Cp4.1LG05g04960.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g04960.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nuclear transcription factor Y subunit A-1
Location	Cp4.1LG05 : 2909784 .. 2914087 (-)
Sequence length	963

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATACGTGGCATGCGCTGCTGTCGATGCTTTAAAGAGGTGGTCCCCACATTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAAGTGCGTGTCACGTGGGTCAAAATATATTATCCCATTTCCCTCTTTTTATCCTGAAAAACAAATTTCCCTAACCTCACCCGTCCGTGATATTCCTTAGCTCACGACTCACGTCAACTGGGAACCTGCTTTACCCGGTTTTGCTCGTCTCAACTCAAAGGCGTCGACTTGGAAGAATCTCGTAGTTTGAAACTGGAAGGGGCGGTTGCTGGTGGAAGAGTAGCTGGAACTGAAGTCGGGTCCCGCAGTGGGTGAGGTAACAGTAGCCGTAGCTCTTGAATTTGAGCTGCCAGAAAAGGGTCTTTGTTTTTGCGCTCTAATTAACAGTGCTTTAATAAACTATGAGAATCGCTGAAGAACTTGATTGACTCTTCAATTTCTCTTCATCCCTTTCTGTTTTTCTTTATCTCGGAGATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTGAGTTCCTCTCTTTCCTCTTAACTTCATTTTGCGAGATTCTGTTTCCCTTCTCTCTTCTTTTCGATACCTAAAATTACTCTAGGGTTTTCTTAATTCGGTTCTTTTCCGTCTCTTCCCTTTGGTTTTTGTTTATGTTCGAGTATTGTTCTCGTTGCATGGAATTGGGCCAGCTTTGCTTTCTGGATTCATGCGACTAGGATATGGAAATTTGGATCACTAGAGTTCACTTGGTTGGTTTTCTTTGTTTAGAGAATAGAGTGGAATTAGGATCTCGATGGGAATTTAGAAGTTATGAGTTCGGGCGATTTTTGCTCATGTTTTTTCAAAAATGAACTCGCGCCGTCGTATTTTGTTGTTTTTGCTATCTATCCCACTTTTTTTTAGCATTGGGTTCTGTTTATTGTCTGCATGTGGGGATTATGGTTCGCGCAATCCTGAATTGCCGAATTCGGATTGTTTGAGTCAACTTGCGGCGCGGTCCTGAAAATTGTTTTTCTGTTTTCTTGTTTACTTTAGATGCCGTGCAAATTAGGTTGGAATGTCAGTCGTCTAGAAAACGAGCTGAATATTGAAGTGAACGTTATCTATATAACTCTTTTAGTTACCCCCTGCCCTTGCATGTGGATCACTGGTATACCCAGCTTAAATGTCAAAGAGAACTTATGTAGAGAGGGGAGAAGATTTTAATTTCAGATACTGAATTATGATTTGATAATTGTCTGGAGCGTTTATGGAGGGTTCATCAATATTATCCTGCAATTGATCTCCACTCAACATTACAGGAATTGGTTTATGTTTTGGATTAAAGATTATGGATGATCTTGGCTTTCTGTTTTTGAGTTTGTTAGATATGCTACACTTTTATCTCTTCAAAATTAAAAGTTTAGGAGTTCCAAGATGTGATTTAGCTGACGTAAATCGAGCATTCACGATTCCAAAATTCTTCAAGCACAAAATAGAAACTTATTTGGTTTCTGTCTTCCGAATCATAGAACCCAACAATTGATGTTAAGTTACCAGCTTAGCTGGGAAGGCCTGAAGATATTAAAGGTGTAGAGCATTTTGCTTTCGTAAGGTCATAAGCTTCATTCAAAAGAATAATGAGCAATGCTCTGTACAGGGATTGGATTAAGTTAAAGCATGCTCTGGGAAAGTTTCTTAGGTTTTTAAACGAACGATGCTTCCTTTTTCCCCGTTTCCTTTTAACATCTTCTTTTCAATTCTTTTATCACAGGGTGACGGCTGGTTCTCTGTTTATCCAACAATTTGTTTTGCATATTATGTGAATTCTAGGCGACTCCATTCTTTTATCTTTTCTAACGTATATATATTTGTTTAGAAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCCTCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGATGGCCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGATGACACCACGAAAGAAACACAAGGTATGGCCCTCAACTAGGCATTTTTACTGGCCAAATCATGCTATAGTTCAAAAAAAGGAGTTTATTGTTTTTAGCCTTTCTAGTTGTGAATTGGAATTATTGCACATAATCTTGGAAGCTGAGGATAATTTAACCTTATTGGATTGTTAACGAACATGTTATTATCAAATTCAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGTAAGCTTCTGCTATAGTCTTGTTGATTTCCTCCTTACCTTAGAGACATCCTTCTTGCTCTCGGAATCCAGTTTTTGAATATTGAACAAGATTGGTTCTTTGAAACGCATCAGATTTGAGATGCTTTTGAATTTTGTGGAATTACTAGTTTTTGTTGAATCTTTTTCAGGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGTATGTAGGTTAAAATTATAAAGATCAGGCGATGATATGAATATGCATATATATGTACATCTTACTGGTAATTTTTGCACCATATACACTAATTTTTAGCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATTCTAGCCCTGGGTAATTTTGATGGTACTTTTCCTTTCTGCCTCCTCCACTTTTATGTTTTTTCTTTTGCTTTTACCTTTTCAATTATCCAGGAACTTCATTATGTTCCTTGTCCAGATTTTCACTTTCTCAAACTATCGTAAGTAAAATAACATACGAGTATCTGGTGAACGCGAACTAATTGAAAATTTCCAGTTTTGTGGAAGAGATTCTAGAGTGATTATGCCTGTAAGTTTGCCCCTGACAAGTATTTCATATTGTAGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGGTACGATTGCTATTCAAAATTCAGATAGTTTTCTTTGATGTACTACGGCTTGTCTCTTATATATGTTTTAGGTATCTGGGTATCTGGGAATCTATAAAGACTTTCTTAATTGTACTTTATTTTTCTTGAAGTTCATTCTTCCATATGCTGCAAATTTGATTATAAATATTCGAAGGAGAGAAGTAACATATATAGACTGGAGGTCAACGGAAGGTATACCATAAATGGTATCCGTATATACAGCTGATTTAGATTCAAAGCTTTTAATTTTTGAACTCGGAGCCTTTGTTACATTTCATGTTGAGTGATGTGGTGACCGTGTATGGTCGACTCACTAATTTAAGTAGAATTCTACTGAGGCGAAGCAGGTCTTTCAAAATTTCACGATTTCTTTTTTGTTGTATGTAGTTCTTAATAGTTAGTTCATTACCCGTTGAGACAAATATGGCTTGGCTGACTTAGATTAGTTTTTGAATGCTCTATACTGGCCGGGTTAGATTTCAAAAATCAAATGTCATTGAGGGTTGGCTGGTTGTTAGTTCTGTATGTTTTCTGAAGTATCTCTAATATTTAGCTTGTGTGTAATGTTGATCAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

