Carg26485 (gene) Silver-seed gourd

Overview
NameCarg26485
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription termination factor family protein
LocationCucurbita_argyrosperma_scaffold_250 : 49777 .. 50601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

mRNA sequence

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Coding sequence (CDS)

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Protein sequence

MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK
Homology
[Close]
BLAST of Carg26485 vs. NCBI nr
Match: XP_022931610.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 546.6 bits (1407), Expect = 4.9e-152
Identity = 271/274 (98.91%), Postives = 273/274 (99.64%), Query Frame = 0 

Query: 1   MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSP 60
           MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSP
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSP 60

Query: 61  DAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQE 120
           DAVHSILATVHFLKSKGFSDSDFP+LA LCPQLFSPDF+PTDIAPVFDFLAADLSASIQE
Sbjct: 61  DAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQE 120

Query: 121 SRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFL 180
           SRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFL
Sbjct: 121 SRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFL 180

Query: 181 QELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 240
           QELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER
Sbjct: 181 QELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 240

Query: 241 RIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           RIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK
Sbjct: 241 RIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 274

[Close]
BLAST of Carg26485 vs. NCBI nr
Match: XP_023530124.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.7 bits (1319), Expect = 7.8e-142
Identity = 260/278 (93.53%), Postives = 263/278 (94.60%), Query Frame = 0 

Query: 1   MAVGALSRPFTTISSLSHSNTP----TSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTK 60
           MAVGALSRPFTTISSLSHS+TP           FLNFRTAHYHNLRYLKSL LLDS STK
Sbjct: 1   MAVGALSRPFTTISSLSHSDTPXXXXXXXXXXXFLNFRTAHYHNLRYLKSLRLLDSHSTK 60

Query: 61  FRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA 120
            RSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA
Sbjct: 61  LRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA 120

Query: 121 SIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK 180
           SIQESRGMILRCP+LLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK
Sbjct: 121 SIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK 180

Query: 181 FRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAF 240
           FRFLQELGFSHEEAAKVCRRMPA+FGYSVEENLRPKYEYLVNEMERDVEELKEFP YFAF
Sbjct: 181 FRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAF 240

Query: 241 SLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           SLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK
Sbjct: 241 SLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 278

[Close]
BLAST of Carg26485 vs. NCBI nr
Match: XP_022988882.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 496.5 bits (1277), Expect = 5.8e-137
Identity = 253/281 (90.04%), Postives = 259/281 (92.17%), Query Frame = 0 

Query: 1   MAVGALSRPFTTISSLSHS-------NTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSR 60
           MAVGALS PFTTISSLSHS                 FLNFRTAH HNLRYLKSL LLDS 
Sbjct: 1   MAVGALSHPFTTISSLSHSXXXXXXXXXXXXXXXXXFLNFRTAHSHNLRYLKSLRLLDSH 60

Query: 61  STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAAD 120
           STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDF+PTDIAPVFDFLAAD
Sbjct: 61  STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAAD 120

Query: 121 LSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKL 180
           LSASIQESRGMILRCP+LLFSDVELCLRPTLRFLKQIG+ENLNTPSNLKSHLLNTRVEKL
Sbjct: 121 LSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKL 180

Query: 181 RGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHY 240
           RGKFRFLQELGFSHEEAAKVCRRMPA+FGYSVEENLRPKYEYLVNEMERD+EELKEFP Y
Sbjct: 181 RGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQY 240

Query: 241 FAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           FAFSLERRIAPRHLHLKQRNLRIPL+RMLLWSDQKFYTKWK
Sbjct: 241 FAFSLERRIAPRHLHLKQRNLRIPLNRMLLWSDQKFYTKWK 281

[Close]
BLAST of Carg26485 vs. NCBI nr
Match: XP_008454873.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo])

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 208/283 (73.50%), Postives = 234/283 (82.69%), Query Frame = 0 

Query: 1   MAVGA--LSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVGA  LS  F  +SS SH  TPT    SR P   PP +NFRT+H  NLRYLKSL+++D
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
            + T+FRSPDAV  IL TVHFLKSKGFSDSDFP LAF CP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
           AD+SASIQESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RFLQE+GFS+EEA+KVC RMPAIFGYSV+ENLRPKYEYLV  MERD+EELK FP
Sbjct: 181 KLRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Carg26485 vs. NCBI nr
Match: XP_011658929.1 (PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus] >KGN43986.1 hypothetical protein Csa_7G075660 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-107
Identity = 202/283 (71.38%), Postives = 232/283 (81.98%), Query Frame = 0 

