Cp4.1LG05g03240 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g03240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein CONSTANS-LIKE 3
LocationCp4.1LG05 : 1967766 .. 1969247 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCTCAAGAACTTCATAAACGGGAAAGAACAAGACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACCAGAGCTTTATTTCCATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGGTATGGCATGTTATATATATTTTGGGGAGAAACCCATTTACGGTTGGTAGTAAATGTTTGAATATGGGGGCAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGGTTAGTATAGCAGAACTGAATTCAAAAACAAAAACGGTTTTCAGAGATTTGAGGATGCCGCATTAATGGGGAGTTTGGGATGAACTGAACAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGGTAAAAATCTCTTCTTTTTCTTTTTTATTTTATTTATTTAATGAGAAAAAAATTCATATATTGTTTGAATGCCAGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCACCTGGAAGGAGAAGAAGAAGATGAAGAAATATATATTATATATATATATATATATATTATTTATTTTTTCTTTTTCTTTTTCTTTTCCCCTTCCAGCGAAGGGAGAAAAAAAAAAGAAAAAAAGAACTTGACCAAAAGGCCCTTTATTCACAACTCTGTCTAAATAAGTAAATAATAATAATTGAACAGAGGTGGGGGTAGTGG

mRNA sequence

AACTCTCAAGAACTTCATAAACGGGAAAGAACAAGACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACCAGAGCTTTATTTCCATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCACCTGGAAGGAGAAGAAGAAGATGAAGAAATATATATTATATATATATATATATATATTATTTATTTTTTCTTTTTCTTTTTCTTTTCCCCTTCCAGCGAAGGGAGAAAAAAAAAAGAAAAAAAGAACTTGACCAAAAGGCCCTTTATTCACAACTCTGTCTAAATAAGTAAATAATAATAATTGAACAGAGGTGGGGGTAGTGG

Coding sequence (CDS)

ATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGA

Protein sequence

MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYYPHQNPLPADESNSNSNSNSVDQLIPIPELALIPDSCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGEEMYGQVQFQYCEF
BLAST of Cp4.1LG05g03240 vs. Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1

Query: 225 SAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 274
           S+ +R+ R+ +YR KR+ R F KTI+YA RK  A++RPRI+GRFA+  E
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE 329

BLAST of Cp4.1LG05g03240 vs. Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 225 SAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSS 279
           ++ ER+ R+ +YR KR+ R F KTI+YA RK  A+ RPRI+GRFA+  +  +S+
Sbjct: 291 TSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESN 344

BLAST of Cp4.1LG05g03240 vs. TrEMBL
Match: A0A0A0KNV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.7e-69
Identity = 162/255 (63.53%), Postives = 179/255 (70.20%), Query Frame = 1

Query: 85  PIPELALIPD-SCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKSL 144
           P P+  L+P+ S SS NGFQNL+NF VKNEES LGFN PPLCFDP ++       VDKSL
Sbjct: 9   PTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPEN-------VDKSL 68

Query: 145 L-HRS---------RMESLLMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDLQNSS 204
           L HRS         R+E+ LMES   NFPN   SLPC ES+FFSSQIRRVFSTGDLQNS 
Sbjct: 69  LLHRSFSEKPNFQTRLETFLMES--QNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSG 128

Query: 205 MGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKY 264
            GRS               +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKY
Sbjct: 129 NGRS---------------SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKY 188

Query: 265 ACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGE---------- 315
           ACRKTLADNRPRIRGRFARNDEPG+  K + STREEDED+FW+E LH  E          
Sbjct: 189 ACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQ 239

BLAST of Cp4.1LG05g03240 vs. TrEMBL
Match: V4TM74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021189mg PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 117/235 (49.79%), Postives = 146/235 (62.13%), Query Frame = 1

Query: 72  NSNSNSNSVDQLIPIPELALIPDSCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDH 131
           +S+S+ N + Q     E  ++P S S   G +N++ +  ++  S+    +P   F P   
Sbjct: 100 DSSSSYNQIQQ-----EPLVLPHSYS---GVENVAKYMQRSYSSNCFDGKPGFSFQP--- 159

