EP+FVNAKQY  ILRRR+ RAK E +NKLIK RKPY
Sbjct: 163 EM-----MGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPY 222

Query: 192 LHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAE 251
           LHESRH HA++RARG+GGRF    + +  S+++ S +  +GQ  S S  G  +  G+ + 
Sbjct: 223 LHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS-SS 279

Query: 252 TWNSSNS 254
              SSNS
Sbjct: 283 ISPSSNS 279

[Close]

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-20
Identity = 74/197 (37.56%), Postives = 101/197 (51.27%), Query Frame = 1


Query: 68  NVYGQGQHNNQHAVS------TAPRVHGGCITQPPQLELV-GHSIACASNQYQDPYYAGL 127
           +V+    +N  HA        T P+V  G  ++      V    +A     Y DPYY  +
Sbjct: 4   SVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLYPYPDPYYRSV 63

Query: 128 MAAYGHQPMGYP----PFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVE 187
            A   + P  YP      +GM    + L  +  +EPVFVNAKQY GILRRRQ+RAK E  
Sbjct: 64  FAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEAR 123

Query: 188 NKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSG 247
           N+ IK +KPY+HESRH HA+RR RG GGRF   N  K      + +E+ S +  S +SS 
Sbjct: 124 NRAIKAKKPYMHESRHLHAIRRPRGCGGRFL--NAKKENGDHKEEEEATSDENTSEASSS 183

Query: 248 SEAVPGALAETWNSSNS 254
             +   A+A +  +  S
Sbjct: 184 LRSEKLAMATSGPNGRS 198

[Close]

BLAST of Cp4.1LG05g04960 vs. TrEMBL
Match: A0A0A0KEL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439960 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 192/288 (66.67%), Postives = 208/288 (72.22%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPN----------------------------------MQQTGSYSE 83
           MQ KSKSVNQ+ESEPPN                                  ++ T   SE
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  PW-WRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              +GQ QHN QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960 vs. TrEMBL
Match: M5WIA6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006634mg PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76
Identity = 166/286 (58.04%), Postives = 186/286 (65.03%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG------------ 83
           MQ KS++ N++ ++   +     YSEPWWR +GYNPISP+ TG N               
Sbjct: 1   MQSKSETENRLHADHHTIPPNSVYSEPWWRGVGYNPISPAVTGRNASNSSSLECPNGGSE 60

Query: 84  ------------------------------------QGQHNNQHAVSTAPRVHGGCITQP 143
                                               Q + N  H  ST P V   C+ QP
Sbjct: 61  SNDDRSLSNDEPNEDDDDDATKESQITSPRSAGNDGQERQNMPHVGSTVPTVRDDCLAQP 120

Query: 144 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 203
           PQLELVGHSIACASN YQDPYYAG+MAAYGHQP+GYPPF+GMPHARM LPLE+AQEPV+V
Sbjct: 121 PQLELVGHSIACASNPYQDPYYAGMMAAYGHQPLGYPPFLGMPHARMPLPLEMAQEPVYV 180

Query: 204 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSL 259
           NAKQYQGILRRRQARAKAE+E KLIKVRKPYLHESRHQHAMRRARGTGGRFAKK      
Sbjct: 181 NAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTNGDKS 240

[Close]

BLAST of Cp4.1LG05g04960 vs. TrEMBL
Match: A0A061GTI4_THECC (Nuclear transcription factor Y subunit A-9, putative OS=Theobroma cacao GN=TCM_040712 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.7e-69
Identity = 163/283 (57.60%), Postives = 198/283 (69.96%), Query Frame = 1


Query: 2   GYIPTVFFLNPALRIS--SIFSPGMQFKSKSVNQVESEPPNMQQT--------GSYSEPW 61
           G  PT  +  P  R    S  SPG++  + S N    E PN  ++        G  +E  
Sbjct: 17  GVPPTAVYSEPWWRNIGYSAISPGVRGGNTS-NSSSMECPNGSESNDGQSLSNGGVNEED 76

