CmoCh02G014700 (gene) Cucurbita moschata (Rifu)

NameCmoCh02G014700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger protein CONSTANS-LIKE 3
LocationCmo_Chr02 : 8625409 .. 8626623 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCTCATCAAAACCCACTCCCTGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAGTTATCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGATGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAACAACAACAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGGTATGGCATGTTATATATATTTTGGGGAGAAACCCATTCACGGTTGGTAGTAAATGTTTGAATATGGGGGCAGAATTCAAGCATGGGACGCTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCAGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGGTTAGTATAGCAGAACTGAATTCAAAAACAAAAACGGTTTTCAGAGATTGAGGATGCCGCATTAATGGGGAGTTTGGGATGAACTGAACAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCCGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGATTTCTGGGTAAAAAATCTCTTCTTTTTCTTTTTTATTTTATTTATTTAATGAGAAAAAAAAAATTCATATCTTGTTTGAATGCAGATGGAACGGTTGCATGCAGGGGAAGAAGTGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCAGCTGGAAGGAG

mRNA sequence

ATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCTCATCAAAACCCACTCCCTGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAGTTATCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGATGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAACAACAACAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGCTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCAGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCCGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGATTTCTGGATGGAACGGTTGCATGCAGGGGAAGAAGTGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCAGCTGGAAGGAG

Coding sequence (CDS)

ATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCTCATCAAAACCCACTCCCTGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAGTTATCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGATGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAACAACAACAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGCTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCAGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCCGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGATTTCTGGATGGAACGGTTGCATGCAGGGGAAGAAGTGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGA
BLAST of CmoCh02G014700 vs. Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 8.2e-06
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1

Query: 229 SAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDE 278
           S+ +R+ R+ +YR KR+ R F KTI+YA RK  A++RPRI+GRFA+  E
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE 329

BLAST of CmoCh02G014700 vs. TrEMBL
Match: A0A0A0KNV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.7e-69
Identity = 163/259 (62.93%), Postives = 180/259 (69.50%), Query Frame = 1

Query: 85  PIPELSLIPD-SCSSPNGFQNLSNFDVKNEESHLGFNQPPLCFDPSDHNNNNNNNNAATV 144
           P P+  L+P+ S SS NGFQNL+NFDVKNEES LGFN PPLCFDP ++           V
Sbjct: 9   PTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPEN-----------V 68

Query: 145 DKSLL-HRS---------RMESLLMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDL 204
           DKSLL HRS         R+E+ LMES   NFPN   SLPC ES+FFSSQIRRVFSTGDL
Sbjct: 69  DKSLLLHRSFSEKPNFQTRLETFLMES--QNFPNNHHSLPCPESDFFSSQIRRVFSTGDL 128

Query: 205 QNSSMGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNK 264
           QNS  GRS               +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNK
Sbjct: 129 QNSGNGRS---------------SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNK 188

Query: 265 TIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDDFWMERLHAGE------ 319
           TIKYACRKTLADNRPRIRGRFARNDEPG+  K + STREEDEDDFW+E LH  E      
Sbjct: 189 TIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIR 239

BLAST of CmoCh02G014700 vs. TrEMBL
Match: W9QPI7_9ROSA (Zinc finger protein CONSTANS-LIKE 3 OS=Morus notabilis GN=L484_024243 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.8e-42
Identity = 153/374 (40.91%), Postives = 192/374 (51.34%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+   S    SSS          +++  S+A+  F     S  FSD  ID  +  
Sbjct: 1   MSSDLFIFDGSFYHHSSSP---------EMLVSSEAELFFNDNEFSSPFSDSAID--ILQ 60

Query: 61  PHQNPLPADESNSNSNSNSVDQLIPIPELSLIPDSCSS--------PNGFQNLSNFDVKN 120
              +P+     + N N N    L+  P++S       S         NG  NL  F +K 
Sbjct: 61  ALSDPIQQQSQSQNQNQNP---LLDQPQISPPTQELQSLNLYHPNLENGIANLDAFQIKT 120

