Cp4.1LG13g01430 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG13g01430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein CONSTANS-LIKE 3
LocationCp4.1LG13 : 1032339 .. 1033411 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTGATCTGTTCATTCATGGCGATTCTTCTTCGTCGTCGTCTCTGTTTCGCTGTTCTTCCTCCGATTTGGTTTTCCCTTCTGATGCAGAGCTTCAATTCTTCTCTGATCCTTATTCTCCCAATTTCTCTGATTCCGCCATTGATGTTCTTAACCCACTCGCCGAGGAATTCAATTCCAATTCCAATTCCAATCCCAATCTCAATCCAAATCCCAATCCTCTGGATCAGTTCATACCGATGCAGGGCTTATCCCTCTCTCATGGAAACGATTTCCCTCTCCTCGCCGATCCTTCTTCTTCTTCCTCAAATGGATTTCAAAATCTCTCCAATTTCCATCTCAATTCAAACTCCTTCAATCAACCTCTCTGTTTCGACCCAATTCAAAATGCCGCCGCCGACAAATCCTTCCTGCACAGAAGCTTCAGTGAGAAGCCAGGCTTCCTCGGCGGCCAATCCCGCCTCGAATCCCTTCTCATGGACTCTCCAAATTTCCCCAATCAGTCCCTCCCCTGCCCAGAATCTGACTTTTTCTCCTCGCAAATCCGACGAGTTTTCAGCGCCGGCGACTTACAGGTATGCTCTGTTTTTCCTCCTCCGACTCAGAAACCCATTTTTTTAATACTCTGTTTGTGATGGAATCTCCGTCCAGAATTCCGGCAGGGGGCGGTCGGAGAATGGAAGCTCGTTAATGGAGGAAGGGAATTTCAAAGTGGGAAGATACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAACGCAGAGGAATTACAACAAGACGATCAAGGTTAGAAAGACAGAGTAAGAGATTTTTGTTCTTTTTTTTTTGTTCTTTTTTTGGGAATTTGAAACGATCAAAGCTTAAGAAATTGATGATCGGCGGCCATTAATGGAAGAGAGTGTGTGGTTTCTGGTAACAGTATGCATGTCGGAAAACGCTAGCCGACAACCGGCCGAGAATACGTGGCAGATTTGCACGCAATGACGAGCCTGGAGAGATTCCCAAAGCTGCATGTTCAACCAGGGAAGAAGACGAAGATGATTTCTGGGTATAA

mRNA sequence

ATGTCTTCTGATCTGTTCATTCATGGCGATTCTTCTTCGTCGTCGTCTCTGTTTCGCTGTTCTTCCTCCGATTTGGTTTTCCCTTCTGATGCAGAGCTTCAATTCTTCTCTGATCCTTATTCTCCCAATTTCTCTGATTCCGCCATTGATGTTCTTAACCCACTCGCCGAGGAATTCAATTCCAATTCCAATTCCAATCCCAATCTCAATCCAAATCCCAATCCTCTGGATCAGTTCATACCGATGCAGGGCTTATCCCTCTCTCATGGAAACGATTTCCCTCTCCTCGCCGATCCTTCTTCTTCTTCCTCAAATGGATTTCAAAATCTCTCCAATTTCCATCTCAATTCAAACTCCTTCAATCAACCTCTCTGTTTCGACCCAATTCAAAATGCCGCCGCCGACAAATCCTTCCTGCACAGAAGCTTCAGTGAGAAGCCAGGCTTCCTCGGCGGCCAATCCCGCCTCGAATCCCTTCTCATGGACTCTCCAAATTTCCCCAATCAGTCCCTCCCCTGCCCAGAATCTGACTTTTTCTCCTCGCAAATCCGACGAGTTTTCAGCGCCGGCGACTTACAGAATTCCGGCAGGGGGCGGTCGGAGAATGGAAGCTCGTTAATGGAGGAAGGGAATTTCAAAGTGGGAAGATACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAACGCAGAGGAATTACAACAAGACGATCAAGTATGCATGTCGGAAAACGCTAGCCGACAACCGGCCGAGAATACGTGGCAGATTTGCACGCAATGACGAGCCTGGAGAGATTCCCAAAGCTGCATGTTCAACCAGGGAAGAAGACGAAGATGATTTCTGGGTATAA

