Cp4.1LG04g08290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g08290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial transcription termination factor family protein
LocationCp4.1LG04 : 3129477 .. 3130313 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCGACACTCCCACCTCTAGACCTCCTCCTCCTCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGCTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCTGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

mRNA sequence

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCGACACTCCCACCTCTAGACCTCCTCCTCCTCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGCTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCTGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Coding sequence (CDS)

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCGACACTCCCACCTCTAGACCTCCTCCTCCTCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGCTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCTGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Protein sequence

MAVGALSRPFTTISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLLDSHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK
Homology
[Close]
BLAST of Cp4.1LG04g08290 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-35
Identity = 98/235 (41.70%), Postives = 137/235 (58.30%), Query Frame = 1 

Query: 45  LRYLKSLRLLDSHSTKLRSPDA----VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSP 104
           L YL+ L + D H     +P      + S+++    L S G S      +  + P L + 
Sbjct: 37  LIYLQDLNV-DPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTS 96

Query: 105 DFEPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLN 164
           D E ++I PV  FL+ ++S S Q+    I RCP+LL S V+  LRP L FLK +G    +
Sbjct: 97  DPE-SEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 156

Query: 165 TPSNLKSHLLNTRVEK-LRGKFRFLQE-LGFSHEEAAKVCRRMPALFGYSVEENLRPKYE 224
           T ++  + LL + VE+ L  K  +L+E LGF+ EE AK+  R PAL  YSV+ NL PK E
Sbjct: 157 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 216

Query: 225 YLVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 274
           + + EM  DV+ELK FPQYF+FSLER+I PRH  LK+  + +PL  ML  SD +F
Sbjct: 217 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 269

[Close]
BLAST of Cp4.1LG04g08290 vs. Swiss-Prot
Match: MTEF9_ARATH (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-14
Identity = 59/218 (27.06%), Postives = 105/218 (48.17%), Query Frame = 1 

Query: 68  HSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRG 127
           +++ A + FL   G  +S    +    P LFS   E   + P   +L  ++     +   
Sbjct: 253 NNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGK 312

Query: 128 MILRCPKLLFSDVELCLRPTLRFL-KQIGIENLNTPSNLKSH--LLNTRVEK-LRGKFRF 187
           ++   P++L   +++       FL K++G    +    +K H  LL+  ++     +  F
Sbjct: 313 VVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINF 372

Query: 188 LQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLE 247
           L+ +G  + +  KV   +  +   S+E+NL+PKY YLVNE+  +V  L ++P Y + SL+
Sbjct: 373 LRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLD 432

Query: 248 RRIAPRHLHL----KQRNLRIPLHRMLLWSDQKFYTKW 278
           +RI PRH  L    K R    PL   L+ +D+ F  +W
Sbjct: 433 QRIRPRHRFLVELKKVRKGPFPL-SSLVPNDESFCQQW 468

[Close]
BLAST of Cp4.1LG04g08290 vs. Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.5e-14
Identity = 59/183 (32.24%), Postives = 96/183 (52.46%), Query Frame = 1 

Query: 95  PQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFL-KQ 154
           P L+  D E T IAP   FL  ++    +    M+++ P LL + +   +RP + FL  +
Sbjct: 413 PILYCIDLEKT-IAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 472

Query: 155 IGI--ENLNTPSNLKSHLLNTRV-EKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVE 214
            G+  +++     +   LL   +  KL    R+   LG    +  ++    P L  Y+V 
Sbjct: 473 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV- 532

Query: 215 ENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSD 274
           +NLRPKY YL   M R +++L EFP++F++SLERRI PRH  + +  +   L  ML  +D
Sbjct: 533 DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTD 592

[Close]
BLAST of Cp4.1LG04g08290 vs. Swiss-Prot
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-12
Identity = 53/202 (26.24%), Postives = 101/202 (50.00%), Query Frame = 1 