Query: 121 EESHLG-FNQPPLCFDPSDHNNNNNNNN-------------------------AATVDKS 180
           EE HLG F      ++ +++N+ NN+ N                         A  + +S
Sbjct: 121 EECHLGTFENINSFYNNNENNDYNNSYNYSISGSDHSQVVQFGPHSYSGVQNVAKFMQRS 180

Query: 181 LLHRSRMESLLMESVSPNFPNQSLPCS-----ESEFFSSQIRRVFSTGDLQNSSMGRSRT 240
                 + S  +ES S  F NQ+   S      +   +  +RRV STGDLQ  + G +RT
Sbjct: 181 CSSSGFLFSPSVES-SSTFGNQASFSSPENNNNNAILNGHMRRVCSTGDLQGQNFGTTRT 240

Query: 241 GCGQGSFSSPL--SENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRK 300
              Q SFSSPL  SE+  +EE NFKVG+YSAEERKERISKYRAKR  RNFNKTIKYACRK
Sbjct: 241 T--QRSFSSPLANSESSFMEEANFKVGKYSAEERKERISKYRAKRTLRNFNKTIKYACRK 300

Query: 301 TLADNRPRIRGRFARNDEP--GDSSKPSSSTREEDEDDFWMERLHAGEE----------- 319
           TLADNRPRIRGRFARNDEP  G++ K  SS+R+EDEDD W+E LH  EE           
Sbjct: 301 TLADNRPRIRGRFARNDEPGFGETPKAPSSSRDEDEDDLWLEGLHEEEEDNETAMRGQFL 357

BLAST of CmoCh02G014700 vs. TrEMBL
Match: B9GWU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 143/345 (41.45%), Postives = 181/345 (52.46%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDL+V            +S +  S  ++V P   D  F +   SP F D  ID+    
Sbjct: 1   MSSDLYV----------LDASFYNHSTPEIVSPDGGDL-FFSDPFSP-FCDSSIDI---- 60

Query: 61  PHQNPLPADESNSNS-----NSNSVDQLIPI------PELSLIPDSCSSPNGFQNLSN-- 120
                L    +N N+     NSNSVD   P       P   L   S    N FQ L+N  
Sbjct: 61  -----LQESSNNQNNQCPLENSNSVDSFSPSILSSSPPSHQLENLSLYQTNHFQALANGE 120

Query: 121 --------------FDVKNEESHLGFNQPPLCFDPSDHNNNNNNNNAATVDKS------- 180
                          +VK EE  L F           H+ ++  N A  + +S       
Sbjct: 121 NLASGYTNFPGLDALEVKTEECQLSFKSTYNQHSFMPHSYSSVENVAKMMQRSYSSNSFE 180

Query: 181 ----LLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTG 240
                L + R ++LL    SPN+ +Q+L   E+ F + Q+RRV+STGDLQN +     T 
Sbjct: 181 GKPGFLFQPRFDTLLE---SPNYQSQALSSPENNFLAGQLRRVYSTGDLQNINRTTHAT- 240

Query: 241 CGQGSFSSPLS-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTL 300
             + S SSPL+ E+  +EE NFKVGRYSAEERKERISKYRAKR QRNF KTIKYACRKTL
Sbjct: 241 --ERSLSSPLATESSFIEESNFKVGRYSAEERKERISKYRAKRTQRNFTKTIKYACRKTL 300

Query: 301 ADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDDFWMERLHAGEE 307
           ADNRPRIRGRFARNDE G+  K + STR+EDE++ W + LH  E+
Sbjct: 301 ADNRPRIRGRFARNDETGEIPKVACSTRDEDEEELWFDGLHEEED 318

BLAST of CmoCh02G014700 vs. TrEMBL
Match: V4TM74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021189mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 116/239 (48.54%), Postives = 146/239 (61.09%), Query Frame = 1

Query: 72  NSNSNSNSVDQLIPIPELSLIPDSCSSPNGFQNLSNFDVKNEESHLGFNQPPLCFDPSDH 131
           +S+S+ N + Q     E  ++P S S   G +N++ +  ++  S+    +P   F P   
Sbjct: 100 DSSSSYNQIQQ-----EPLVLPHSYS---GVENVAKYMQRSYSSNCFDGKPGFSFQP--- 159