Coding sequence (CDS)

ATGTCTTCTGATCTGTTCATTCATGGCGATTCTTCTTCGTCGTCGTCTCTGTTTCGCTGTTCTTCCTCCGATTTGGTTTTCCCTTCTGATGCAGAGCTTCAATTCTTCTCTGATCCTTATTCTCCCAATTTCTCTGATTCCGCCATTGATGTTCTTAACCCACTCGCCGAGGAATTCAATTCCAATTCCAATTCCAATCCCAATCTCAATCCAAATCCCAATCCTCTGGATCAGTTCATACCGATGCAGGGCTTATCCCTCTCTCATGGAAACGATTTCCCTCTCCTCGCCGATCCTTCTTCTTCTTCCTCAAATGGATTTCAAAATCTCTCCAATTTCCATCTCAATTCAAACTCCTTCAATCAACCTCTCTGTTTCGACCCAATTCAAAATGCCGCCGCCGACAAATCCTTCCTGCACAGAAGCTTCAGTGAGAAGCCAGGCTTCCTCGGCGGCCAATCCCGCCTCGAATCCCTTCTCATGGACTCTCCAAATTTCCCCAATCAGTCCCTCCCCTGCCCAGAATCTGACTTTTTCTCCTCGCAAATCCGACGAGTTTTCAGCGCCGGCGACTTACAGAATTCCGGCAGGGGGCGGTCGGAGAATGGAAGCTCGTTAATGGAGGAAGGGAATTTCAAAGTGGGAAGATACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAACGCAGAGGAATTACAACAAGACGATCAAGTATGCATGTCGGAAAACGCTAGCCGACAACCGGCCGAGAATACGTGGCAGATTTGCACGCAATGACGAGCCTGGAGAGATTCCCAAAGCTGCATGTTCAACCAGGGAAGAAGACGAAGATGATTTCTGGGTATAA

Protein sequence

MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFNSNSNSNPNLNPNPNPLDQFIPMQGLSLSHGNDFPLLADPSSSSSNGFQNLSNFHLNSNSFNQPLCFDPIQNAAADKSFLHRSFSEKPGFLGGQSRLESLLMDSPNFPNQSLPCPESDFFSSQIRRVFSAGDLQNSGRGRSENGSSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWV
BLAST of Cp4.1LG13g01430 vs. Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.4e-06
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1

Query: 218 SAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACST 277
           S  +R+ R+ +YR K+  R + KTI+YA RK  A+ RPRI+GRFA+  +  E    A ST
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFST 341

BLAST of Cp4.1LG13g01430 vs. TrEMBL
Match: A0A0A0KNV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-78
Identity = 168/215 (78.14%), Postives = 178/215 (82.79%), Query Frame = 1

Query: 82  MQGLSLSHGN-DFPLLADPSSSSSNGFQNLSNFHLNSNSF-----NQPLCFDPIQNAAAD 141
           MQGLSLSH   DFPLL +PS SSSNGFQNL+NF + +        N PLCFDP +N   D
Sbjct: 1   MQGLSLSHPTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPENV--D 60

Query: 142 KSFL-HRSFSEKPGFLGGQSRLESLLMDSPNFPNQ--SLPCPESDFFSSQIRRVFSAGDL 201
           KS L HRSFSEKP F   Q+RLE+ LM+S NFPN   SLPCPESDFFSSQIRRVFS GDL
Sbjct: 61  KSLLLHRSFSEKPNF---QTRLETFLMESQNFPNNHHSLPCPESDFFSSQIRRVFSTGDL 120

Query: 202 QNSGRGRSENGSSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLAD 261
           QNSG GRS   SSLMEEGNFKVGRYSAEERKERI KYRAKRTQRN+NKTIKYACRKTLAD
Sbjct: 121 QNSGNGRS---SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLAD 180

Query: 262 NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWV 288
           NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFW+
Sbjct: 181 NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWI 207