Query: 73  TVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMIL-R 132
           T+ FL++ G   + +  +    P + +  +    +    +FL+   +   +E  G IL R
Sbjct: 271 TMAFLETLGIDKNQWAKIISRFPAILT--YSRQKLTSTVEFLSQ--TGLTEEQIGRILTR 330

Query: 133 CPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSH 192
           CP ++   VE  LRPT+ + + + ++              +    L+    F  E GF  
Sbjct: 331 CPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGL 390

Query: 193 EEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHL 252
           +E   +  R  AL+ +S++EN+ PK++Y    M+    EL +FPQ+F +SL+ RI PR+ 
Sbjct: 391 DEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYE 450

Query: 253 HLKQRNLRIPLHRMLLWSDQKF 274
            +++  +R+ L+++L  S  +F
Sbjct: 451 LVQRSGVRLLLNQVLSLSGIEF 467

[Close]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match: A0A0A0K870_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 3.0e-107
Identity = 201/283 (71.02%), Postives = 228/283 (80.57%), Query Frame = 1 

Query: 1   MAVG--ALSRPFTTISSLSHSDTPTSRPPPPPP---PPFLNFRTAHYHNLRYLKSLRLLD 60
           MAVG   LS  F  + S SH  TPT       P   PP +NFRT+H+ N+RYLKSL ++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
              T+  SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           QYF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match: M5VJL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 8.3e-94
Identity = 177/273 (64.84%), Postives = 213/273 (78.02%), Query Frame = 1 

Query: 8   RPFTTISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLL--DSHSTKLRSPD 67
           R    I + S S +  +   P PP  F+ FRT++  NLRYLK+LR++  +++  KL  PD
Sbjct: 3   RTLCLIPTPSSSSSSLTTSNPHPPSHFIKFRTSYRENLRYLKTLRIISPETNPKKLPLPD 62

Query: 68  AVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQES 127
           A   IL+TV+FLKSKGFSD DFP LAFL P+LFSP  +PTDIAPVFDFLAA+L A    S
Sbjct: 63  ATDQILSTVNFLKSKGFSDPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSS 122

Query: 128 RGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQ 187
            G+ILRCP LLFSDVE CLRPTL +LKQ+G++ L  P+NL +HLLNTRVEKL+ K RFL+
Sbjct: 123 CGLILRCPDLLFSDVEFCLRPTLHYLKQLGLDKLGAPTNLNAHLLNTRVEKLKRKMRFLR 182

Query: 188 ELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERR 247
            L  S+EEAA VC R+PA+FGYSVE+NLRPKYEYLV EM R V+ELK+FPQYF FSLE+R
Sbjct: 183 SLTLSYEEAANVCVRLPAIFGYSVEDNLRPKYEYLVKEMGRSVDELKKFPQYFGFSLEKR 242

Query: 248 IAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           I PRHLHLK+RN+ IPL+RMLLWSDQKFY KWK
Sbjct: 243 IVPRHLHLKERNVEIPLNRMLLWSDQKFYAKWK 275

[Close]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match: W9R114_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 8.6e-91
Identity = 173/283 (61.13%), Postives = 218/283 (77.03%), Query Frame = 1 

Query: 1   MAVGALSRPFTTISSLSHSDTPTSRPPPPP---PPPFLNFRTAHYHNLRYLKSLRLL--D 60
           +++ +LS P  + SS   S  P S    PP   P  F+ FRT+H  NLRYLK+L ++  D
Sbjct: 6   LSLSSLSLPLNSFSSSVSSINPHSSSSSPPTFTPSRFIKFRTSHRENLRYLKTLGIVTAD 65

Query: 61  SHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
                L  PD V  ILA V FLKSKGFS++DFP LAFL P LFSP F+P  IAPVFDFLA
Sbjct: 66  DKPKNLPLPDDVERILAAVDFLKSKGFSNADFPRLAFLSPNLFSPGFDPAGIAPVFDFLA 125