Query: 132 NNNNNNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDL 191
                               R +S+L    SPNF NQ+L   E+ FF+ Q+RRV STGDL
Sbjct: 160 --------------------RFDSVLE---SPNFHNQALSSPENSFFAGQMRRVCSTGDL 219

Query: 192 QNSSMGRSRTGCGQGSFSSPLS-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFN 251
           QN+ +        Q SFSSPL+ E+  +EE NFKVGRYSAEERKERI KYRAKR QRNFN
Sbjct: 220 QNTKIPHK----SQRSFSSPLATESSFMEEANFKVGRYSAEERKERILKYRAKRNQRNFN 279

Query: 252 KTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDDFWMERLHAGEEVYG 310
           KTIKYACRKTLADNRPRIRGRFARNDE GD  K + S R+EDED+ W++ L   EE  G
Sbjct: 280 KTIKYACRKTLADNRPRIRGRFARNDEAGDVPKAAYSARDEDEDELWLDGLQQEEEEDG 300

BLAST of CmoCh02G014700 vs. TrEMBL
Match: B9GKF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 139/353 (39.38%), Postives = 195/353 (55.24%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDL---- 60
           MSSDL+V            +S +  S+ ++V P + D  F +   SP F D  ID+    
Sbjct: 1   MSSDLYV----------LDASFYHLSSPEIVSP-EGDL-FFSDPFSP-FRDSSIDILQEF 60

Query: 61  ----HVYYPHQNPLPADESN-----SNSNSNSVDQL-IPIPELSLIPDSCSSPNGFQNLS 120
               ++  P +N    D  N     S+  S+ ++ L +    L  + +S +  +G+ N  
Sbjct: 61  SNNQNIQCPVENSKFVDSFNPSILSSSPPSHQLENLSLYTNHLQALANSENLADGYGNFP 120

Query: 121 NFD---VKNEESHLGFNQP--PLCFDPSDHNNNNN---------NNNAATVDKSLLHRSR 180
             D   VK EE  +GF+       F P  ++   N         ++N+   +   L + R
Sbjct: 121 GLDALGVKTEECQVGFDPSYNQQSFMPHSYSGVENVAKMMQRSYSSNSFEGNPGFLFQPR 180

Query: 181 MESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPL 240
            ++L     SPN+  Q+L   E+ F + Q+RRV S GDLQ+ +     T   Q SFSSPL
Sbjct: 181 FDTLFE---SPNYQGQALSLPENNFLAGQLRRVCSAGDLQSINKTPHTT---QRSFSSPL 240

Query: 241 S-ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGR 300
           + E+  +E+ NFKVGRYSAEERKERISKYRAKR QRNF+KTIKYACRKTLADNRPRIRGR
Sbjct: 241 ATESSFIEDSNFKVGRYSAEERKERISKYRAKRNQRNFSKTIKYACRKTLADNRPRIRGR 300

Query: 301 FARNDEPGDSSKPSSSTREEDEDDFWMERLHAGEE---------VYGQVQFQY 316
           FARN+E G++ K + STR+EDE++ W++ LH  E+          + Q QFQY
Sbjct: 301 FARNEETGETPKVACSTRDEDEEELWLDGLHEEEDDGAIRGSPGGFAQPQFQY 334

BLAST of CmoCh02G014700 vs. TAIR10
Match: AT1G63820.1 (AT1G63820.1 CCT motif family protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-34
Identity = 128/315 (40.63%), Postives = 169/315 (53.65%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           M SDL++   SSSSSS   S+     +SD    +D         C+  + +  +D H   
Sbjct: 1   MDSDLYIFDGSSSSSSICHSTDPDMFSSDTTTTTDL-------YCNNPYLNPSMDDH--- 60

Query: 61  PHQNPLPADESNSNSNSNSVDQLIPIPELSLIPDSCSSPNGFQNLSNFDVKNEESHLGFN 120
                L   ES + +  + +    PI +L  +  + +  N F N S F+           
Sbjct: 61  ---QSLSFFESFTPTTHHILSSSPPISQLQTL--TLTHTNSFPNFSGFE----------- 120