mRNA sequence

ATGGGATACATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

Coding sequence (CDS)

ATGGGATACATTCCCACCGTCTTCTTCCTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTATGCAGTTCAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGAATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGAACCACCTGGTTGCGAAAATACGGGGTACCCCTTG

Protein sequence

MGYIPTVFFLNPALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEALASKLLHMLYSLAREVKMETARDSNEEVSQKIRPHRGVLQSNEPPGCENTGYPL

Homology

[Close]

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-45
Identity = 106/187 (56.68%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 76  NNQHAVSTAPR------------VHGGCITQPPQLELVGHSIACAS-NQYQDPYYAGLMA 135
           N +  V+T+P+            +H G    PP  +LVGH++  AS N YQDPYYAG+M 
Sbjct: 78  NKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMG 137

Query: 136 AYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV 195
           AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAKQYQ ILRRRQARAKAE+E KLIK 
Sbjct: 138 AYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS 197

Query: 196 RKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPG 250
           RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S  K++E  +G    S SS +     
Sbjct: 198 RKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASKRKAEEKSNGHVTQSPSSSN----S 257

[Close]

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-45
Identity = 110/195 (56.41%), Postives = 139/195 (71.28%), Query Frame = 1


Query: 61  SPSATGG-NVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAG 120
           S +AT   +V   G   N  A+S    +H   + QPP  ELVGH IAC  N YQDPYY G
Sbjct: 84  SQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGG 143

Query: 121 LMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKL 180
           LM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VNAKQY+GILRRR+ARAKAE+E K+
Sbjct: 144 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 203