Query: 62  WRSIGYNPISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQ 121
             +      + S + GN  GQ  HN QH  ST P +H  C+TQPPQLELVGHSIACA+N 
Sbjct: 77  DGNKETQTTASSRSVGNG-GQEHHNLQHVASTMPAMHDECLTQPPQLELVGHSIACAANP 136

Query: 122 YQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARA 181
           YQDP+Y G+MAAYGHQP+GYPPF+GMPHARMALP+E+AQEPV+VNAKQYQGILRRRQARA
Sbjct: 137 YQDPFYGGMMAAYGHQPLGYPPFVGMPHARMALPIEMAQEPVYVNAKQYQGILRRRQARA 196

Query: 182 KAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAIS 241
           KAE+E K++KVRKPYLHESRHQHAMRRARG+GGRFAKK++A +       K +GSG A+S
Sbjct: 197 KAELEKKVVKVRKPYLHESRHQHAMRRARGSGGRFAKKSDADT-----SRKGTGSGPALS 256

Query: 242 S---SSSGSEAVPGALAETWNSSNSQQEAR-AQLHESYEALAS 271
           S   SSSGSE +P   AETWNSS SQQEAR +Q+H+++    S
Sbjct: 257 SQSASSSGSEPLPADSAETWNSSLSQQEARGSQVHDTHHVNGS 292

[Close]

BLAST of Cp4.1LG05g04960 vs. TrEMBL
Match: A0A0B2REF6_GLYSO (Nuclear transcription factor Y subunit A-1 OS=Glycine soja GN=glysoja_022585 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 142/213 (66.67%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 59  PISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYA 118
           P +P+ TG   YGQ Q   QH  S+AP +   C+TQ PQLELVGHSIACA+N YQDPYY 
Sbjct: 86  PAAPNGTGN--YGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYG 145

Query: 119 GLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENK 178
           G+MAAYGHQ +GY PFIGMPHARM LPLE+AQEPV+VNAKQYQGILRRRQARAKAE+E K
Sbjct: 146 GMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERK 205

Query: 179 LIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISS---SSS 238
           LIK RKPYLHESRHQHAMRRARGTGGRFAKK + +  + + K K++G+   +SS   SSS
Sbjct: 206 LIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSS 265

Query: 239 GSEAVPGALAETWNSSNSQQEARA-QLHESYEA 268
           GSE +    AETWNS N QQ+ARA ++H  ++A
Sbjct: 266 GSEPLHSDSAETWNSPNMQQDARASKVHNRFKA 296

[Close]

BLAST of Cp4.1LG05g04960 vs. TrEMBL
Match: K7MQE5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G071000 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 142/213 (66.67%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 59  PISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYA 118
           P +P+ TG   YGQ Q   QH  S+AP +   C+TQ PQLELVGHSIACA+N YQDPYY 
Sbjct: 86  PAAPNGTGN--YGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYG 145

Query: 119 GLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENK 178
           G+MAAYGHQ +GY PFIGMPHARM LPLE+AQEPV+VNAKQYQGILRRRQARAKAE+E K
Sbjct: 146 GMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERK 205

Query: 179 LIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISS---SSS 238
           LIK RKPYLHESRHQHAMRRARGTGGRFAKK + +  + + K K++G+   +SS   SSS
Sbjct: 206 LIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSS 265

Query: 239 GSEAVPGALAETWNSSNSQQEARA-QLHESYEA 268
           GSE +    AETWNS N QQ+ARA ++H  ++A
Sbjct: 266 GSEPLHSDSAETWNSPNMQQDARASKVHNRFKA 296

[Close]

BLAST of Cp4.1LG05g04960 vs. TAIR10
Match: AT3G20910.1 (AT3G20910.1 nuclear factor Y, subunit A9)