Query: 121 QPPLCFDPSDHNNNNNNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCS-ESEFFS 180
                            N      + LL  S  ++  ME  S NF NQ+L  S E  FFS
Sbjct: 121 -----------------NFDTVKTEQLLFNSPFDAPFMED-SSNFQNQNLLNSPEDSFFS 180

Query: 181 SQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGSL------EEGNFKVGRYSAEER 240
             +RRV+STGDLQN  +GR  TG  Q S+SSPL+   S       +E + +VGRYS+EER
Sbjct: 181 DHMRRVYSTGDLQN--LGRDFTG--QRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEER 240

Query: 241 KERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSS-TREED 300
           KE+ISKYRAKR QRNF KTIKYACRKTLADNRPR+RGRFARNDE  ++ K +SS TR+E+
Sbjct: 241 KEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEVFENPKIASSFTRQEN 267

Query: 301 EDDFW-MERLHAGEE 307
           +DD W ++ LH  EE
Sbjct: 301 DDDLWNLDGLHEEEE 267

BLAST of CmoCh02G014700 vs. TAIR10
Match: AT5G41380.1 (AT5G41380.1 CCT motif family protein)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-28
Identity = 123/319 (38.56%), Postives = 169/319 (52.98%), Query Frame = 1

Query: 2   SSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFS-DHGIDLHVYY 61
           S+D ++       SSSSSSS+FR S+ D+ F SD          +  +S +  +++  ++
Sbjct: 4   STDFYIF----DGSSSSSSSVFRNSSPDM-FSSDTTTTTDLFCNNELYSVEESLNIFDHF 63

Query: 62  PHQNPLPADESNSNSNSNSVDQLIPIPELSLIPDSCSSPNGFQNLSNFD----VKNEESH 121
             Q+ L +   +    + S+ Q IP     L P          N S+F     VK E+  
Sbjct: 64  TPQHILSSSPPSDLLGTLSLSQHIPT---GLYP----------NFSDFQISDAVKTEKFF 123

Query: 122 LGFNQPPLCFDPSDHNNNNNNNNAATVDKSLLHRSRMESL----LMESVSPNFPNQSLPC 181
            G NQ            N+      +   + +   + +      +M+S + ++ N S P 
Sbjct: 124 DGHNQAATMARSYSTIENSGRYMQRSFSSNSVEGKQTQVPFNIPMMDSSNLSYNNLSSP- 183

Query: 182 SESEFFSSQIRRVFSTGDLQNS-SMGRSRTGCGQGSFSSPLSENGSL---EEGNFKVGRY 241
            E+ FFSSQ+RRV+STGDLQN+  M RS             SEN ++   EE NFKVGRY
Sbjct: 184 -ENAFFSSQMRRVYSTGDLQNNMEMQRS-------------SENSTMPFSEEQNFKVGRY 243

Query: 242 SAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSST 301
           SAEERKE+ISKYRAKR QRNF KTIKYACRKTLAD+RPRIRGRFARNDE  +        
Sbjct: 244 SAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVE-----IPN 284

Query: 302 REEDEDDFW-MERLHAGEE 307
            E+D+ + W ++ LH  EE
Sbjct: 304 IEDDDSELWKLDGLHEKEE 284

BLAST of CmoCh02G014700 vs. TAIR10
Match: AT5G59990.1 (AT5G59990.1 CCT motif family protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 1

Query: 135 NNNNNAATVDKSLLHRSRMESLLME-SVSPNFPNQSLPCSESEFFSSQ---IRRVFSTGD 194
           N    +++ D      S  ESL+M+ SVS +        +  +F +     +RR  S GD
Sbjct: 70  NGGGGSSSCDSPSSMGSGGESLVMQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGD 129

Query: 195 LQNSSMGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFN 254
           L  SS   S         S+  SE+ ++ EG  K  +YS EE+KE+I KYR+KR  RNFN
Sbjct: 130 LPRSSRRES---------STVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFN 189

Query: 255 KTIKYACRKTLADNRPRIRGRFARNDE 278
           K IKY CRKTLAD+RPRIRGRFARNDE
Sbjct: 190 KRIKYECRKTLADSRPRIRGRFARNDE 207