BLAST of Cp4.1LG13g01430 vs. TrEMBL
Match: B9GWU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.3e-53
Identity = 152/323 (47.06%), Postives = 200/323 (61.92%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFN 60
           MSSDL++       +S +  S+ ++V P   +L FFSDP+SP F DS+ID+L    +E +
Sbjct: 1   MSSDLYV-----LDASFYNHSTPEIVSPDGGDL-FFSDPFSP-FCDSSIDIL----QESS 60

Query: 61  SNSNSNPNLNPNPNPLDQFIP-----------MQGLSLSHGNDFPLLADPSSSSSN--GF 120
           +N N+   L  N N +D F P           ++ LSL   N F  LA+  + +S    F
Sbjct: 61  NNQNNQCPLE-NSNSVDSFSPSILSSSPPSHQLENLSLYQTNHFQALANGENLASGYTNF 120

Query: 121 QNLSNFHLNS--------NSFNQ----PLCFDPIQNAAA--DKSFLHRSFSEKPGFLGGQ 180
             L    + +        +++NQ    P  +  ++N A    +S+   SF  KPGFL  Q
Sbjct: 121 PGLDALEVKTEECQLSFKSTYNQHSFMPHSYSSVENVAKMMQRSYSSNSFEGKPGFLF-Q 180

Query: 181 SRLESLLMDSPNFPNQSLPCPESDFFSSQIRRVFSAGDLQNSGRG-----RSENG----- 240
            R ++LL +SPN+ +Q+L  PE++F + Q+RRV+S GDLQN  R      RS +      
Sbjct: 181 PRFDTLL-ESPNYQSQALSSPENNFLAGQLRRVYSTGDLQNINRTTHATERSLSSPLATE 240

Query: 241 SSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFAR 287
           SS +EE NFKVGRYSAEERKERISKYRAKRTQRN+ KTIKYACRKTLADNRPRIRGRFAR
Sbjct: 241 SSFIEESNFKVGRYSAEERKERISKYRAKRTQRNFTKTIKYACRKTLADNRPRIRGRFAR 300

BLAST of Cp4.1LG13g01430 vs. TrEMBL
Match: M5WRR8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017365mg PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.9e-49
Identity = 151/319 (47.34%), Postives = 190/319 (59.56%), Query Frame = 1

Query: 2   SSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFNS 61
           SSDL++  DS      FR SSS  +   + + QFFS+P+SP FSD  ID+L  +++   S
Sbjct: 3   SSDLYVLDDS-----FFRHSSSSEMASYEPD-QFFSEPFSP-FSD--IDILQAISDH-QS 62

Query: 62  NSNSNPNLNPNPNPLDQFIP-----------MQGLSLSHGNDFPLLADPSSSSSNGFQNL 121
           N N   N + + N LDQ  P           ++ LSL        L    ++ +NG  N 
Sbjct: 63  NQNPVENQSHHNNSLDQSSPTILSSSPPSYQLESLSLCQATHLNPLDQNCTNLANGLPNF 122

Query: 122 SNF----------HL--NSNSFNQPLCFDPIQNAAAD-------KSFLHRSFSEKPGFLG 181
           S F          HL  + N++N    F P   + A+       +SF   SF  KPG + 
Sbjct: 123 SAFDALEVKTEQCHLAFDQNAYNNSQVFGPHSYSGAENVAKFMQRSFSSNSFDGKPGVVF 182

Query: 182 GQSRLESLLMDSPNFPNQSLPCPESDFFSSQIRRVFSAGDLQNSGRGRSENGSSLMEEG- 241
            Q   +SL M+S  F NQ+L  PE+ F + Q+RRV S GDLQN    R+   SS+MEE  
Sbjct: 183 -QPCFDSL-MESSTFQNQALSSPENSFLAGQMRRVSSTGDLQNFRTARNPRESSVMEEAA 242

Query: 242 -NFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGE 288
            NFK+GRYSAEERKERISKYRAKR+QRN+NKTIKYACRKTLADNRPRIRGRFARNDE GE
Sbjct: 243 ANFKMGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDETGE 302

BLAST of Cp4.1LG13g01430 vs. TrEMBL
Match: B9GKF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-46
Identity = 145/328 (44.21%), Postives = 196/328 (59.76%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFN 60
           MSSDL++       +S +  SS ++V P + +L FFSDP+SP F DS+ID+L    +EF+
Sbjct: 1   MSSDLYV-----LDASFYHLSSPEIVSP-EGDL-FFSDPFSP-FRDSSIDIL----QEFS 60