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
           +D++A  +ES  +ILRCP LLFS+VE CLRPTL +L+++G+E LN+P+ L +HLLNTRVE
Sbjct: 126 SDVAALPEESCRLILRCPALLFSNVEYCLRPTLDYLRKLGLERLNSPTTLNAHLLNTRVE 185

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KL+ K +FL+ +G S++E+A++C R+PA+FGYSVE+NLRPKYEYLV EMER ++ELK FP
Sbjct: 186 KLQKKMKFLRSIGLSYDESARICARIPAIFGYSVEDNLRPKYEYLVWEMERSLDELKRFP 245

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           QYFAFSL++RI PRHLHLKQRN+RIPL+RMLLW DQKFY KWK
Sbjct: 246 QYFAFSLKKRIVPRHLHLKQRNVRIPLNRMLLWGDQKFYAKWK 288

[Close]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match: A0A059BAH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 4.7e-89
Identity = 159/267 (59.55%), Postives = 213/267 (79.78%), Query Frame = 1 

Query: 14  SSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLLD--SHSTKLRSPDAVHSIL 73
           +S S +    ++   P  P +L FRT+H  N+RYL++L ++D  S   KL SPD +  +L
Sbjct: 16  ASCSKTIKACTKASSPYQPLYLRFRTSHVENVRYLRTLGVIDPVSRHRKLPSPDTIDRVL 75

Query: 74  ATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILR 133
             V+FLKSKGFS+SDFP LA+LCP LF+ + +PTDIAPVF+FL  ++SAS QES  +I +
Sbjct: 76  NIVNFLKSKGFSESDFPRLAYLCPGLFASELDPTDIAPVFEFLTVEVSASAQESCSLINK 135

Query: 134 CPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSH 193
           CP++LFSDVE CL+PTL +L+Q+GI  LN PS L +HLLNTRVEKL GK +FL+ +G +H
Sbjct: 136 CPQILFSDVEYCLKPTLNYLRQLGIGRLNFPSTLNAHLLNTRVEKLHGKVKFLRSIGLTH 195

Query: 194 EEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHL 253
           +E A++C R+P++FGYS++ NLRPKY+YLV +MER++EELK+FPQYFAFSLE+RIAPRHL
Sbjct: 196 QEIARICARLPSIFGYSIDNNLRPKYDYLVEDMERNLEELKKFPQYFAFSLEKRIAPRHL 255

Query: 254 HLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           HLK+RN++IPL+RMLLW D+KFY KWK
Sbjct: 256 HLKRRNVKIPLNRMLLWGDEKFYAKWK 282

[Close]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match: D7TQ07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-88
Identity = 169/269 (62.83%), Postives = 209/269 (77.70%), Query Frame = 1 

Query: 12  TISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLLDSHST--KLRSPDAVHS 71
           TISS+  S +  S      PP  L FRT+H  NLRYLK+L ++D  +   K  SP+AV  
Sbjct: 9   TISSIK-SPSSQSLSSSEHPPYLLRFRTSHRENLRYLKTLGIIDPSTKPHKFPSPEAVDQ 68

Query: 72  ILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMI 131
           +L+TV+FLKSKGFS+ DFP L+FLCP+LFS D +PTDI PVFDFL  DL+AS QES  +I
Sbjct: 69  VLSTVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLAASDQESCSLI 128

Query: 132 LRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGF 191
           LRCP++L SDVE CLRPTL +L+++G+E LN P++L +HLLNTRVE+L  K RFL+ +G 
Sbjct: 129 LRCPQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVERLVAKIRFLRSVGL 188

Query: 192 SHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPR 251
           S+EE+A+ C R PA+FGYS+E NL+PK+ YLV EM+R VEELK FPQYFAFSLE RI PR
Sbjct: 189 SYEESARACGRFPAVFGYSIENNLKPKFNYLVREMKRSVEELKVFPQYFAFSLENRIMPR 248

Query: 252 HLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           HLHL+QRN+RI L RMLLWSDQKFY KWK
Sbjct: 249 HLHLEQRNVRISLKRMLLWSDQKFYAKWK 276