Query: 181 IKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-LSSTMKSKESGSGQAISSSSSGSE 240
           I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++   +  + +E GS    +++SSGSE
Sbjct: 204 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERGS----ATNSSGSE 263

Query: 241 AVPGALAETWNSSNS 254
            V     ET NSS +
Sbjct: 264 QVETDSNETLNSSGA 271

[Close]

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-20
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1


Query: 103 HSIACASNQYQDPYYAGLMAAYGHQPMG-YPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 162
           +S+A     Y DPYY  + A       G +   +G+    + LP +  +EPVFVNAKQY 
Sbjct: 51  NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 163 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKSLSSTM 222
           GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG GGRF  AKK +     S+ 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 223 KSKES-GSGQAISSSSSGS 238
           + K +  +G++  ++SSG+
Sbjct: 171 EEKSNLSAGKSAMAASSGT 189

[Close]

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 86/247 (34.82%), Postives = 124/247 (50.20%), Query Frame = 1


Query: 12  PALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG 71
           PA++ S +        S    + ES    +   G Y   +  SI  N +S         G
Sbjct: 43  PAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKR-YGCSIVNNNLSGYIEN---LG 102

Query: 72  QGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACAS----NQYQDPYYAGLMAAYGHQ 131
           +   N   +++T+  V    +   P    +  S+ CA     N +  P YA    A  H 
Sbjct: 103 KPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHL 162

Query: 132 PMGYPPFIGMPHARMALPLEVAQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPY 191
            M     +G+  +R+ LP  + + EP+FVNAKQY  ILRRR+ RAK E +NKLIK RKPY
Sbjct: 163 EM-----MGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPY 222

Query: 192 LHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAE 251
           LHESRH HA++RARG+GGRF    + +  S+++ S +  +GQ  S S  G  +  G+ + 
Sbjct: 223 LHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS-SS 279

Query: 252 TWNSSNS 254
              SSNS
Sbjct: 283 ISPSSNS 279

[Close]

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-20
Identity = 74/197 (37.56%), Postives = 101/197 (51.27%), Query Frame = 1


Query: 68  NVYGQGQHNNQHAVS------TAPRVHGGCITQPPQLELV-GHSIACASNQYQDPYYAGL 127
           +V+    +N  HA        T P+V  G  ++      V    +A     Y DPYY  +
Sbjct: 4   SVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLYPYPDPYYRSV 63

Query: 128 MAAYGHQPMGYP----PFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVE 187
            A   + P  YP      +GM    + L  +  +EPVFVNAKQY GILRRRQ+RAK E  
Sbjct: 64  FAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEAR 123

Query: 188 NKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSG 247
           N+ IK +KPY+HESRH HA+RR RG GGRF   N  K      + +E+ S +  S +SS 
Sbjct: 124 NRAIKAKKPYMHESRHLHAIRRPRGCGGRFL--NAKKENGDHKEEEEATSDENTSEASSS 183

Query: 248 SEAVPGALAETWNSSNS 254
             +   A+A +  +  S
Sbjct: 184 LRSEKLAMATSGPNGRS 198

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL
Match: A0A0A0KEL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439960 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 192/288 (66.67%), Postives = 208/288 (72.22%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPN----------------------------------MQQTGSYSE 83
           MQ KSKSVNQ+ESEPPN                                  ++ T   SE
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  PW-WRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              +GQ QHN QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL
Match: M5WIA6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006634mg PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76
Identity = 166/286 (58.04%), Postives = 186/286 (65.03%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG------------ 83
           MQ KS++ N++ ++   +     YSEPWWR +GYNPISP+ TG N               
Sbjct: 1   MQSKSETENRLHADHHTIPPNSVYSEPWWRGVGYNPISPAVTGRNASNSSSLECPNGGSE 60

Query: 84  ------------------------------------QGQHNNQHAVSTAPRVHGGCITQP 143
                                               Q + N  H  ST P V   C+ QP
Sbjct: 61  SNDDRSLSNDEPNEDDDDDATKESQITSPRSAGNDGQERQNMPHVGSTVPTVRDDCLAQP 120

Query: 144 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 203
           PQLELVGHSIACASN YQDPYYAG+MAAYGHQP+GYPPF+GMPHARM LPLE+AQEPV+V
Sbjct: 121 PQLELVGHSIACASNPYQDPYYAGMMAAYGHQPLGYPPFLGMPHARMPLPLEMAQEPVYV 180