Query: 61  SNSNS-------------NPNLNPNPNPLDQFIPMQGLSLSHGNDFPLLADPSSSSSNGF 120
           +N N              NP++  +  P  Q   ++ LSL + N    LA+ S + ++G+
Sbjct: 61  NNQNIQCPVENSKFVDSFNPSILSSSPPSHQ---LENLSL-YTNHLQALAN-SENLADGY 120

Query: 121 QNLSNFHL----------------NSNSFNQPLCFDPIQNAAA--DKSFLHRSFSEKPGF 180
            N                      N  SF  P  +  ++N A    +S+   SF   PGF
Sbjct: 121 GNFPGLDALGVKTEECQVGFDPSYNQQSF-MPHSYSGVENVAKMMQRSYSSNSFEGNPGF 180

Query: 181 LGGQSRLESLLMDSPNFPNQSLPCPESDFFSSQIRRVFSAGDLQNSGRG-----RSENG- 240
           L  Q R ++L  +SPN+  Q+L  PE++F + Q+RRV SAGDLQ+  +      RS +  
Sbjct: 181 LF-QPRFDTLF-ESPNYQGQALSLPENNFLAGQLRRVCSAGDLQSINKTPHTTQRSFSSP 240

Query: 241 ----SSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRG 288
               SS +E+ NFKVGRYSAEERKERISKYRAKR QRN++KTIKYACRKTLADNRPRIRG
Sbjct: 241 LATESSFIEDSNFKVGRYSAEERKERISKYRAKRNQRNFSKTIKYACRKTLADNRPRIRG 300

BLAST of Cp4.1LG13g01430 vs. TrEMBL
Match: A0A0L9VPZ0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g016200 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.7e-46
Identity = 142/308 (46.10%), Postives = 174/308 (56.49%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFN 60
           MSSDL+ +  +  + S     SSD V     +L F SD + P F +S  +V     +  N
Sbjct: 1   MSSDLYSYDTTFHTHSNSDFLSSDGV----GDLPFLSDSF-PFFPNSPSNVAQ---DNSN 60

Query: 61  SNSNSNPNLNPNPNPLDQFIP----MQGLSLSHGNDFPLLADPSSSSSNGFQNLSNFHLN 120
           SNSNS P+L+P       F P    ++ LSL H N    L++   + +N F   S F  +
Sbjct: 61  SNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSN-GQNLANEFATFSAFDAS 120

Query: 121 SNS-----------FNQPLCFDPIQNAAADKSFLHRSFSE-----KPGFLGGQSRLESLL 180
                         + Q L       A     ++HRSFS      KPGFL         L
Sbjct: 121 EVKTEEAQLGVDCVYAQQLLPHSYSGAENFSRYMHRSFSSNSFEAKPGFLS--QPYTDTL 180

Query: 181 MDSPNFPNQSLPCPESDFFSSQIRRVFSAGDLQNSGRGR-SENGSSLMEEGNFKVGRYSA 240
           +DSP F    L  PE   F+ Q+RRV S GDLQN    R S   + L+EE NFKVGRYSA
Sbjct: 181 VDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSA 240

Query: 241 EERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTRE 288
           EERKERISKYRAKRTQRN+NKTIKYACRKTLADNRPRIRGRFARNDE  + PKA+CSTR+
Sbjct: 241 EERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDNPKASCSTRD 297

BLAST of Cp4.1LG13g01430 vs. TAIR10
Match: AT5G41380.1 (AT5G41380.1 CCT motif family protein)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-34
Identity = 123/293 (41.98%), Postives = 164/293 (55.97%), Query Frame = 1

Query: 2   SSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFNS 61
           S+D +I   SSSSSS    +SS  +F SD      +D +  N   S  + LN + + F  
Sbjct: 4   STDFYIFDGSSSSSSSVFRNSSPDMFSSDTTTT--TDLFCNNELYSVEESLN-IFDHFTP 63