Query: 132 NNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSS 191
                           R +S+L    SPNF NQ+L   E+ FF+ Q+RRV STGDLQN+ 
Sbjct: 160 ----------------RFDSVLE---SPNFHNQALSSPENSFFAGQMRRVCSTGDLQNTK 219

Query: 192 MGRSRTGCGQGSFSSPLS-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIK 251
           +        Q SFSSPL+ E+  +EE NFKVGRYSAEERKERI KYRAKR QRNFNKTIK
Sbjct: 220 IPHK----SQRSFSSPLATESSFMEEANFKVGRYSAEERKERILKYRAKRNQRNFNKTIK 279

Query: 252 YACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGEEMYG 306
           YACRKTLADNRPRIRGRFARNDE GD  K + S R+EDEDE W++ L   EE  G
Sbjct: 280 YACRKTLADNRPRIRGRFARNDEAGDVPKAAYSARDEDEDELWLDGLQQEEEEDG 300

BLAST of Cp4.1LG05g03240 vs. TrEMBL
Match: W9QPI7_9ROSA (Zinc finger protein CONSTANS-LIKE 3 OS=Morus notabilis GN=L484_024243 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.3e-41
Identity = 151/374 (40.37%), Postives = 186/374 (49.73%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+   S    SSS          +++  S+A+  F     S  FSD  ID  +  
Sbjct: 1   MSSDLFIFDGSFYHHSSSP---------EMLVSSEAELFFNDNEFSSPFSDSAID--ILQ 60

Query: 61  PHQNPLPADESNSNSNSNSVDQLIPIPELALIPDSCSS--------PNGFQNLSNFGVKN 120
              +P+     + N N N    L+  P+++       S         NG  NL  F +K 
Sbjct: 61  ALSDPIQQQSQSQNQNQNP---LLDQPQISPPTQELQSLNLYHPNLENGIANLDAFQIKT 120

Query: 121 EESHLGF-----------------NQPPLCFDPSDHNN-------------NNAATVDKS 180
           EE HLG                  N        SDH+              N A  + +S
Sbjct: 121 EECHLGTFENINSFYNNNENNDYNNSYNYSISGSDHSQVVQFGPHSYSGVQNVAKFMQRS 180

Query: 181 LLHRSRMESLLMESVSPNFPNQSLPCS-----ESEFFSSQIRRVFSTGDLQNSSMGRSRT 240
                 + S  +ES S  F NQ+   S      +   +  +RRV STGDLQ  + G +RT
Sbjct: 181 CSSSGFLFSPSVES-SSTFGNQASFSSPENNNNNAILNGHMRRVCSTGDLQGQNFGTTRT 240

Query: 241 GCGQGSFSSPL--SENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRK 300
              Q SFSSPL  SE+  +EE NFKVG+YSAEERKERISKYRAKR  RNFNKTIKYACRK
Sbjct: 241 T--QRSFSSPLANSESSFMEEANFKVGKYSAEERKERISKYRAKRTLRNFNKTIKYACRK 300

Query: 301 TLADNRPRIRGRFARNDEP--GDSSKPSSSTREEDEDEFWMERLHAGEE----------- 315
           TLADNRPRIRGRFARNDEP  G++ K  SS+R+EDED+ W+E LH  EE           
Sbjct: 301 TLADNRPRIRGRFARNDEPGFGETPKAPSSSRDEDEDDLWLEGLHEEEEDNETAMRGQFL 357

BLAST of Cp4.1LG05g03240 vs. TrEMBL
Match: B9GWU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 145/345 (42.03%), Postives = 181/345 (52.46%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDL+V            +S +  S  ++V P   D  F +   SP F D  ID+    
Sbjct: 1   MSSDLYV----------LDASFYNHSTPEIVSPDGGDL-FFSDPFSP-FCDSSIDI---- 60