BLAST of CmoCh02G014700 vs. TAIR10
Match: AT2G33350.1 (AT2G33350.1 CCT motif family protein)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-18
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 1

Query: 163 PNFPNQSLPCSESEFFS-SQIRRVFSTGDLQNSSMG----RSRTGCGQGSFS-SPLSENG 222
           P+ P          FF    I+R+F+  DLQ +  G    +S     Q   +  P+  NG
Sbjct: 235 PHDPLMDFQADNGGFFCPDSIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGPVDING 294

Query: 223 SLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARND 282
             +    KVG+ S E+RKE+I +Y  KR +RNFNK IKYACRKTLAD+RPR+RGRFA+ND
Sbjct: 295 LEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKND 354

Query: 283 EPGDSSKPSSSTREEDEDD 296
           E G+ ++ + S+  +DED+
Sbjct: 355 EFGEPNRQAFSSHHDDEDE 373

BLAST of CmoCh02G014700 vs. TAIR10
Match: AT1G04500.1 (AT1G04500.1 CCT motif family protein)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-18
Identity = 48/84 (57.14%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 213 SENGSLEEGNF-KVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGR 272
           +E   L++ +F KVG+ SAE+RKE+I +Y  KR +RNF+K IKYACRKTLAD+RPR+RGR
Sbjct: 267 TEITGLDDPSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGR 326

Query: 273 FARNDEPGDSSKPSSSTREEDEDD 296
           FA+NDE G+ ++ + S+  ED+DD
Sbjct: 327 FAKNDEFGEPNRQACSSHHEDDDD 350

BLAST of CmoCh02G014700 vs. NCBI nr
Match: gi|778699549|ref|XP_011654732.1| (PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 2.9e-91
Identity = 218/356 (61.24%), Postives = 242/356 (67.98%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSSSS     LFRCS+SDLVFPS+AD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSSSS-----LFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELSLIPD-SCSSPNGFQNLS 120
           P Q    NPL  DE NSN+NS SVD  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPL-LDEFNSNNNSISVDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQNLT 120

Query: 121 NFDVKNEESHLGFNQPPLCFDPSDHNNNNNNNNAATVDKSLL-HRS---------RMESL 180
           NFDVKNEES LGFN PPLCFDP ++           VDKSLL HRS         R+E+ 
Sbjct: 121 NFDVKNEESLLGFNNPPLCFDPPEN-----------VDKSLLLHRSFSEKPNFQTRLETF 180

Query: 181 LMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSE 240
           LMES   NFPN   SLPC ES+FFSSQIRRVFSTGDLQNS  GRS               
Sbjct: 181 LMES--QNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRS--------------- 240

Query: 241 NGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFAR 300
           +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFAR
Sbjct: 241 SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFAR 300

Query: 301 NDEPGDSSKPSSSTREEDEDDFWMERLHAGE------------EVYGQVQFQYCEF 319
           NDEPG+  K + STREEDEDDFW+E LH  E            E+YG++QFQYC F
Sbjct: 301 NDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 322

BLAST of CmoCh02G014700 vs. NCBI nr
Match: gi|449452462|ref|XP_004143978.1| (PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 7.0e-90
Identity = 218/357 (61.06%), Postives = 242/357 (67.79%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSS     SSLFRCS+SDLVFPS+AD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSS-----SSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELSLIPD-SCSSPNGFQNLS 120
           P Q    NPL  DE NSN+NS SVD  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPL-LDEFNSNNNSISVDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQNLT 120

Query: 121 NFDVKNEESHLGFNQPPLCFDPSDHNNNNNNNNAATVDKS-LLHRS---------RMESL 180
           NFDVKNEES LGFN PPLCFDP ++           VDKS LLHRS         R+E+ 
Sbjct: 121 NFDVKNEESLLGFNNPPLCFDPPEN-----------VDKSLLLHRSFSEKPNFQTRLETF 180

Query: 181 LMESVSPNFPN--QSLPCSESEFFSSQIRRVFSTGDL-QNSSMGRSRTGCGQGSFSSPLS 240
           LME  S NFPN   SLPC ES+FFSSQIRRVFSTGDL QNS  GRS              
Sbjct: 181 LME--SQNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS-------------- 240