Query: 62  N---SNSNPNLNPNPNPLDQFIPMQGLSLSHGNDFPLLADPSSSSSNGFQNLSNFHLNSN 121
               S+S P+       L Q IP  GL       +P  +D   S +   +   + H  + 
Sbjct: 64  QHILSSSPPSDLLGTLSLSQHIPT-GL-------YPNFSDFQISDAVKTEKFFDGH--NQ 123

Query: 122 SFNQPLCFDPIQNAAADKSFLHRSFSEKPGFLGGQSRL--ESLLMDSPNFPNQSLPCPES 181
           +      +  I+N+     ++ RSFS      G Q+++     +MDS N    +L  PE+
Sbjct: 124 AATMARSYSTIENSGR---YMQRSFSSN-SVEGKQTQVPFNIPMMDSSNLSYNNLSSPEN 183

Query: 182 DFFSSQIRRVFSAGDLQNSGRGRSENGSSLM---EEGNFKVGRYSAEERKERISKYRAKR 241
            FFSSQ+RRV+S GDLQN+   +  + +S M   EE NFKVGRYSAEERKE+ISKYRAKR
Sbjct: 184 AFFSSQMRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKR 243

Query: 242 TQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFW 287
            QRN+ KTIKYACRKTLAD+RPRIRGRFARNDE  EIP       E+D+ + W
Sbjct: 244 NQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVEIPNI-----EDDDSELW 274

BLAST of Cp4.1LG13g01430 vs. TAIR10
Match: AT1G63820.1 (AT1G63820.1 CCT motif family protein)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-33
Identity = 122/302 (40.40%), Postives = 151/302 (50.00%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLNPLAEEFN 60
           M SDL+I  D SSSSS    S+   +F SD      +D Y  N        LNP  ++  
Sbjct: 1   MDSDLYIF-DGSSSSSSICHSTDPDMFSSDTTTT--TDLYCNN------PYLNPSMDDHQ 60

Query: 61  SNSNSNPNLNPNPNPLDQFIPMQGLSLSHGNDFPLLADPSSSSSNGFQNLSNFHLNSNSF 120
           S S             + F P     LS       L   + + +N F N S       +F
Sbjct: 61  SLSF-----------FESFTPTTHHILSSSPPISQLQTLTLTHTNSFPNFSG----FENF 120

Query: 121 NQPLCFDPIQNAAADKSFLHRSFSEKPGFLGGQSRLESLLMDSPNFPNQSL-PCPESDFF 180
           +       + N+  D  F+                      DS NF NQ+L   PE  FF
Sbjct: 121 DTVKTEQLLFNSPFDAPFME---------------------DSSNFQNQNLLNSPEDSFF 180

Query: 181 SSQIRRVFSAGDLQNSGR---GRSENGSSLM-----------EEGNFKVGRYSAEERKER 240
           S  +RRV+S GDLQN GR   G+    S L            +E + +VGRYS+EERKE+
Sbjct: 181 SDHMRRVYSTGDLQNLGRDFTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEK 240

Query: 241 ISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACS-TREEDEDD 287
           ISKYRAKRTQRN+ KTIKYACRKTLADNRPR+RGRFARNDE  E PK A S TR+E++DD
Sbjct: 241 ISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEVFENPKIASSFTRQENDDD 257

BLAST of Cp4.1LG13g01430 vs. TAIR10
Match: AT2G33350.1 (AT2G33350.1 CCT motif family protein)

HSP 1 Score: 98.6 bits (244), Expect = 6.7e-21
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 1

Query: 148 GFLGGQSRLESLLMDSPNFPNQSLPCPESDFFS-SQIRRVFSAGDLQNSGRGRSENGSSL 207
           G+L G   + S + + P+ P          FF    I+R+F+  DLQ +  G +EN S L
Sbjct: 220 GYLPGNIHVGSEI-NKPHDPLMDFQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSHL 279

Query: 208 ----------------MEEGNF-KVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKT 267
                           +E+    KVG+ S E+RKE+I +Y  KR +RN+NK IKYACRKT
Sbjct: 280 VTPQAHPALGPVDINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKT 339