Query: 61  PHQNPLPADESNSNS-----NSNSVDQLIPI------PELALIPDSCSSPNGFQNLSN-- 120
                L    +N N+     NSNSVD   P       P   L   S    N FQ L+N  
Sbjct: 61  -----LQESSNNQNNQCPLENSNSVDSFSPSILSSSPPSHQLENLSLYQTNHFQALANGE 120

Query: 121 --------------FGVKNEESHLGFNQP--PLCFDPSDHNN--NNAATVDKS------- 180
                           VK EE  L F        F P  +++  N A  + +S       
Sbjct: 121 NLASGYTNFPGLDALEVKTEECQLSFKSTYNQHSFMPHSYSSVENVAKMMQRSYSSNSFE 180

Query: 181 ----LLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTG 240
                L + R ++LL    SPN+ +Q+L   E+ F + Q+RRV+STGDLQN +     T 
Sbjct: 181 GKPGFLFQPRFDTLLE---SPNYQSQALSSPENNFLAGQLRRVYSTGDLQNINRTTHAT- 240

Query: 241 CGQGSFSSPLS-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTL 300
             + S SSPL+ E+  +EE NFKVGRYSAEERKERISKYRAKR QRNF KTIKYACRKTL
Sbjct: 241 --ERSLSSPLATESSFIEESNFKVGRYSAEERKERISKYRAKRTQRNFTKTIKYACRKTL 300

Query: 301 ADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGEE 303
           ADNRPRIRGRFARNDE G+  K + STR+EDE+E W + LH  E+
Sbjct: 301 ADNRPRIRGRFARNDETGEIPKVACSTRDEDEEELWFDGLHEEED 318

BLAST of Cp4.1LG05g03240 vs. TrEMBL
Match: B9GKF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 140/353 (39.66%), Postives = 195/353 (55.24%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDL---- 60
           MSSDL+V            +S +  S+ ++V P + D  F +   SP F D  ID+    
Sbjct: 1   MSSDLYV----------LDASFYHLSSPEIVSP-EGDL-FFSDPFSP-FRDSSIDILQEF 60

Query: 61  ----HVYYPHQNPLPADESN-----SNSNSNSVDQL-IPIPELALIPDSCSSPNGFQN-- 120
               ++  P +N    D  N     S+  S+ ++ L +    L  + +S +  +G+ N  
Sbjct: 61  SNNQNIQCPVENSKFVDSFNPSILSSSPPSHQLENLSLYTNHLQALANSENLADGYGNFP 120

Query: 121 -LSNFGVKNEESHLGFNQP--PLCFDPSDHN-------------NNNAATVDKSLLHRSR 180
            L   GVK EE  +GF+       F P  ++             ++N+   +   L + R
Sbjct: 121 GLDALGVKTEECQVGFDPSYNQQSFMPHSYSGVENVAKMMQRSYSSNSFEGNPGFLFQPR 180

Query: 181 MESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPL 240
            ++L     SPN+  Q+L   E+ F + Q+RRV S GDLQ+ +     T   Q SFSSPL
Sbjct: 181 FDTLFE---SPNYQGQALSLPENNFLAGQLRRVCSAGDLQSINKTPHTT---QRSFSSPL 240

Query: 241 S-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGR 300
           + E+  +E+ NFKVGRYSAEERKERISKYRAKR QRNF+KTIKYACRKTLADNRPRIRGR
Sbjct: 241 ATESSFIEDSNFKVGRYSAEERKERISKYRAKRNQRNFSKTIKYACRKTLADNRPRIRGR 300

Query: 301 FARNDEPGDSSKPSSSTREEDEDEFWMERLHAGEE---------MYGQVQFQY 312
           FARN+E G++ K + STR+EDE+E W++ LH  E+          + Q QFQY
Sbjct: 301 FARNEETGETPKVACSTRDEDEEELWLDGLHEEEDDGAIRGSPGGFAQPQFQY 334