Query: 204 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSL 259
           NAKQYQGILRRRQARAKAE+E KLIKVRKPYLHESRHQHAMRRARGTGGRFAKK      
Sbjct: 181 NAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTNGDKS 240

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL
Match: A0A061GTI4_THECC (Nuclear transcription factor Y subunit A-9, putative OS=Theobroma cacao GN=TCM_040712 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.7e-69
Identity = 163/283 (57.60%), Postives = 198/283 (69.96%), Query Frame = 1


Query: 2   GYIPTVFFLNPALRIS--SIFSPGMQFKSKSVNQVESEPPNMQQT--------GSYSEPW 61
           G  PT  +  P  R    S  SPG++  + S N    E PN  ++        G  +E  
Sbjct: 17  GVPPTAVYSEPWWRNIGYSAISPGVRGGNTS-NSSSMECPNGSESNDGQSLSNGGVNEED 76

Query: 62  WRSIGYNPISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQ 121
             +      + S + GN  GQ  HN QH  ST P +H  C+TQPPQLELVGHSIACA+N 
Sbjct: 77  DGNKETQTTASSRSVGNG-GQEHHNLQHVASTMPAMHDECLTQPPQLELVGHSIACAANP 136

Query: 122 YQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARA 181
           YQDP+Y G+MAAYGHQP+GYPPF+GMPHARMALP+E+AQEPV+VNAKQYQGILRRRQARA
Sbjct: 137 YQDPFYGGMMAAYGHQPLGYPPFVGMPHARMALPIEMAQEPVYVNAKQYQGILRRRQARA 196

Query: 182 KAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAIS 241
           KAE+E K++KVRKPYLHESRHQHAMRRARG+GGRFAKK++A +       K +GSG A+S
Sbjct: 197 KAELEKKVVKVRKPYLHESRHQHAMRRARGSGGRFAKKSDADT-----SRKGTGSGPALS 256

Query: 242 S---SSSGSEAVPGALAETWNSSNSQQEAR-AQLHESYEALAS 271
           S   SSSGSE +P   AETWNSS SQQEAR +Q+H+++    S
Sbjct: 257 SQSASSSGSEPLPADSAETWNSSLSQQEARGSQVHDTHHVNGS 292

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL
Match: A0A0B2REF6_GLYSO (Nuclear transcription factor Y subunit A-1 OS=Glycine soja GN=glysoja_022585 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 142/213 (66.67%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 59  PISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYA 118
           P +P+ TG   YGQ Q   QH  S+AP +   C+TQ PQLELVGHSIACA+N YQDPYY 
Sbjct: 86  PAAPNGTGN--YGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYG 145

Query: 119 GLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENK 178
           G+MAAYGHQ +GY PFIGMPHARM LPLE+AQEPV+VNAKQYQGILRRRQARAKAE+E K
Sbjct: 146 GMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERK 205

Query: 179 LIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISS---SSS 238
           LIK RKPYLHESRHQHAMRRARGTGGRFAKK + +  + + K K++G+   +SS   SSS
Sbjct: 206 LIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSS 265

Query: 239 GSEAVPGALAETWNSSNSQQEARA-QLHESYEA 268
           GSE +    AETWNS N QQ+ARA ++H  ++A
Sbjct: 266 GSEPLHSDSAETWNSPNMQQDARASKVHNRFKA 296

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL
Match: K7MQE5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G071000 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 142/213 (66.67%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 59  PISPSATGGNVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYA 118
           P +P+ TG   YGQ Q   QH  S+AP +   C+TQ PQLELVGHSIACA+N YQDPYY 
Sbjct: 86  PAAPNGTGN--YGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYG 145

Query: 119 GLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENK 178
           G+MAAYGHQ +GY PFIGMPHARM LPLE+AQEPV+VNAKQYQGILRRRQARAKAE+E K
Sbjct: 146 GMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERK 205

Query: 179 LIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISS---SSS 238
           LIK RKPYLHESRHQHAMRRARGTGGRFAKK + +  + + K K++G+   +SS   SSS
Sbjct: 206 LIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSS 265

Query: 239 GSEAVPGALAETWNSSNSQQEARA-QLHESYEA 268
           GSE +    AETWNS N QQ+ARA ++H  ++A
Sbjct: 266 GSEPLHSDSAETWNSPNMQQDARASKVHNRFKA 296