Query: 268 LADNRPRIRGRFARNDEPGEIPKAACSTREEDEDD 285
           LAD+RPR+RGRFA+NDE GE  + A S+  +DED+
Sbjct: 340 LADSRPRVRGRFAKNDEFGEPNRQAFSSHHDDEDE 373

BLAST of Cp4.1LG13g01430 vs. TAIR10
Match: AT5G59990.1 (AT5G59990.1 CCT motif family protein)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-20
Identity = 63/146 (43.15%), Postives = 78/146 (53.42%), Query Frame = 1

Query: 125 CFDPIQNAAADKSF-LHRSFSEKPGFLGGQSRLESLLMDSPNFPNQSLPCPESDFFSSQI 184
           C  P    +  +S  + RS S   GF G  +     + D                    +
Sbjct: 78  CDSPSSMGSGGESLVMQRSVSSHNGFSGNYTAAHDFVNDD----------------DGPV 137

Query: 185 RRVFSAGDLQNSGRGRSE---NGSSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNK 244
           RR  SAGDL  S R  S    + S+ + EG  K  +YS EE+KE+I KYR+KR  RN+NK
Sbjct: 138 RRALSAGDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNK 197

Query: 245 TIKYACRKTLADNRPRIRGRFARNDE 267
            IKY CRKTLAD+RPRIRGRFARNDE
Sbjct: 198 RIKYECRKTLADSRPRIRGRFARNDE 207

BLAST of Cp4.1LG13g01430 vs. TAIR10
Match: AT1G04500.1 (AT1G04500.1 CCT motif family protein)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-20
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 1

Query: 168 NQSLPCPESDFFSSQIRRVFSAGDLQNSGRGRSENGSSL---------------MEEGNF 227
           N  L CP+       I+ +F+ GD    G    EN + +               +++ +F
Sbjct: 224 NGGLFCPDP------IKPIFNPGDHHLQGLDGVENQNHMVAQPVLPQLGTEITGLDDPSF 283

Query: 228 -KVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIP 285
            KVG+ SAE+RKE+I +Y  KR +RN++K IKYACRKTLAD+RPR+RGRFA+NDE GE  
Sbjct: 284 NKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 343

BLAST of Cp4.1LG13g01430 vs. NCBI nr
Match: gi|778699549|ref|XP_011654732.1| (PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.6e-109
Identity = 231/306 (75.49%), Postives = 247/306 (80.72%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLN------- 60
           MSSDLFIHGDSSSSSSLFRCSSSDLVFPS+A+LQFFSDPYSPNFSDSAID+LN       
Sbjct: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSIPSQSQ 60

Query: 61  ---PLAEEFNSNSNSNPNLNPNPNPLDQFIPMQGLSLSHGN-DFPLLADPSSSSSNGFQN 120
              PL +EFNSN+NS          +D FIPMQGLSLSH   DFPLL +PS SSSNGFQN
Sbjct: 61  QENPLLDEFNSNNNSIS--------VDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQN 120

Query: 121 LSNFHLNSNSF-----NQPLCFDPIQNAAADKSFL-HRSFSEKPGFLGGQSRLESLLMDS 180
           L+NF + +        N PLCFDP +N   DKS L HRSFSEKP F   Q+RLE+ LM+S
Sbjct: 121 LTNFDVKNEESLLGFNNPPLCFDPPENV--DKSLLLHRSFSEKPNF---QTRLETFLMES 180

Query: 181 PNFPNQ--SLPCPESDFFSSQIRRVFSAGDLQNSGRGRSENGSSLMEEGNFKVGRYSAEE 240
            NFPN   SLPCPESDFFSSQIRRVFS GDLQNSG GRS   SSLMEEGNFKVGRYSAEE
Sbjct: 181 QNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRS---SSLMEEGNFKVGRYSAEE 240

Query: 241 RKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREED 288
           RKERI KYRAKRTQRN+NKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREED
Sbjct: 241 RKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREED 290

BLAST of Cp4.1LG13g01430 vs. NCBI nr
Match: gi|449452462|ref|XP_004143978.1| (PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativus])

HSP 1 Score: 399.8 bits (1026), Expect = 4.0e-108
Identity = 231/307 (75.24%), Postives = 247/307 (80.46%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLN------- 60
           MSSDLFIHGDSSSSSSLFRCSSSDLVFPS+A+LQFFSDPYSPNFSDSAID+LN       
Sbjct: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSIPSQSQ 60