BLAST of Cp4.1LG05g03240 vs. TAIR10
Match: AT1G63820.1 (AT1G63820.1 CCT motif family protein)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33
Identity = 127/317 (40.06%), Postives = 166/317 (52.37%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDL-VFPSDADFQFLTGSCSPNFSDHGIDLHVY 60
           M SDL++   SSSSSS        C ++D  +F SD                   DL+  
Sbjct: 1   MDSDLYIFDGSSSSSSI-------CHSTDPDMFSSDTTTT--------------TDLYCN 60

Query: 61  YPHQNPLPADESN----SNSNSNSVDQLIPIPELALIPD-SCSSPNGFQNLSNFGVKNEE 120
            P+ NP   D  +     +    +   L   P ++ +   + +  N F N S F      
Sbjct: 61  NPYLNPSMDDHQSLSFFESFTPTTHHILSSSPPISQLQTLTLTHTNSFPNFSGF------ 120

Query: 121 SHLGFNQPPLCFDPSDHNNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCS-ESEF 180
                              N      + LL  S  ++  ME  S NF NQ+L  S E  F
Sbjct: 121 ------------------ENFDTVKTEQLLFNSPFDAPFMED-SSNFQNQNLLNSPEDSF 180

Query: 181 FSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGSL------EEGNFKVGRYSAE 240
           FS  +RRV+STGDLQN  +GR  TG  Q S+SSPL+   S       +E + +VGRYS+E
Sbjct: 181 FSDHMRRVYSTGDLQN--LGRDFTG--QRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSE 240

Query: 241 ERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSS-TRE 300
           ERKE+ISKYRAKR QRNF KTIKYACRKTLADNRPR+RGRFARNDE  ++ K +SS TR+
Sbjct: 241 ERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEVFENPKIASSFTRQ 267

Query: 301 EDEDEFW-MERLHAGEE 303
           E++D+ W ++ LH  EE
Sbjct: 301 ENDDDLWNLDGLHEEEE 267

BLAST of Cp4.1LG05g03240 vs. TAIR10
Match: AT5G41380.1 (AT5G41380.1 CCT motif family protein)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30
Identity = 126/319 (39.50%), Postives = 168/319 (52.66%), Query Frame = 1

Query: 2   SSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFS-DHGIDLHVYY 61
           S+D ++       SSSSSSS+FR S+ D+ F SD          +  +S +  +++  ++
Sbjct: 4   STDFYIF----DGSSSSSSSVFRNSSPDM-FSSDTTTTTDLFCNNELYSVEESLNIFDHF 63

Query: 62  PHQNPLPADESNSNSNSNSVDQLIPIPELALIPDSCSSPNGFQNLSNF----GVKNEESH 121
             Q+ L +   +    + S+ Q IP     L P          N S+F     VK E+  
Sbjct: 64  TPQHILSSSPPSDLLGTLSLSQHIPT---GLYP----------NFSDFQISDAVKTEKFF 123

Query: 122 LGFNQPPLCFDPSDHNNNNAATVDKSLLHRS--------RMESLLMESVSPNFPNQSLPC 181
            G NQ            N+   + +S    S             +M+S + ++ N S P 
Sbjct: 124 DGHNQAATMARSYSTIENSGRYMQRSFSSNSVEGKQTQVPFNIPMMDSSNLSYNNLSSP- 183

Query: 182 SESEFFSSQIRRVFSTGDLQNS-SMGRSRTGCGQGSFSSPLSENGSL---EEGNFKVGRY 241
            E+ FFSSQ+RRV+STGDLQN+  M RS             SEN ++   EE NFKVGRY
Sbjct: 184 -ENAFFSSQMRRVYSTGDLQNNMEMQRS-------------SENSTMPFSEEQNFKVGRY 243

Query: 242 SAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSST 301
           SAEERKE+ISKYRAKR QRNF KTIKYACRKTLAD+RPRIRGRFARNDE  +        
Sbjct: 244 SAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVE-----IPN 284