Query: 241 ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFA 300
            +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFA
Sbjct: 241 -SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFA 300

Query: 301 RNDEPGDSSKPSSSTREEDEDDFWMERLHAGE------------EVYGQVQFQYCEF 319
           RNDEPG+  K + STREEDEDDFW+E LH  E            E+YG++QFQYC F
Sbjct: 301 RNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 323

BLAST of CmoCh02G014700 vs. NCBI nr
Match: gi|659073898|ref|XP_008437312.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 3.9e-88
Identity = 217/357 (60.78%), Postives = 239/357 (66.95%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSSSS     LFRCS+SDLVFPSDAD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSSSS-----LFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELSLIPD-SCSSPNGFQNLS 120
           P Q    NPLP DE NSN NS S+D  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPLP-DEFNSN-NSISIDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQNLT 120

Query: 121 NFDVKNEESHLGFNQPPLC-FDPSDHNNNNNNNNAATVDKSLL-HRS---------RMES 180
           NFDVKNEES LGFN PPLC  DP ++           VDKSLL HRS         R+E+
Sbjct: 121 NFDVKNEESLLGFNNPPLCSLDPPEN-----------VDKSLLLHRSFSEKPNFQTRLET 180

Query: 181 LLMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLS 240
            LMES    FPN   SLPC ES+FFSSQIRRVFSTGDLQNS  GRS              
Sbjct: 181 FLMES--QKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRSSL------------ 240

Query: 241 ENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFA 300
               +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRFA
Sbjct: 241 ----MEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFA 300

Query: 301 RNDEPGDSSKPSSSTREEDEDDFWMERLHAGE------------EVYGQVQFQYCEF 319
           RNDEPG+  K + STREEDEDDFW+E LH  E            E+YG++QFQYC F
Sbjct: 301 RNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 321

BLAST of CmoCh02G014700 vs. NCBI nr
Match: gi|659073896|ref|XP_008437311.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 1.2e-86
Identity = 217/358 (60.61%), Postives = 239/358 (66.76%), Query Frame = 1

Query: 1   MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYY 60
           MSSDLF+HGDSSSS     SSLFRCS+SDLVFPSDAD QF +   SPNFSD  ID+    
Sbjct: 1   MSSDLFIHGDSSSS-----SSLFRCSSSDLVFPSDADLQFFSDPYSPNFSDSAIDILNSI 60

Query: 61  PHQ----NPLPADESNSNSNSNSVDQLIPI---------PELSLIPD-SCSSPNGFQNLS 120
           P Q    NPLP DE NSN NS S+D  IP+         P+  L+P+ S SS NGFQNL+
Sbjct: 61  PSQSQQENPLP-DEFNSN-NSISIDNFIPMQGLSLSHPTPDFHLLPNPSPSSSNGFQNLT 120

Query: 121 NFDVKNEESHLGFNQPPLC-FDPSDHNNNNNNNNAATVDKS-LLHRS---------RMES 180
           NFDVKNEES LGFN PPLC  DP ++           VDKS LLHRS         R+E+
Sbjct: 121 NFDVKNEESLLGFNNPPLCSLDPPEN-----------VDKSLLLHRSFSEKPNFQTRLET 180

Query: 181 LLMESVSPNFPN--QSLPCSESEFFSSQIRRVFSTGDL-QNSSMGRSRTGCGQGSFSSPL 240
            LME  S  FPN   SLPC ES+FFSSQIRRVFSTGDL QNS  GRS             
Sbjct: 181 FLME--SQKFPNNHHSLPCPESDFFSSQIRRVFSTGDLQQNSGNGRS------------- 240

Query: 241 SENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRF 300
                +EEGNFKVGRYSAEERKERI KYRAKR QRNFNKTIKYACRKTLADNRPRIRGRF
Sbjct: 241 ---SLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRF 300

Query: 301 ARNDEPGDSSKPSSSTREEDEDDFWMERLHAGE------------EVYGQVQFQYCEF 319
           ARNDEPG+  K + STREEDEDDFW+E LH  E            E+YG++QFQYC F
Sbjct: 301 ARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF 322