HSP 1 Score: 184.9 bits (468), Expect = 7.9e-47
Identity = 106/187 (56.68%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 76  NNQHAVSTAPR------------VHGGCITQPPQLELVGHSIACAS-NQYQDPYYAGLMA 135
           N +  V+T+P+            +H G    PP  +LVGH++  AS N YQDPYYAG+M 
Sbjct: 78  NKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMG 137

Query: 136 AYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV 195
           AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAKQYQ ILRRRQARAKAE+E KLIK 
Sbjct: 138 AYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS 197

Query: 196 RKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPG 250
           RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S  K++E  +G    S SS +     
Sbjct: 198 RKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASKRKAEEKSNGHVTQSPSSSN----S 257

[Close]

BLAST of Cp4.1LG05g04960 vs. TAIR10
Match: AT5G12840.1 (AT5G12840.1 nuclear factor Y, subunit A1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-46
Identity = 110/195 (56.41%), Postives = 139/195 (71.28%), Query Frame = 1


Query: 61  SPSATGG-NVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAG 120
           S +AT   +V   G   N  A+S    +H   + QPP  ELVGH IAC  N YQDPYY G
Sbjct: 84  SQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGG 143

Query: 121 LMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKL 180
           LM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VNAKQY+GILRRR+ARAKAE+E K+
Sbjct: 144 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 203

Query: 181 IKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-LSSTMKSKESGSGQAISSSSSGSE 240
           I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++   +  + +E GS    +++SSGSE
Sbjct: 204 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERGS----ATNSSGSE 263

Query: 241 AVPGALAETWNSSNS 254
            V     ET NSS +
Sbjct: 264 QVETDSNETLNSSGA 271

[Close]

BLAST of Cp4.1LG05g04960 vs. TAIR10
Match: AT1G30500.2 (AT1G30500.2 nuclear factor Y, subunit A7)

HSP 1 Score: 101.7 bits (252), Expect = 8.8e-22
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1


Query: 103 HSIACASNQYQDPYYAGLMAAYGHQPMG-YPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 162
           +S+A     Y DPYY  + A       G +   +G+    + LP +  +EPVFVNAKQY 
Sbjct: 51  NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 163 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKSLSSTM 222
           GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG GGRF  AKK +     S+ 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 223 KSKES-GSGQAISSSSSGS 238
           + K +  +G++  ++SSG+
Sbjct: 171 EEKSNLSAGKSAMAASSGT 189

[Close]

BLAST of Cp4.1LG05g04960 vs. TAIR10
Match: AT1G54160.1 (AT1G54160.1 nuclear factor Y, subunit A5)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 86/247 (34.82%), Postives = 124/247 (50.20%), Query Frame = 1


Query: 12  PALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG 71
           PA++ S +        S    + ES    +   G Y   +  SI  N +S         G
Sbjct: 43  PAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKR-YGCSIVNNNLSGYIEN---LG 102

Query: 72  QGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACAS----NQYQDPYYAGLMAAYGHQ 131
           +   N   +++T+  V    +   P    +  S+ CA     N +  P YA    A  H 
Sbjct: 103 KPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHL 162

Query: 132 PMGYPPFIGMPHARMALPLEVAQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPY 191
            M     +G+  +R+ LP  + + EP+FVNAKQY  ILRRR+ RAK E +NKLIK RKPY
Sbjct: 163 EM-----MGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPY 222

Query: 192 LHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAE 251
           LHESRH HA++RARG+GGRF    + +  S+++ S +  +GQ  S S  G  +  G+ + 
Sbjct: 223 LHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS-SS 279

Query: 252 TWNSSNS 254
              SSNS
Sbjct: 283 ISPSSNS 279

[Close]

BLAST of Cp4.1LG05g04960 vs. TAIR10
Match: AT2G34720.1 (AT2G34720.1 nuclear factor Y, subunit A4)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-21
Identity = 74/197 (37.56%), Postives = 101/197 (51.27%), Query Frame = 1


Query: 68  NVYGQGQHNNQHAVS------TAPRVHGGCITQPPQLELV-GHSIACASNQYQDPYYAGL 127
           +V+    +N  HA        T P+V  G  ++      V    +A     Y DPYY  +
Sbjct: 4   SVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLYPYPDPYYRSV 63