Query: 302 REEDEDEFW-MERLHAGEE 303
            E+D+ E W ++ LH  EE
Sbjct: 304 IEDDDSELWKLDGLHEKEE 284

BLAST of Cp4.1LG05g03240 vs. TAIR10
Match: AT5G59990.1 (AT5G59990.1 CCT motif family protein)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-20
Identity = 77/193 (39.90%), Postives = 101/193 (52.33%), Query Frame = 1

Query: 85  PIPELALIPDSCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKSLL 144
           P P LAL+  S +S    + +S FG                FD   +    +++ D    
Sbjct: 39  PPPPLALLMMSQNSLYAAEAVSGFGY---------------FDSGMNGGGGSSSCDSPSS 98

Query: 145 HRSRMESLLME-SVSPNFPNQSLPCSESEFFSSQ---IRRVFSTGDLQNSSMGRSRTGCG 204
             S  ESL+M+ SVS +        +  +F +     +RR  S GDL  SS   S     
Sbjct: 99  MGSGGESLVMQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRES----- 158

Query: 205 QGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADN 264
               S+  SE+ ++ EG  K  +YS EE+KE+I KYR+KR  RNFNK IKY CRKTLAD+
Sbjct: 159 ----STVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADS 207

Query: 265 RPRIRGRFARNDE 274
           RPRIRGRFARNDE
Sbjct: 219 RPRIRGRFARNDE 207

BLAST of Cp4.1LG05g03240 vs. TAIR10
Match: AT2G33350.1 (AT2G33350.1 CCT motif family protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 1

Query: 159 PNFPNQSLPCSESEFFS-SQIRRVFSTGDLQNSSMG----RSRTGCGQGSFS-SPLSENG 218
           P+ P          FF    I+R+F+  DLQ +  G    +S     Q   +  P+  NG
Sbjct: 235 PHDPLMDFQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGPVDING 294

Query: 219 SLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARND 278
             +    KVG+ S E+RKE+I +Y  KR +RNFNK IKYACRKTLAD+RPR+RGRFA+ND
Sbjct: 295 LEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKND 354

Query: 279 EPGDSSKPSSSTREEDEDE 292
           E G+ ++ + S+  +DEDE
Sbjct: 355 EFGEPNRQAFSSHHDDEDE 373

BLAST of Cp4.1LG05g03240 vs. TAIR10
Match: AT1G04500.1 (AT1G04500.1 CCT motif family protein)

HSP 1 Score: 88.2 bits (217), Expect = 9.8e-18
Identity = 47/84 (55.95%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 209 SENGSLEEGNF-KVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGR 268
           +E   L++ +F KVG+ SAE+RKE+I +Y  KR +RNF+K IKYACRKTLAD+RPR+RGR
Sbjct: 267 TEITGLDDPSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGR 326

Query: 269 FARNDEPGDSSKPSSSTREEDEDE 292
           FA+NDE G+ ++ + S+  ED+D+
Sbjct: 327 FAKNDEFGEPNRQACSSHHEDDDD 350

BLAST of Cp4.1LG05g03240 vs. NCBI nr
Match: gi|778699549|ref|XP_011654732.1| (PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 2.8e-91
Identity = 217/352 (61.65%), Postives = 241/352 (68.47%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSS     SSLFRCS+SDLVFPS+AD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSS-----SSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELALIPD-SCSSPNGFQNLS 120
           P Q    NPL  DE NSN+NS SVD  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPL-LDEFNSNNNSISVDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQNLT 120

Query: 121 NFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKS-LLHRS---------RMESLLMES 180
           NF VKNEES LGFN PPLCFDP ++       VDKS LLHRS         R+E+ LME 
Sbjct: 121 NFDVKNEESLLGFNNPPLCFDPPEN-------VDKSLLLHRSFSEKPNFQTRLETFLME- 180