[Close]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match: AT3G18870.1 (AT3G18870.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-87
Identity = 157/270 (58.15%), Postives = 203/270 (75.19%), Query Frame = 1 

Query: 13  ISSLSHSDTPTSRPPPPPP----PPFLNFRTAHYHNLRYLKSLRLLDSHSTKLRSPDAVH 72
           I+SL H    +S   PP P    P +L F+T+H  NLR+L SL ++  +       + + 
Sbjct: 4   IASLHHLQPLSSFSSPPSPSSSKPLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLS 63

Query: 73  SILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGM 132
            IL+ V+ LKSKG SD DFP L FLCPQLFSP F+ + + PVFDFL  +L AS +ESRG+
Sbjct: 64  VILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGL 123

Query: 133 ILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELG 192
           I+ CP +LFSDVE CLRPTL +LK++G+ NLN  S   +H+LNTRVEKLR K RFL+ +G
Sbjct: 124 IVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIG 183

Query: 193 FSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAP 252
           F HEEAA+VC R+PA+FGYSVE+NLRPK+E+LV +MER++EELK+FPQYFAFSL +RI P
Sbjct: 184 FEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRP 243

Query: 253 RHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           RH HLK++N+R+ L RML+W DQKFY+KWK
Sbjct: 244 RHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273

[Close]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match: AT2G34620.1 (AT2G34620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 164.5 bits (415), Expect = 9.6e-41
Identity = 90/206 (43.69%), Postives = 133/206 (64.56%), Query Frame = 1 

Query: 69  SILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGM 128
           SI + +HFL+SKG   +D P +  +CP++ + D   T++ PVF FL+ DL       R +
Sbjct: 86  SIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVR-TELYPVFMFLSNDLHVPENAFRRV 145

Query: 129 ILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQEL 188
           I +CP+LL S VE  L+P L +L+++G+++L   +     LL + VE  L  K RFL+ +
Sbjct: 146 IKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLESI 205

Query: 189 GFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIA 248
           GFS  EA  +  R PALF +S+E N +PK +Y ++E++  +E LKEFPQYFAFSLE+RI 
Sbjct: 206 GFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIK 265

Query: 249 PRHLHLKQRNLRIPLHRMLLWSDQKF 274
           PRHL   +R L +PL  ML  +D++F
Sbjct: 266 PRHLESMERGLELPLSLMLKSTDEEF 290

[Close]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match: AT2G03050.1 (AT2G03050.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36
Identity = 98/235 (41.70%), Postives = 137/235 (58.30%), Query Frame = 1 

Query: 45  LRYLKSLRLLDSHSTKLRSPDA----VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSP 104
           L YL+ L + D H     +P      + S+++    L S G S      +  + P L + 
Sbjct: 36  LIYLQDLNV-DPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTS 95

Query: 105 DFEPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLN 164
           D E ++I PV  FL+ ++S S Q+    I RCP+LL S V+  LRP L FLK +G    +
Sbjct: 96  DPE-SEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 155

Query: 165 TPSNLKSHLLNTRVEK-LRGKFRFLQE-LGFSHEEAAKVCRRMPALFGYSVEENLRPKYE 224
           T ++  + LL + VE+ L  K  +L+E LGF+ EE AK+  R PAL  YSV+ NL PK E
Sbjct: 156 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 215

Query: 225 YLVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 274
           + + EM  DV+ELK FPQYF+FSLER+I PRH  LK+  + +PL  ML  SD +F
Sbjct: 216 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

[Close]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match: AT2G36000.1 (AT2G36000.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-28
Identity = 95/270 (35.19%), Postives = 143/270 (52.96%), Query Frame = 1 

Query: 13  ISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSL-----RLLDSHSTKLRSPDAV 72
           I SLS + T T+              ++ +  L YL SL      L++ H   L +  A+
Sbjct: 53  IPSLSSTTTTTTTTE--------TLESSIHEKLIYLDSLGIDFLTLINRHPPLLST--AL 112