Query: 61  ---PLAEEFNSNSNSNPNLNPNPNPLDQFIPMQGLSLSHGN-DFPLLADPSSSSSNGFQN 120
              PL +EFNSN+NS          +D FIPMQGLSLSH   DFPLL +PS SSSNGFQN
Sbjct: 61  QENPLLDEFNSNNNSIS--------VDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQN 120

Query: 121 LSNFHLNSNSF-----NQPLCFDPIQNAAADKSFL-HRSFSEKPGFLGGQSRLESLLMDS 180
           L+NF + +        N PLCFDP +N   DKS L HRSFSEKP F   Q+RLE+ LM+S
Sbjct: 121 LTNFDVKNEESLLGFNNPPLCFDPPENV--DKSLLLHRSFSEKPNF---QTRLETFLMES 180

Query: 181 PNFPNQ--SLPCPESDFFSSQIRRVFSAGDLQ-NSGRGRSENGSSLMEEGNFKVGRYSAE 240
            NFPN   SLPCPESDFFSSQIRRVFS GDLQ NSG GRS   SSLMEEGNFKVGRYSAE
Sbjct: 181 QNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS---SSLMEEGNFKVGRYSAE 240

Query: 241 ERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE 288
           ERKERI KYRAKRTQRN+NKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE
Sbjct: 241 ERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE 291

BLAST of Cp4.1LG13g01430 vs. NCBI nr
Match: gi|659073898|ref|XP_008437312.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 5.3e-105
Identity = 226/307 (73.62%), Postives = 243/307 (79.15%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLN------- 60
           MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDA+LQFFSDPYSPNFSDSAID+LN       
Sbjct: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSIPSQSQ 60

Query: 61  ---PLAEEFNSNSNSNPNLNPNPNPLDQFIPMQGLSLSHGN-DFPLLADPSSSSSNGFQN 120
              PL +EFNSN++ +         +D FIPMQGLSLSH   DF LL +PS SSSNGFQN
Sbjct: 61  QENPLPDEFNSNNSIS---------IDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQN 120

Query: 121 LSNFHLNSNSF-----NQPLC-FDPIQNAAADKSFL-HRSFSEKPGFLGGQSRLESLLMD 180
           L+NF + +        N PLC  DP +N   DKS L HRSFSEKP F   Q+RLE+ LM+
Sbjct: 121 LTNFDVKNEESLLGFNNPPLCSLDPPENV--DKSLLLHRSFSEKPNF---QTRLETFLME 180

Query: 181 SPNFPNQ--SLPCPESDFFSSQIRRVFSAGDLQNSGRGRSENGSSLMEEGNFKVGRYSAE 240
           S  FPN   SLPCPESDFFSSQIRRVFS GDLQNSG GRS    SLMEEGNFKVGRYSAE
Sbjct: 181 SQKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRS----SLMEEGNFKVGRYSAE 240

Query: 241 ERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE 288
           ERKERI KYRAKRTQRN+NKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE
Sbjct: 241 ERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREE 289

BLAST of Cp4.1LG13g01430 vs. NCBI nr
Match: gi|659073896|ref|XP_008437311.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 1.3e-103
Identity = 226/308 (73.38%), Postives = 243/308 (78.90%), Query Frame = 1

Query: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDAELQFFSDPYSPNFSDSAIDVLN------- 60
           MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDA+LQFFSDPYSPNFSDSAID+LN       
Sbjct: 1   MSSDLFIHGDSSSSSSLFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSIPSQSQ 60

Query: 61  ---PLAEEFNSNSNSNPNLNPNPNPLDQFIPMQGLSLSHGN-DFPLLADPSSSSSNGFQN 120
              PL +EFNSN++ +         +D FIPMQGLSLSH   DF LL +PS SSSNGFQN
Sbjct: 61  QENPLPDEFNSNNSIS---------IDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQN 120