Query: 181 VSPNFPN--QSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGSL 240
            S NFPN   SLPC ES+FFSSQIRRVFSTGDLQNS  GRS               +  +
Sbjct: 181 -SQNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRS---------------SSLM 240

Query: 241 EEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEP 300
           EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFARNDEP
Sbjct: 241 EEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEP 300

Query: 301 GDSSKPSSSTREEDEDEFWMERLHAGE------------EMYGQVQFQYCEF 315
           G+  K + STREEDED+FW+E LH  E            EMYG++QFQYC F
Sbjct: 301 GEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 322

BLAST of Cp4.1LG05g03240 vs. NCBI nr
Match: gi|449452462|ref|XP_004143978.1| (PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 6.9e-90
Identity = 217/353 (61.47%), Postives = 241/353 (68.27%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSS     SSLFRCS+SDLVFPS+AD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSS-----SSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELALIPD-SCSSPNGFQNLS 120
           P Q    NPL  DE NSN+NS SVD  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPL-LDEFNSNNNSISVDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQNLT 120

Query: 121 NFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKS-LLHRS---------RMESLLMES 180
           NF VKNEES LGFN PPLCFDP ++       VDKS LLHRS         R+E+ LME 
Sbjct: 121 NFDVKNEESLLGFNNPPLCFDPPEN-------VDKSLLLHRSFSEKPNFQTRLETFLME- 180

Query: 181 VSPNFPN--QSLPCSESEFFSSQIRRVFSTGDL-QNSSMGRSRTGCGQGSFSSPLSENGS 240
            S NFPN   SLPC ES+FFSSQIRRVFSTGDL QNS  GRS               +  
Sbjct: 181 -SQNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS---------------SSL 240

Query: 241 LEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 300
           +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFARNDE
Sbjct: 241 MEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 300

Query: 301 PGDSSKPSSSTREEDEDEFWMERLHAGE------------EMYGQVQFQYCEF 315
           PG+  K + STREEDED+FW+E LH  E            EMYG++QFQYC F
Sbjct: 301 PGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 323

BLAST of Cp4.1LG05g03240 vs. NCBI nr
Match: gi|659073898|ref|XP_008437312.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 6.5e-88
Identity = 216/353 (61.19%), Postives = 238/353 (67.42%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSSSS     LFRCS+SDLVFPSDAD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSSSS-----LFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELALIPD-SCSSPNGFQNLS 120
           P Q    NPLP DE NSN NS S+D  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPLP-DEFNSN-NSISIDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQNLT 120

Query: 121 NFGVKNEESHLGFNQPPLC-FDPSDHNNNNAATVDKSLL-HRS---------RMESLLME 180
           NF VKNEES LGFN PPLC  DP ++       VDKSLL HRS         R+E+ LME
Sbjct: 121 NFDVKNEESLLGFNNPPLCSLDPPEN-------VDKSLLLHRSFSEKPNFQTRLETFLME 180

Query: 181 SVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGS 240
           S    FPN   SLPC ES+FFSSQIRRVFSTGDLQNS  GRS                  
Sbjct: 181 S--QKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRSSL---------------- 240

Query: 241 LEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 300
           +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFARNDE
Sbjct: 241 MEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 300

Query: 301 PGDSSKPSSSTREEDEDEFWMERLHAGE------------EMYGQVQFQYCEF 315
           PG+  K + STREEDED+FW+E LH  E            EMYG++QFQYC F
Sbjct: 301 PGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 321

BLAST of Cp4.1LG05g03240 vs. NCBI nr
Match: gi|659073896|ref|XP_008437311.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86
Identity = 216/354 (61.02%), Postives = 238/354 (67.23%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSS     SSLFRCS+SDLVFPSDAD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSS-----SSLFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELALIPD-SCSSPNGFQNLS 120
           P Q    NPLP DE NSN NS S+D  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPLP-DEFNSN-NSISIDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQNLT 120