Query: 73  HSILATVHFLKSK--GFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA-SIQE 132
            ++ + V ++ +    F+  DF  L  +CP+L +       I PV  FL  ++   SI +
Sbjct: 113 SAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTI-PVITFLLREVGVDSIFD 172

Query: 133 SRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE-KLRGKFRF 192
            R  + R P+LL   V+  LRPTL FL++IGI +     +  ++LL+  V+ KL  +  +
Sbjct: 173 LRQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDY 232

Query: 193 LQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLE 252
            ++LGFS   A  + +R P LF YS+ EN  PK +YL+ EM RDV E+ EFPQYF+FSLE
Sbjct: 233 FEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLE 292

Query: 253 RRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 274
            RI PRH     + +R PL  ML  ++  F
Sbjct: 293 NRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match: AT1G78930.1 (AT1G78930.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-23
Identity = 60/174 (34.48%), Postives = 100/174 (57.47%), Query Frame = 1 

Query: 103 EPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTP 162
           +P +   V  FL  DL    +    ++ RCP++    +E  L+  L FL + G+   + P
Sbjct: 402 KPQEFLKVVCFLE-DLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFP 461

Query: 163 SNLKSH---LLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEY 222
             +K +   L+    + +  + ++L E+G S  E A + R+   + GYS+++ LRPK+E+
Sbjct: 462 RIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEF 521

Query: 223 LVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 274
           LVN ME+ V E+ E+P+YF++SLE+RI PR   LK RN+   L  ML  +D++F
Sbjct: 522 LVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

[Close]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match: gi|659109777|ref|XP_008454873.1| (PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107
Identity = 206/283 (72.79%), Postives = 230/283 (81.27%), Query Frame = 1 

Query: 1   MAVGA--LSRPFTTISSLSHSDTPTSRPPPPPP---PPFLNFRTAHYHNLRYLKSLRLLD 60
           MAVGA  LS  F  +SS SH  TPT       P   PP +NFRT+H  NLRYLKSL ++D
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
              T+ RSPDAV  IL TVHFLKSKGFSDSDFP LAF CP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
           AD+SASIQESRG+ILRCPK+LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RFLQE+GFS+EEA+KVC RMPA+FGYSV+ENLRPKYEYLV  MERD+EELK FP
Sbjct: 181 KLRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           QYF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match: gi|778725293|ref|XP_011658929.1| (PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus])

HSP 1 Score: 396.4 bits (1017), Expect = 4.2e-107
Identity = 201/283 (71.02%), Postives = 228/283 (80.57%), Query Frame = 1 

Query: 1   MAVG--ALSRPFTTISSLSHSDTPTSRPPPPPP---PPFLNFRTAHYHNLRYLKSLRLLD 60
           MAVG   LS  F  + S SH  TPT       P   PP +NFRT+H+ N+RYLKSL ++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
              T+  SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           QYF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match: gi|658042746|ref|XP_008356998.1| (PREDICTED: uncharacterized protein LOC103420736 [Malus domestica])

HSP 1 Score: 359.4 bits (921), Expect = 5.7e-96
Identity = 181/266 (68.05%), Postives = 213/266 (80.08%), Query Frame = 1 

Query: 15  SLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLLDSHST--KLRSPDAVHSILA 74
           S S S   T  P P PP  F+ FRT++  NLRYLK+LR++   ++  KL  PDA   ILA
Sbjct: 16  SSSSSSIATLNPNPHPPSHFIKFRTSYRENLRYLKTLRIISPETSPKKLPLPDATDQILA 75

Query: 75  TVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRC 134
           TV FLKSKGF+DSDFP LAFL P+LFSP  +PTDIAPVFDFLA+DLSA    S G+ILRC
Sbjct: 76  TVGFLKSKGFTDSDFPRLAFLSPKLFSPSLDPTDIAPVFDFLASDLSADPAFSCGLILRC 135

