Cp4.1LG05g03240.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTCTCAAGAACTTCATAAACGGGAAAGAACAAGACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACCAGAGCTTTATTTCCATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGGTATGGCATGTTATATATATTTTGGGGAGAAACCCATTTACGGTTGGTAGTAAATGTTTGAATATGGGGGCAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGGTTAGTATAGCAGAACTGAATTCAAAAACAAAAACGGTTTTCAGAGATTTGAGGATGCCGCATTAATGGGGAGTTTGGGATGAACTGAACAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGGTAAAAATCTCTTCTTTTTCTTTTTTATTTTATTTATTTAATGAGAAAAAAATTCATATATTGTTTGAATGCCAGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCACCTGGAAGGAGAAGAAGAAGATGAAGAAATATATATTATATATATATATATATATATTATTTATTTTTTCTTTTTCTTTTTCTTTTCCCCTTCCAGCGAAGGGAGAAAAAAAAAAGAAAAAAAGAACTTGACCAAAAGGCCCTTTATTCACAACTCTGTCTAAATAAGTAAATAATAATAATTGAACAGAGGTGGGGGTAGTGG AACTCTCAAGAACTTCATAAACGGGAAAGAACAAGACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACCAGAGCTTTATTTCCATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGATCGCACCTGGAAGGAGAAGAAGAAGATGAAGAAATATATATTATATATATATATATATATATTATTTATTTTTTCTTTTTCTTTTTCTTTTCCCCTTCCAGCGAAGGGAGAAAAAAAAAAGAAAAAAAGAACTTGACCAAAAGGCCCTTTATTCACAACTCTGTCTAAATAAGTAAATAATAATAATTGAACAGAGGTGGGGGTAGTGG ATGTCTTCTGATCTGTTCGTTCATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCGTTGTTCCGCCTCTGATTTAGTCTTCCCATCTGATGCAGACTTCCAATTCTTAACCGGATCTTGTTCCCCTAATTTCTCCGATCACGGCATTGATCTTCACGTTTATTACCCACATCAAAACCCACTCCCCGCCGATGAATCCAATTCCAATTCAAACTCCAATTCCGTCGATCAACTCATTCCGATCCCGGAATTAGCTCTCATCCCAGATTCCTGTTCTTCCCCAAATGGGTTTCAAAATCTCTCAAATTTCGGTGTAAAAAACGAAGAATCCCATCTGGGTTTCAACCAACCCCCACTCTGTTTCGACCCATCTGATCATAATAATAATAATGCCGCCACCGTCGACAAATCCCTGCTCCACAGAAGTCGCATGGAGTCTCTTTTAATGGAGTCCGTGTCACCAAATTTCCCCAATCAGTCCCTCCCCTGTTCAGAATCAGAGTTTTTCTCCTCCCAAATCCGTCGCGTTTTCAGCACCGGCGATTTACAGAATTCAAGCATGGGACGGTCGAGGACAGGGTGCGGGCAAGGGTCGTTCTCGAGTCCATTATCGGAGAACGGAAGCTTAGAAGAGGGGAATTTCAAAGTGGGACGGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCGAAATACAGAGCAAAACGAAGGCAGAGGAATTTCAACAAGACGATCAAGTATGCTTGCCGGAAAACACTCGCCGACAACCGCCCCAGAATACGTGGCAGATTTGCTCGCAATGACGAACCTGGAGACAGCTCCAAACCTTCTTCTTCAACCAGAGAAGAAGACGAAGATGAATTCTGGATGGAACGGTTGCATGCAGGGGAAGAAATGTACGGACAAGTGCAGTTTCAGTATTGTGAATTTTGA MSSDLFVHGDSSSSSSSSSSSLFRCSASDLVFPSDADFQFLTGSCSPNFSDHGIDLHVYYPHQNPLPADESNSNSNSNSVDQLIPIPELALIPDSCSSPNGFQNLSNFGVKNEESHLGFNQPPLCFDPSDHNNNNAATVDKSLLHRSRMESLLMESVSPNFPNQSLPCSESEFFSSQIRRVFSTGDLQNSSMGRSRTGCGQGSFSSPLSENGSLEEGNFKVGRYSAEERKERISKYRAKRRQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGDSSKPSSSTREEDEDEFWMERLHAGEEMYGQVQFQYCEF
BLAST of Cp4.1LG05g03240.1 vs. Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06 Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06 Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TrEMBL
Match: A0A0A0KNV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152920 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 4.7e-69 Identity = 162/255 (63.53%), Postives = 179/255 (70.20%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TrEMBL
Match: V4TM74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021189mg PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41 Identity = 117/235 (49.79%), Postives = 146/235 (62.13%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TrEMBL
Match: W9QPI7_9ROSA (Zinc finger protein CONSTANS-LIKE 3 OS=Morus notabilis GN=L484_024243 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 9.3e-41 Identity = 151/374 (40.37%), Postives = 186/374 (49.73%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TrEMBL
Match: B9GWU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13050g PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40 Identity = 145/345 (42.03%), Postives = 181/345 (52.46%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TrEMBL
Match: B9GKF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09680g PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39 Identity = 140/353 (39.66%), Postives = 195/353 (55.24%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TAIR10
Match: AT1G63820.1 (AT1G63820.1 CCT motif family protein) HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33 Identity = 127/317 (40.06%), Postives = 166/317 (52.37%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TAIR10
Match: AT5G41380.1 (AT5G41380.1 CCT motif family protein) HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30 Identity = 126/319 (39.50%), Postives = 168/319 (52.66%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TAIR10
Match: AT5G59990.1 (AT5G59990.1 CCT motif family protein) HSP 1 Score: 96.3 bits (238), Expect = 3.6e-20 Identity = 77/193 (39.90%), Postives = 101/193 (52.33%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TAIR10
Match: AT2G33350.1 (AT2G33350.1 CCT motif family protein) HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18 Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. TAIR10
Match: AT1G04500.1 (AT1G04500.1 CCT motif family protein) HSP 1 Score: 88.2 bits (217), Expect = 9.8e-18 Identity = 47/84 (55.95%), Postives = 67/84 (79.76%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. NCBI nr
Match: gi|778699549|ref|XP_011654732.1| (PREDICTED: two-component response regulator-like APRR5 isoform X2 [Cucumis sativus]) HSP 1 Score: 344.0 bits (881), Expect = 2.8e-91 Identity = 217/352 (61.65%), Postives = 241/352 (68.47%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. NCBI nr
Match: gi|449452462|ref|XP_004143978.1| (PREDICTED: two-component response regulator-like APRR5 isoform X1 [Cucumis sativus]) HSP 1 Score: 339.3 bits (869), Expect = 6.9e-90 Identity = 217/353 (61.47%), Postives = 241/353 (68.27%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. NCBI nr
Match: gi|659073898|ref|XP_008437312.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X2 [Cucumis melo]) HSP 1 Score: 332.8 bits (852), Expect = 6.5e-88 Identity = 216/353 (61.19%), Postives = 238/353 (67.42%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. NCBI nr
Match: gi|659073896|ref|XP_008437311.1| (PREDICTED: uncharacterized protein LOC103482769 isoform X1 [Cucumis melo]) HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86 Identity = 216/354 (61.02%), Postives = 238/354 (67.23%), Query Frame = 1
BLAST of Cp4.1LG05g03240.1 vs. NCBI nr
Match: gi|700194900|gb|KGN50077.1| (hypothetical protein Csa_5G152920 [Cucumis sativus]) HSP 1 Score: 269.6 bits (688), Expect = 6.8e-69 Identity = 162/255 (63.53%), Postives = 179/255 (70.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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