Query: 121 NFGVKNEESHLGFNQPPLC-FDPSDHNNNNAATVDKS-LLHRS---------RMESLLME 180
           NF VKNEES LGFN PPLC  DP ++       VDKS LLHRS         R+E+ LME
Sbjct: 121 NFDVKNEESLLGFNNPPLCSLDPPEN-------VDKSLLLHRSFSEKPNFQTRLETFLME 180

Query: 181 SVSPNFPN--QSLPCSESEFFSSQIRRVFSTGDL-QNSSMGRSRTGCGQGSFSSPLSENG 240
             S  FPN   SLPC ES+FFSSQIRRVFSTGDL QNS  GRS                 
Sbjct: 181 --SQKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS----------------S 240

Query: 241 SLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARND 300
            +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFARND
Sbjct: 241 LMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARND 300

Query: 301 EPGDSSKPSSSTREEDEDEFWMERLHAGE------------EMYGQVQFQYCEF 315
           EPG+  K + STREEDED+FW+E LH  E            EMYG++QFQYC F
Sbjct: 301 EPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 322

BLAST of Cp4.1LG05g03240 vs. NCBI nr
Match: gi|700194900|gb|KGN50077.1| (hypothetical protein Csa_5G152920 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 6.8e-69
Identity = 162/255 (63.53%), Postives = 179/255 (70.20%), Query Frame = 1

Query: 85  PIPELALIPD-SCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKSL 144
           P P+  L+P+ S SS NGFQNL+NF VKNEES LGFN PPLCFDP ++       VDKSL
Sbjct: 9   PTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPEN-------VDKSL 68

Query: 145 L-HRS---------RMESLLMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDLQNSS 204
           L HRS         R+E+ LMES   NFPN   SLPC ES+FFSSQIRRVFSTGDLQNS 
Sbjct: 69  LLHRSFSEKPNFQTRLETFLMES--QNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSG 128

Query: 205 MGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKY 264
            GRS               +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKY
Sbjct: 129 NGRS---------------SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKY 188

Query: 265 ACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGE---------- 315
           ACRKTLADNRPRIRGRFARNDEPG+  K + STREEDED+FW+E LH  E          
Sbjct: 189 ACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQ 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COL5_ARATH8.1e-0653.06Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2[more]
COL4_ARATH8.1e-0648.15Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KNV6_CUCSA4.7e-6963.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1[more]
V4TM74_9ROSI1.9e-4149.79Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021189mg PE=4 SV=1[more]
W9QPI7_9ROSA9.3e-4140.37Zinc finger protein CONSTANS-LIKE 3 OS=Morus notabilis GN=L484_024243 PE=4 SV=1[more]
B9GWU0_POPTR1.6e-4042.03Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1[more]
B9GKF0_POPTR2.3e-3939.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G63820.12.2e-3340.06 CCT motif family protein[more]
AT5G41380.12.3e-3039.50 CCT motif family protein[more]
AT5G59990.13.6e-2039.90 CCT motif family protein[more]
AT2G33350.11.5e-1843.88 CCT motif family protein[more]
AT1G04500.19.8e-1855.95 CCT motif family protein[more]
Match NameE-valueIdentityDescription
gi|778699549|ref|XP_011654732.1|2.8e-9161.65PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativ... [more]
gi|449452462|ref|XP_004143978.1|6.9e-9061.47PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativ... [more]
gi|659073898|ref|XP_008437312.1|6.5e-8861.19PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo][more]
gi|659073896|ref|XP_008437311.1|2.1e-8661.02PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo][more]
gi|700194900|gb|KGN50077.1|6.8e-6963.53hypothetical protein Csa_5G152920 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03240.1Cp4.1LG05g03240.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 229..271
score: 1.7
IPR010402CCT domainPROFILEPS51017CCTcoord: 229..271
score: 15
NoneNo IPR availablePANTHERPTHR31319FAMILY NOT NAMEDcoord: 153..302
score: 4.6
NoneNo IPR availablePANTHERPTHR31319:SF20CCT MOTIF FAMILY PROTEINcoord: 153..302
score: 4.6