Query: 135 PKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHE 194
           P LLF+DVE CLRPTL +L+Q+GI+   +PSNL +HLLNTRVEKL+ K RFL+ LG S+E
Sbjct: 136 PDLLFADVEFCLRPTLHYLEQLGIDKPKSPSNLNAHLLNTRVEKLKKKMRFLRSLGLSYE 195

Query: 195 EAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHLH 254
           EAA VC R+PA+FGYSVE+NLRPKYEYLV +M R VEELK+FPQYF FSLE+RI PRHLH
Sbjct: 196 EAANVCARLPAIFGYSVEDNLRPKYEYLVKDMGRSVEELKKFPQYFGFSLEKRIVPRHLH 255

Query: 255 LKQRNLRIPLHRMLLWSDQKFYTKWK 279
           LK+RN+ IPL+RMLLWSDQKFYTKWK
Sbjct: 256 LKERNVEIPLNRMLLWSDQKFYTKWK 281

[Close]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match: gi|1009165028|ref|XP_015900819.1| (PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba])

HSP 1 Score: 353.2 bits (905), Expect = 4.1e-94
Identity = 175/272 (64.34%), Postives = 222/272 (81.62%), Query Frame = 1 

Query: 14  SSLSHSDTPTSRPP-----PPPPPPFLNFRTAHYHNLRYLKSLRLLDSHS--TKLRSPDA 73
           SS S S T T++P      P  PP F+ FRT+H  NLRYLK+L ++D  +    L  PD 
Sbjct: 12  SSSSSSFTKTTKPKTLYPTPNQPPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDD 71

Query: 74  VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESR 133
           V  IL TV FLKSKGFSDSDFP LAFL P+LFS + +PTDIAPVFDFLAADLSAS++++R
Sbjct: 72  VDQILLTVDFLKSKGFSDSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTR 131

Query: 134 GMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQE 193
            +IL+CP +LFSDVE CLRPTL +L+++G+E L+ P++L +HLLNTRVEKLR K  FL+ 
Sbjct: 132 RLILQCPPILFSDVEYCLRPTLHYLRKLGLERLDRPTSLNAHLLNTRVEKLRMKIGFLRR 191

Query: 194 LGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRI 253
           +G S++E+++VC R+PA+FGYS+EENL+PKYEYLV EMER++EELK+FPQYFAFSLE++I
Sbjct: 192 IGLSYDESSRVCARVPAIFGYSIEENLKPKYEYLVMEMERNLEELKKFPQYFAFSLEKKI 251

Query: 254 APRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
            PRHLHLKQRN+RIPL+RML+WSDQ+FY KWK
Sbjct: 252 KPRHLHLKQRNVRIPLNRMLIWSDQRFYAKWK 283

[Close]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match: gi|595792669|ref|XP_007200083.1| (hypothetical protein PRUPE_ppa021045mg [Prunus persica])

HSP 1 Score: 351.7 bits (901), Expect = 1.2e-93
Identity = 177/273 (64.84%), Postives = 213/273 (78.02%), Query Frame = 1 

Query: 8   RPFTTISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLL--DSHSTKLRSPD 67
           R    I + S S +  +   P PP  F+ FRT++  NLRYLK+LR++  +++  KL  PD
Sbjct: 3   RTLCLIPTPSSSSSSLTTSNPHPPSHFIKFRTSYRENLRYLKTLRIISPETNPKKLPLPD 62

Query: 68  AVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQES 127
           A   IL+TV+FLKSKGFSD DFP LAFL P+LFSP  +PTDIAPVFDFLAA+L A    S
Sbjct: 63  ATDQILSTVNFLKSKGFSDPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSS 122

Query: 128 RGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQ 187
            G+ILRCP LLFSDVE CLRPTL +LKQ+G++ L  P+NL +HLLNTRVEKL+ K RFL+
Sbjct: 123 CGLILRCPDLLFSDVEFCLRPTLHYLKQLGLDKLGAPTNLNAHLLNTRVEKLKRKMRFLR 182