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10
Match: AT3G20910.1 (AT3G20910.1 nuclear factor Y, subunit A9)

HSP 1 Score: 184.9 bits (468), Expect = 7.9e-47
Identity = 106/187 (56.68%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 76  NNQHAVSTAPR------------VHGGCITQPPQLELVGHSIACAS-NQYQDPYYAGLMA 135
           N +  V+T+P+            +H G    PP  +LVGH++  AS N YQDPYYAG+M 
Sbjct: 78  NKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMG 137

Query: 136 AYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKV 195
           AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAKQYQ ILRRRQARAKAE+E KLIK 
Sbjct: 138 AYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKS 197

Query: 196 RKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPG 250
           RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S  K++E  +G    S SS +     
Sbjct: 198 RKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASKRKAEEKSNGHVTQSPSSSN----S 257

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10
Match: AT5G12840.1 (AT5G12840.1 nuclear factor Y, subunit A1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-46
Identity = 110/195 (56.41%), Postives = 139/195 (71.28%), Query Frame = 1


Query: 61  SPSATGG-NVYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAG 120
           S +AT   +V   G   N  A+S    +H   + QPP  ELVGH IAC  N YQDPYY G
Sbjct: 84  SQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQPP--ELVGHYIACVPNPYQDPYYGG 143

Query: 121 LMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKL 180
           LM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VNAKQY+GILRRR+ARAKAE+E K+
Sbjct: 144 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 203

Query: 181 IKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-LSSTMKSKESGSGQAISSSSSGSE 240
           I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++   +  + +E GS    +++SSGSE
Sbjct: 204 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERGS----ATNSSGSE 263

Query: 241 AVPGALAETWNSSNS 254
            V     ET NSS +
Sbjct: 264 QVETDSNETLNSSGA 271

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10
Match: AT1G30500.2 (AT1G30500.2 nuclear factor Y, subunit A7)

HSP 1 Score: 101.7 bits (252), Expect = 8.8e-22
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1


Query: 103 HSIACASNQYQDPYYAGLMAAYGHQPMG-YPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 162
           +S+A     Y DPYY  + A       G +   +G+    + LP +  +EPVFVNAKQY 
Sbjct: 51  NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 163 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKSLSSTM 222
           GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG GGRF  AKK +     S+ 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 223 KSKES-GSGQAISSSSSGS 238
           + K +  +G++  ++SSG+
Sbjct: 171 EEKSNLSAGKSAMAASSGT 189

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10
Match: AT1G54160.1 (AT1G54160.1 nuclear factor Y, subunit A5)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 86/247 (34.82%), Postives = 124/247 (50.20%), Query Frame = 1


Query: 12  PALRISSIFSPGMQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG 71
           PA++ S +        S    + ES    +   G Y   +  SI  N +S         G
Sbjct: 43  PAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKR-YGCSIVNNNLSGYIEN---LG 102

Query: 72  QGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACAS----NQYQDPYYAGLMAAYGHQ 131
           +   N   +++T+  V    +   P    +  S+ CA     N +  P YA    A  H 
Sbjct: 103 KPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHL 162

Query: 132 PMGYPPFIGMPHARMALPLEVAQ-EPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPY 191
            M     +G+  +R+ LP  + + EP+FVNAKQY  ILRRR+ RAK E +NKLIK RKPY
Sbjct: 163 EM-----MGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPY 222

Query: 192 LHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAE 251
           LHESRH HA++RARG+GGRF    + +  S+++ S +  +GQ  S S  G  +  G+ + 
Sbjct: 223 LHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS-SS 279

Query: 252 TWNSSNS 254
              SSNS
Sbjct: 283 ISPSSNS 279

[Close]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10
Match: AT2G34720.1 (AT2G34720.1 nuclear factor Y, subunit A4)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-21
Identity = 74/197 (37.56%), Postives = 101/197 (51.27%), Query Frame = 1


Query: 68  NVYGQGQHNNQHAVS------TAPRVHGGCITQPPQLELV-GHSIACASNQYQDPYYAGL 127
           +V+    +N  HA        T P+V  G  ++      V    +A     Y DPYY  +
Sbjct: 4   SVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLYPYPDPYYRSV 63

Query: 128 MAAYGHQPMGYP----PFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVE 187
            A   + P  YP      +GM    + L  +  +EPVFVNAKQY GILRRRQ+RAK E  
Sbjct: 64  FAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEAR 123