Query: 128 MAAYGHQPMGYP----PFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVE 187
            A   + P  YP      +GM    + L  +  +EPVFVNAKQY GILRRRQ+RAK E  
Sbjct: 64  FAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEAR 123

Query: 188 NKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSG 247
           N+ IK +KPY+HESRH HA+RR RG GGRF   N  K      + +E+ S +  S +SS 
Sbjct: 124 NRAIKAKKPYMHESRHLHAIRRPRGCGGRFL--NAKKENGDHKEEEEATSDENTSEASSS 183

Query: 248 SEAVPGALAETWNSSNS 254
             +   A+A +  +  S
Sbjct: 184 LRSEKLAMATSGPNGRS 198

[Close]

BLAST of Cp4.1LG05g04960 vs. NCBI nr
Match: gi|659097589|ref|XP_008449707.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 1.0e-88
Identity = 196/288 (68.06%), Postives = 207/288 (71.88%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSY-----------------------------------S 83
           MQ KSKSVNQ ESEPPNMQQT SY                                    
Sbjct: 1   MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  EPWWRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              YGQ Q+N QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGSEA   ALAETWNSSN QQEAR QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960 vs. NCBI nr
Match: gi|778717036|ref|XP_011657641.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86
Identity = 192/288 (66.67%), Postives = 208/288 (72.22%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPN----------------------------------MQQTGSYSE 83
           MQ KSKSVNQ+ESEPPN                                  ++ T   SE
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  PW-WRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              +GQ QHN QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960 vs. NCBI nr
Match: gi|778717041|ref|XP_011657643.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85
Identity = 190/284 (66.90%), Postives = 207/284 (72.89%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNV---------YGQGQ 83
           MQ KSKSVNQ+ESEPPNMQQT S+SEPWWRSIGYN ISP A GGNV          G  +
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  HNNQHAVS------------------TAPRVHGGCITQPPQLELVGHS----------IA 143
            N+  ++S                  +  +V   C        +V HS          +A
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIV-HSGCITQPPQLELA 120

Query: 144 CASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRR 203
           CASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQGILRR
Sbjct: 121 CASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRR 180

Query: 204 RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGS 263
           RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K+SGS
Sbjct: 181 RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGS 240

Query: 264 GQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           GQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 GQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 282

[Close]

BLAST of Cp4.1LG05g04960 vs. NCBI nr
Match: gi|659097595|ref|XP_008449710.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 7.6e-84
Identity = 191/288 (66.32%), Postives = 202/288 (70.14%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSY-----------------------------------S 83
           MQ KSKSVNQ ESEPPNMQQT SY                                    
Sbjct: 1   MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  EPWWRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              YGQ Q+N QHAVS AP VH GCITQPPQLEL  
Sbjct: 61  SNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLEL-- 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
              ACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 ---ACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGSEA   ALAETWNSSN QQEAR QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEA 282

[Close]

BLAST of Cp4.1LG05g04960 vs. NCBI nr
Match: gi|645241931|ref|XP_008227314.1| (PREDICTED: nuclear transcription factor Y subunit A-1 [Prunus mume])

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 169/296 (57.09%), Postives = 193/296 (65.20%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG------------ 83
           MQ KS++ N++ ++   +     YSEPWWR +GYNPISP+ TG N               
Sbjct: 1   MQSKSETENRLHADHHTIPPNSVYSEPWWRGVGYNPISPAVTGRNASNSSSLECPNGGSE 60

Query: 84  ------------------------------------QGQHNNQHAVSTAPRVHGGCITQP 143
                                               Q + N  H  ST P V   C+ QP
Sbjct: 61  SNDDRSLSNDEPNEDDDDDATKESQITSPRSAGNDGQERQNVPHVGSTVPTVRDDCLAQP 120