Query: 121 LSNFHLNSNSF-----NQPLC-FDPIQNAAADKSFL-HRSFSEKPGFLGGQSRLESLLMD 180
           L+NF + +        N PLC  DP +N   DKS L HRSFSEKP F   Q+RLE+ LM+
Sbjct: 121 LTNFDVKNEESLLGFNNPPLCSLDPPENV--DKSLLLHRSFSEKPNF---QTRLETFLME 180

Query: 181 SPNFPNQ--SLPCPESDFFSSQIRRVFSAGDLQ-NSGRGRSENGSSLMEEGNFKVGRYSA 240
           S  FPN   SLPCPESDFFSSQIRRVFS GDLQ NSG GRS    SLMEEGNFKVGRYSA
Sbjct: 181 SQKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS----SLMEEGNFKVGRYSA 240

Query: 241 EERKERISKYRAKRTQRNYNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTRE 288
           EERKERI KYRAKRTQRN+NKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTRE
Sbjct: 241 EERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTRE 290

BLAST of Cp4.1LG13g01430 vs. NCBI nr
Match: gi|700194900|gb|KGN50077.1| (hypothetical protein Csa_5G152920 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 4.3e-78
Identity = 168/215 (78.14%), Postives = 178/215 (82.79%), Query Frame = 1

Query: 82  MQGLSLSHGN-DFPLLADPSSSSSNGFQNLSNFHLNSNSF-----NQPLCFDPIQNAAAD 141
           MQGLSLSH   DFPLL +PS SSSNGFQNL+NF + +        N PLCFDP +N   D
Sbjct: 1   MQGLSLSHPTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPENV--D 60

Query: 142 KSFL-HRSFSEKPGFLGGQSRLESLLMDSPNFPNQ--SLPCPESDFFSSQIRRVFSAGDL 201
           KS L HRSFSEKP F   Q+RLE+ LM+S NFPN   SLPCPESDFFSSQIRRVFS GDL
Sbjct: 61  KSLLLHRSFSEKPNF---QTRLETFLMESQNFPNNHHSLPCPESDFFSSQIRRVFSTGDL 120

Query: 202 QNSGRGRSENGSSLMEEGNFKVGRYSAEERKERISKYRAKRTQRNYNKTIKYACRKTLAD 261
           QNSG GRS   SSLMEEGNFKVGRYSAEERKERI KYRAKRTQRN+NKTIKYACRKTLAD
Sbjct: 121 QNSGNGRS---SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLAD 180

Query: 262 NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWV 288
           NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFW+
Sbjct: 181 NRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWI 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COL1_ARATH7.4e-0645.00Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KNV6_CUCSA3.0e-7878.14Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1[more]
B9GWU0_POPTR4.3e-5347.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1[more]
M5WRR8_PRUPE4.9e-4947.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017365mg PE=4 SV=1[more]
B9GKF0_POPTR2.3e-4644.21Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1[more]
A0A0L9VPZ0_PHAAN8.7e-4646.10Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g016200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G41380.13.1e-3441.98 CCT motif family protein[more]
AT1G63820.12.0e-3340.40 CCT motif family protein[more]
AT2G33350.16.7e-2141.94 CCT motif family protein[more]
AT5G59990.13.3e-2043.15 CCT motif family protein[more]
AT1G04500.13.3e-2044.36 CCT motif family protein[more]
Match NameE-valueIdentityDescription
gi|778699549|ref|XP_011654732.1|1.6e-10975.49PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativ... [more]
gi|449452462|ref|XP_004143978.1|4.0e-10875.24PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativ... [more]
gi|659073898|ref|XP_008437312.1|5.3e-10573.62PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo][more]
gi|659073896|ref|XP_008437311.1|1.3e-10373.38PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo][more]
gi|700194900|gb|KGN50077.1|4.3e-7878.14hypothetical protein Csa_5G152920 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g01430.1Cp4.1LG13g01430.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 222..264
score: 2.8
IPR010402CCT domainPROFILEPS51017CCTcoord: 222..264
score: 15
NoneNo IPR availablePANTHERPTHR31319FAMILY NOT NAMEDcoord: 24..286
score: 1.5
NoneNo IPR availablePANTHERPTHR31319:SF20CCT MOTIF FAMILY PROTEINcoord: 24..286
score: 1.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g01430Cp4.1LG05g03240Cucurbita pepo (Zucchini)cpecpeB226