Query: 188 NKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSG 247
           N+ IK +KPY+HESRH HA+RR RG GGRF   N  K      + +E+ S +  S +SS 
Sbjct: 124 NRAIKAKKPYMHESRHLHAIRRPRGCGGRFL--NAKKENGDHKEEEEATSDENTSEASSS 183

Query: 248 SEAVPGALAETWNSSNS 254
             +   A+A +  +  S
Sbjct: 184 LRSEKLAMATSGPNGRS 198

[Close]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr
Match: gi|659097589|ref|XP_008449707.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 1.0e-88
Identity = 196/288 (68.06%), Postives = 207/288 (71.88%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSY-----------------------------------S 83
           MQ KSKSVNQ ESEPPNMQQT SY                                    
Sbjct: 1   MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  EPWWRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              YGQ Q+N QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGSEA   ALAETWNSSN QQEAR QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr
Match: gi|778717036|ref|XP_011657641.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86
Identity = 192/288 (66.67%), Postives = 208/288 (72.22%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPN----------------------------------MQQTGSYSE 83
           MQ KSKSVNQ+ESEPPN                                  ++ T   SE
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  PW-WRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              +GQ QHN QHAVS AP VH GCITQPPQLELVG
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVG 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
           HSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 HSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 287

[Close]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr
Match: gi|778717041|ref|XP_011657643.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85
Identity = 190/284 (66.90%), Postives = 207/284 (72.89%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNV---------YGQGQ 83
           MQ KSKSVNQ+ESEPPNMQQT S+SEPWWRSIGYN ISP A GGNV          G  +
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  HNNQHAVS------------------TAPRVHGGCITQPPQLELVGHS----------IA 143
            N+  ++S                  +  +V   C        +V HS          +A
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIV-HSGCITQPPQLELA 120

Query: 144 CASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRR 203
           CASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQGILRR
Sbjct: 121 CASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRR 180

Query: 204 RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGS 263
           RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K+SGS
Sbjct: 181 RQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGS 240

Query: 264 GQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           GQAISS    SSGS+A P ALAETWNSSN QQE+R QLHE+YEA
Sbjct: 241 GQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEA 282

[Close]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr
Match: gi|659097595|ref|XP_008449710.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 7.6e-84
Identity = 191/288 (66.32%), Postives = 202/288 (70.14%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSY-----------------------------------S 83
           MQ KSKSVNQ ESEPPNMQQT SY                                    
Sbjct: 1   MQSKSKSVNQPESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 84  EPWWRSIGYNPISPSATGGNV------YGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 143
               +S+  + ++              YGQ Q+N QHAVS AP VH GCITQPPQLEL  
Sbjct: 61  SNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQNNCQHAVSAAPIVHSGCITQPPQLEL-- 120

Query: 144 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 203
              ACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQG
Sbjct: 121 ---ACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQG 180

Query: 204 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 263
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKKNE  SL STMK K
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDK 240

Query: 264 ESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEA 268
           +SGSGQAISS    SSGSEA   ALAETWNSSN QQEAR QLHE+YEA
Sbjct: 241 DSGSGQAISSHSAGSSGSEAAHCALAETWNSSNGQQEARTQLHEAYEA 282

[Close]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr
Match: gi|645241931|ref|XP_008227314.1| (PREDICTED: nuclear transcription factor Y subunit A-1 [Prunus mume])

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 169/296 (57.09%), Postives = 193/296 (65.20%), Query Frame = 1


Query: 24  MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVYG------------ 83
           MQ KS++ N++ ++   +     YSEPWWR +GYNPISP+ TG N               
Sbjct: 1   MQSKSETENRLHADHHTIPPNSVYSEPWWRGVGYNPISPAVTGRNASNSSSLECPNGGSE 60

Query: 84  ------------------------------------QGQHNNQHAVSTAPRVHGGCITQP 143
                                               Q + N  H  ST P V   C+ QP
Sbjct: 61  SNDDRSLSNDEPNEDDDDDATKESQITSPRSAGNDGQERQNVPHVGSTVPTVRDDCLAQP 120

Query: 144 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 203
           PQLELVGHSIACASN YQDPYYAG+MA+YGHQP+GYPPF+GMPHARM LPLE+AQEPV+V
Sbjct: 121 PQLELVGHSIACASNPYQDPYYAGMMASYGHQPLGYPPFLGMPHARMPLPLEMAQEPVYV 180