Query: 144 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 203
           PQLELVGHSIACASN YQDPYYAG+MA+YGHQP+GYPPF+GMPHARM LPLE+AQEPV+V
Sbjct: 121 PQLELVGHSIACASNPYQDPYYAGMMASYGHQPLGYPPFLGMPHARMPLPLEMAQEPVYV 180

Query: 204 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSL 263
           NAKQYQGILRRRQARAKAE+E KLIKVRKPYLHESRHQHAMRRARGTGGRFAKK      
Sbjct: 181 NAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTNGDKS 240

Query: 264 SSTMKSKESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEAR-AQLHESYEA 268
           +ST + K +GSG A SS   SSSGSE  P   AETWNSSNSQQE R +Q+H+ Y A
Sbjct: 241 NSTGQEKGTGSGPAHSSQSGSSSGSEPFPSDSAETWNSSNSQQEGRGSQVHDPYSA 296

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYA9_ARATH	1.4e-45	56.68	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2...	[more]
NFYA1_ARATH	4.1e-45	56.41	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2...	[more]
NFYA7_ARATH	1.6e-20	46.76	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2...	[more]
NFYA5_ARATH	2.0e-20	34.82	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2...	[more]
NFYA4_ARATH	7.7e-20	37.56	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2...	[more]

BLAST of Cp4.1LG05g04960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL9_CUCSA	1.5e-86	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439960 PE=4 SV=1	[more]
M5WIA6_PRUPE	1.1e-76	58.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006634mg PE=4 SV=1	[more]
A0A061GTI4_THECC	1.7e-69	57.60	Nuclear transcription factor Y subunit A-9, putative OS=Theobroma cacao GN=TCM_0...	[more]
A0A0B2REF6_GLYSO	4.5e-67	66.67	Nuclear transcription factor Y subunit A-1 OS=Glycine soja GN=glysoja_022585 PE=...	[more]
K7MQE5_SOYBN	4.5e-67	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_18G071000 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20910.1	7.9e-47	56.68	nuclear factor Y, subunit A9	[more]
AT5G12840.1	2.3e-46	56.41	nuclear factor Y, subunit A1	[more]
AT1G30500.2	8.8e-22	46.76	nuclear factor Y, subunit A7	[more]
AT1G54160.1	1.1e-21	34.82	nuclear factor Y, subunit A5	[more]
AT2G34720.1	4.4e-21	37.56	nuclear factor Y, subunit A4	[more]