BLAST of CmoCh02G014700 vs. NCBI nr
Match: gi|700194900|gb|KGN50077.1| (hypothetical protein Csa_5G152920 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 5.2e-69
Identity = 163/259 (62.93%), Postives = 180/259 (69.50%), Query Frame = 1

Query: 85  PIPELSLIPD-SCSSPNGFQNLSNFDVKNEESHLGFNQPPLCFDPSDHNNNNNNNNAATV 144
           P P+  L+P+ S SS NGFQNL+NFDVKNEES LGFN PPLCFDP ++           V
Sbjct: 9   PTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPEN-----------V 68

Query: 145 DKSLL-HRS---------RMESLLMESVSPNFPNQ--SLPCSESEFFSSQIRRVFSTGDL 204
           DKSLL HRS         R+E+ LMES   NFPN   SLPC ES+FFSSQIRRVFSTGDL
Sbjct: 69  DKSLLLHRSFSEKPNFQTRLETFLMES--QNFPNNHHSLPCPESDFFSSQIRRVFSTGDL 128

Query: 205 QNSSMGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNK 264
           QNS  GRS               +  +EEGNFKVGRYSAEERKERI KYRAKR QRNFNK
Sbjct: 129 QNSGNGRS---------------SSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNK 188

Query: 265 TIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDDFWMERLHAGE------ 319
           TIKYACRKTLADNRPRIRGRFARNDEPG+  K + STREEDEDDFW+E LH  E      
Sbjct: 189 TIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIR 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COL5_ARATH8.2e-0653.06Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KNV6_CUCSA3.7e-6962.93Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1[more]
W9QPI7_9ROSA3.8e-4240.91Zinc finger protein CONSTANS-LIKE 3 OS=Morus notabilis GN=L484_024243 PE=4 SV=1[more]
B9GWU0_POPTR2.1e-4041.45Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1[more]
V4TM74_9ROSI2.7e-4048.54Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021189mg PE=4 SV=1[more]
B9GKF0_POPTR2.0e-3839.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G63820.11.2e-3440.63 CCT motif family protein[more]
AT5G41380.13.6e-2838.56 CCT motif family protein[more]
AT5G59990.11.5e-1844.90 CCT motif family protein[more]
AT2G33350.13.4e-1843.17 CCT motif family protein[more]
AT1G04500.13.4e-1857.14 CCT motif family protein[more]
Match NameE-valueIdentityDescription
gi|778699549|ref|XP_011654732.1|2.9e-9161.24PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativ... [more]
gi|449452462|ref|XP_004143978.1|7.0e-9061.06PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativ... [more]
gi|659073898|ref|XP_008437312.1|3.9e-8860.78PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo][more]
gi|659073896|ref|XP_008437311.1|1.2e-8660.61PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo][more]
gi|700194900|gb|KGN50077.1|5.2e-6962.93hypothetical protein Csa_5G152920 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G014700.1CmoCh02G014700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 233..275
score: 1.7
IPR010402CCT domainPROFILEPS51017CCTcoord: 233..275
score: 15
NoneNo IPR availablePANTHERPTHR31319FAMILY NOT NAMEDcoord: 157..306
score: 4.2
NoneNo IPR availablePANTHERPTHR31319:SF20CCT MOTIF FAMILY PROTEINcoord: 157..306
score: 4.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G014700CmoCh15G013070Cucurbita moschata (Rifu)cmocmoB250
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G014700Cucumber (Chinese Long) v3cmocucB0701
CmoCh02G014700Watermelon (97103) v2cmowmbB623
CmoCh02G014700Cucumber (Gy14) v1cgycmoB0369
CmoCh02G014700Wild cucumber (PI 183967)cmocpiB641
CmoCh02G014700Melon (DHL92) v3.5.1cmomeB549
CmoCh02G014700Watermelon (Charleston Gray)cmowcgB561
CmoCh02G014700Watermelon (97103) v1cmowmB561
CmoCh02G014700Bottle gourd (USVL1VR-Ls)cmolsiB524