Query: 204 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSL 263
           NAKQYQGILRRRQARAKAE+E KLIKVRKPYLHESRHQHAMRRARGTGGRFAKK      
Sbjct: 181 NAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTNGDKS 240

Query: 264 SSTMKSKESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEAR-AQLHESYEA 268
           +ST + K +GSG A SS   SSSGSE  P   AETWNSSNSQQE R +Q+H+ Y A
Sbjct: 241 NSTGQEKGTGSGPAHSSQSGSSSGSEPFPSDSAETWNSSNSQQEGRGSQVHDPYSA 296

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYA9_ARATH	1.4e-45	56.68	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2...	[more]
NFYA1_ARATH	4.1e-45	56.41	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2...	[more]
NFYA7_ARATH	1.6e-20	46.76	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2...	[more]
NFYA5_ARATH	2.0e-20	34.82	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2...	[more]
NFYA4_ARATH	7.7e-20	37.56	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2...	[more]

BLAST of Cp4.1LG05g04960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL9_CUCSA	1.5e-86	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439960 PE=4 SV=1	[more]
M5WIA6_PRUPE	1.1e-76	58.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006634mg PE=4 SV=1	[more]
A0A061GTI4_THECC	1.7e-69	57.60	Nuclear transcription factor Y subunit A-9, putative OS=Theobroma cacao GN=TCM_0...	[more]
A0A0B2REF6_GLYSO	4.5e-67	66.67	Nuclear transcription factor Y subunit A-1 OS=Glycine soja GN=glysoja_022585 PE=...	[more]
K7MQE5_SOYBN	4.5e-67	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_18G071000 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20910.1	7.9e-47	56.68	nuclear factor Y, subunit A9	[more]
AT5G12840.1	2.3e-46	56.41	nuclear factor Y, subunit A1	[more]
AT1G30500.2	8.8e-22	46.76	nuclear factor Y, subunit A7	[more]
AT1G54160.1	1.1e-21	34.82	nuclear factor Y, subunit A5	[more]
AT2G34720.1	4.4e-21	37.56	nuclear factor Y, subunit A4	[more]

BLAST of Cp4.1LG05g04960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097589\|ref\|XP_008449707.1\|	1.0e-88	68.06	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis m...	[more]
gi\|778717036\|ref\|XP_011657641.1\|	2.1e-86	66.67	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis s...	[more]
gi\|778717041\|ref\|XP_011657643.1\|	1.1e-85	66.90	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis s...	[more]
gi\|659097595\|ref\|XP_008449710.1\|	7.6e-84	66.32	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis m...	[more]
gi\|645241931\|ref\|XP_008227314.1\|	1.8e-77	57.09	PREDICTED: nuclear transcription factor Y subunit A-1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016602	CCAAT-binding factor complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR018362	CCAAT-binding_factor_CS
IPR001289	NFYA

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048731	system development
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g04960	Cp4.1LG05g04960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g04960.1	Cp4.1LG05g04960.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g04960.1:cds:008	Cp4.1LG05g04960.1:cds:008	CDS
Cp4.1LG05g04960.1:cds:007	Cp4.1LG05g04960.1:cds:007	CDS
Cp4.1LG05g04960.1:cds:006	Cp4.1LG05g04960.1:cds:006	CDS
Cp4.1LG05g04960.1:cds:005	Cp4.1LG05g04960.1:cds:005	CDS
Cp4.1LG05g04960.1:cds:004	Cp4.1LG05g04960.1:cds:004	CDS
Cp4.1LG05g04960.1:cds:003	Cp4.1LG05g04960.1:cds:003	CDS
Cp4.1LG05g04960.1:cds:002	Cp4.1LG05g04960.1:cds:002	CDS
Cp4.1LG05g04960.1:cds:001	Cp4.1LG05g04960.1:cds:001	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 183..206 score: 1.3E-23coord: 152..174 score: 1.3
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 33..267 score: 1.2E
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 151..206 score: 9.1
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 148..209 score: 2.7
IPR001289	Nuclear transcription factor Y subunit A	PROFILE	PS51152	NFYA_HAP2_2	coord: 149..209 score: 36
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 154..174 scor
None	No IPR available	PANTHER	PTHR12632:SF14	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED	coord: 33..267 score: 1.2E