BLAST of Cp4.1LG05g04960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097589\|ref\|XP_008449707.1\|	1.0e-88	68.06	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis m...	[more]
gi\|778717036\|ref\|XP_011657641.1\|	2.1e-86	66.67	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis s...	[more]
gi\|778717041\|ref\|XP_011657643.1\|	1.1e-85	66.90	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis s...	[more]
gi\|659097595\|ref\|XP_008449710.1\|	7.6e-84	66.32	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis m...	[more]
gi\|645241931\|ref\|XP_008227314.1\|	1.8e-77	57.09	PREDICTED: nuclear transcription factor Y subunit A-1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016602	CCAAT-binding factor complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR018362	CCAAT-binding_factor_CS
IPR001289	NFYA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048731	system development
biological_process	GO:0055046	microgametogenesis
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0010262	somatic embryogenesis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g04960.1	Cp4.1LG05g04960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 183..206 score: 1.3E-23coord: 152..174 score: 1.3
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 33..267 score: 1.2E
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 151..206 score: 9.1
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 148..209 score: 2.7
IPR001289	Nuclear transcription factor Y subunit A	PROFILE	PS51152	NFYA_HAP2_2	coord: 149..209 score: 36
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 154..174 scor
None	No IPR available	PANTHER	PTHR12632:SF14	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED	coord: 33..267 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g04960	Cucsa.124180	Cucumber (Gy14) v1	cgycpeB0319
Cp4.1LG05g04960	CmaCh20G000890	Cucurbita maxima (Rimu)	cmacpeB586
Cp4.1LG05g04960	CmaCh02G012530	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g04960	CmaCh10G009280	Cucurbita maxima (Rimu)	cmacpeB098
Cp4.1LG05g04960	CmaCh11G008480	Cucurbita maxima (Rimu)	cmacpeB158
Cp4.1LG05g04960	CmoCh11G008590	Cucurbita moschata (Rifu)	cmocpeB134
Cp4.1LG05g04960	CmoCh02G012930	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g04960	CmoCh10G009720	Cucurbita moschata (Rifu)	cmocpeB074
Cp4.1LG05g04960	CmoCh20G000920	Cucurbita moschata (Rifu)	cmocpeB535
Cp4.1LG05g04960	Cla008551	Watermelon (97103) v1	cpewmB723
Cp4.1LG05g04960	Csa7G428130	Cucumber (Chinese Long) v2	cpecuB768
Cp4.1LG05g04960	Csa6G439960	Cucumber (Chinese Long) v2	cpecuB742
Cp4.1LG05g04960	MELO3C014590	Melon (DHL92) v3.5.1	cpemeB696
Cp4.1LG05g04960	ClCG03G013220	Watermelon (Charleston Gray)	cpewcgB670
Cp4.1LG05g04960	ClCG02G023180	Watermelon (Charleston Gray)	cpewcgB644
Cp4.1LG05g04960	CSPI06G24180	Wild cucumber (PI 183967)	cpecpiB744
Cp4.1LG05g04960	Lsi06G005270	Bottle gourd (USVL1VR-Ls)	cpelsiB629
Cp4.1LG05g04960	Lsi10G010670	Bottle gourd (USVL1VR-Ls)	cpelsiB598
Cp4.1LG05g04960	MELO3C014590.2	Melon (DHL92) v3.6.1	cpemedB829
Cp4.1LG05g04960	MELO3C023554.2	Melon (DHL92) v3.6.1	cpemedB813
Cp4.1LG05g04960	CsaV3_6G039350	Cucumber (Chinese Long) v3	cpecucB0921
Cp4.1LG05g04960	CsaV3_7G031020	Cucumber (Chinese Long) v3	cpecucB0948
Cp4.1LG05g04960	Bhi09G000535	Wax gourd	cpewgoB0970
Cp4.1LG05g04960	Bhi10G000228	Wax gourd	cpewgoB0944
Cp4.1LG05g04960	CsGy6G023590	Cucumber (Gy14) v2	cgybcpeB845
Cp4.1LG05g04960	CsGy7G017580	Cucumber (Gy14) v2	cgybcpeB975
Cp4.1LG05g04960	Carg02706	Silver-seed gourd	carcpeB1283
Cp4.1LG05g04960	Carg16939	Silver-seed gourd	carcpeB0658
Cp4.1LG05g04960	Carg13440	Silver-seed gourd	carcpeB0635
Cp4.1LG05g04960	Carg17969	Silver-seed gourd	carcpeB0249
Cp4.1LG05g04960	Carg06900	Silver-seed gourd	carcpeB0741

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g04960	Cp4.1LG12g06840	Cucurbita pepo (Zucchini)	cpecpeB190
Cp4.1LG05g04960	Cp4.1LG16g08750	Cucurbita pepo (Zucchini)	cpecpeB310
Cp4.1LG05g04960	Cp4.1LG17g08050	Cucurbita pepo (Zucchini)	cpecpeB341
Cp4.1LG05g04960	Cp4.1LG18g01670	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG05g04960	Cp4.1LG04g12030	Cucurbita pepo (Zucchini)	cpecpeB493

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g04960	Wild cucumber (PI 183967)	cpecpiB705
Cp4.1LG05g04960	Cucumber (Chinese Long) v2	cpecuB703
Cp4.1LG05g04960	Cucumber (Gy14) v2	cgybcpeB137
Cp4.1LG05g04960	Cucumber (Chinese Long) v3	cpecucB0877
Cp4.1LG05g04960	Cucumber (Gy14) v1	cgycpeB0386