Query: 188 ELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERR 247
            L  S+EEAA VC R+PA+FGYSVE+NLRPKYEYLV EM R V+ELK+FPQYF FSLE+R
Sbjct: 183 SLTLSYEEAANVCVRLPAIFGYSVEDNLRPKYEYLVKEMGRSVDELKKFPQYFGFSLEKR 242

Query: 248 IAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 279
           I PRHLHLK+RN+ IPL+RMLLWSDQKFY KWK
Sbjct: 243 IVPRHLHLKERNVEIPLNRMLLWSDQKFYAKWK 275

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g08290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF1_ARATH1.9e-3541.70Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN... [more]
MTEF9_ARATH1.9e-1427.06Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF2_ARATH5.5e-1432.24Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF5_ARATH3.9e-1226.24Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana G... [more]
BLAST of Cp4.1LG04g08290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K870_CUCSA3.0e-10771.02Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1[more]
M5VJL2_PRUPE8.3e-9464.84Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1[more]
W9R114_9ROSA8.6e-9161.13Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1[more]
A0A059BAH6_EUCGR4.7e-8959.55Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1[more]
D7TQ07_VITVI1.1e-8862.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=... [more]
BLAST of Cp4.1LG04g08290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18870.11.4e-8758.15 Mitochondrial transcription termination factor family protein[more]
AT2G34620.19.6e-4143.69 Mitochondrial transcription termination factor family protein[more]
AT2G03050.11.1e-3641.70 Mitochondrial transcription termination factor family protein[more]
AT2G36000.13.2e-2835.19 Mitochondrial transcription termination factor family protein[more]
AT1G78930.15.3e-2334.48 Mitochondrial transcription termination factor family protein[more]
BLAST of Cp4.1LG04g08290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109777|ref|XP_008454873.1|1.1e-10772.79PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo][more]
gi|778725293|ref|XP_011658929.1|4.2e-10771.02PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus][more]
gi|658042746|ref|XP_008356998.1|5.7e-9668.05PREDICTED: uncharacterized protein LOC103420736 [Malus domestica][more]
gi|1009165028|ref|XP_015900819.1|4.1e-9464.34PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba][more]
gi|595792669|ref|XP_007200083.1|1.2e-9364.84hypothetical protein PRUPE_ppa021045mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0016556 mRNA modification
biological_process GO:0071472 cellular response to salt stress
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08290.1Cp4.1LG04g08290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 126..273
score: 3.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 162..190
score: 100.0coord: 51..83
score: 1700.0coord: 126..157
score: 0.0013coord: 195..227
score: 1.9E-6coord: 88..121
score: 1600.0coord: 228..259
score:
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 29..277
score: 2.0E
NoneNo IPR availablePANTHERPTHR13068:SF19SUBFAMILY NOT NAMEDcoord: 29..277
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g08290CmaCh11G017840Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g08290CmoCh11G013220Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g08290Csa7G075660Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g08290MELO3C018405Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g08290ClCG02G005300Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g08290CSPI07G08120Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g08290MELO3C018405.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g08290CsaV3_7G010220Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g08290Bhi05G001050Wax gourdcpewgoB0855
Cp4.1LG04g08290CsGy7G007670Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g08290Carg26485Silver-seed gourdcarcpeB0932
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g08290Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g08290Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g08290Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g08290Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g08290Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g08290Wild cucumber (PI 183967)cpecpiB671
Cp4.1LG04g08290Cucumber (Chinese Long) v2cpecuB668
Cp4.1LG04g08290Bottle gourd (USVL1VR-Ls)cpelsiB525
Cp4.1LG04g08290Bottle gourd (USVL1VR-Ls)cpelsiB533
Cp4.1LG04g08290Watermelon (97103) v1cpewmB665
Cp4.1LG04g08290Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g08290Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g08290Silver-seed gourdcarcpeB0296
Cp4.1LG04g08290Cucumber (Chinese Long) v3cpecucB0835
Cp4.1LG04g08290Wax gourdcpewgoB0864