Query: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Carg26485 vs. TAIR10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 317.4 bits (812), Expect = 8.7e-87
Identity = 158/274 (57.66%), Postives = 203/274 (74.09%), Query Frame = 0 

Query: 1   MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSP 60
           MAV A       +SS S   +P+S   P +L F+T+H  NLR+L SL ++          
Sbjct: 1   MAVIASLHHLQPLSSFSSPPSPSS-SKPLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPA 60

Query: 61  DAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQE 120
           + +  IL+ V+ LKSKG SD DFP L FLCPQLFSP F+ + + PVFDFL  +L AS +E
Sbjct: 61  NDLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEE 120

Query: 121 SRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFL 180
           SRG+I+ CP +LFSDVE CLRPTL +LK++G+ NLN  S   +H+LNTRVEKLR K RFL
Sbjct: 121 SRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFL 180

Query: 181 QELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 240
           + +GF HEEAA+VC R+PAIFGYSVE+NLRPK+E+LV +MER++EELK+FP YFAFSL +
Sbjct: 181 KSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGK 240

Query: 241 RIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           RI PRH HLK++N+R+ L RML+W DQKFY+KWK
Sbjct: 241 RIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273

[Close]
BLAST of Carg26485 vs. TAIR10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-25
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 0 

Query: 63  VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESR 122
           + S+++    L S G S      +  + P L + D E ++I PV  FL+ ++S S Q+  
Sbjct: 61  ISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPE-SEILPVLRFLSNEISISEQDIP 120

Query: 123 GMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQ 182
             I RCPRLL S V+  LRP L FLK +G    +T ++  + LL + VE+ L  K  +L+
Sbjct: 121 KSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLE 180

Query: 183 E-LGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 242
           E LGF+ EE AK+                          M  DV+ELK FP YF+FSLER
Sbjct: 181 EGLGFTREEVAKMVVXXXXXXXXXXXXXXXXXXXXXXXXMRGDVKELKRFPQYFSFSLER 240

Query: 243 RIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           +I PRH  LK+  + +PL  ML  SD +F
Sbjct: 241 KIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

[Close]
BLAST of Carg26485 vs. TAIR10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-22
Identity = 81/239 (33.89%), Postives = 112/239 (46.86%), Query Frame = 0 

Query: 38  YHNLRYLKSLHLLDSRSTKFRSPDAVHSILATVHFLKSK------GFSDSDFPTLAFLCP 97
           +  L YL SL  +D  +   R P  + + L+ V  +          F+  DF  L  +CP
Sbjct: 74  HEKLIYLDSLG-IDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCP 133

Query: 98  QLFSPDFEPTDIAPVFDFLAADLSA-SIQESRGMILRCPRLLFSDVELCLRPTLRFLKQI 157
           +L +       I PV  FL  ++   SI + R  + R PRLL   V+  LRPTL FL++I
Sbjct: 134 ELLTSPLTSHTI-PVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRI 193

Query: 158 GIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLR 217
           GI +   P                           S   A  + +R P +F YS+ EN  
Sbjct: 194 GILD---PHKHXXXXXXXXXXXXXXXXXXXXXXXXSRRSATAMFKRFPQLFNYSIAENYE 253

Query: 218 PKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           PK +YL+ EM RDV E+ EFP YF+FSLE RI PRH     + +R PL  ML  ++  F
Sbjct: 254 PKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]
BLAST of Carg26485 vs. TAIR10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-20
Identity = 61/206 (29.61%), Postives = 97/206 (47.09%), Query Frame = 0 

Query: 65  SILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGM 124
           SI + +HFL+SKG   +D P +  +CP++ + D   T++ PVF FL+ DL          
Sbjct: 86  SIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVR-TELYPVFMFLSNDLHVPEXXXXXX 145

Query: 125 ILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPS-NLKSHLLNTRVEKLRGKFRFLQEL 184
                                  +++G+++L   +                         
Sbjct: 146 XXXXXXXXXXXXXXXXXXXXXXXQRLGLKDLEALAYQXXXXXXXXXXXXXXXXXXXXXXX 205

Query: 185 GFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIA 244
                    +  R PA+F +S+E N +PK +Y ++E++  +E LKEFP YFAFSLE+RI 
Sbjct: 206 XXXXXXXXGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIK 265

Query: 245 PRHLHLKQRNLRIPLHRMLLWSDQKF 270
           PRHL   +R L +PL  ML  +D++F
Sbjct: 266 PRHLESMERGLELPLSLMLKSTDEEF 290

[Close]
BLAST of Carg26485 vs. TAIR10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 172 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 231
           KL    R+   LG    +  ++    P +  Y+V +NLRPKY YL   M R +++L EFP
Sbjct: 496 KLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFP 555

Query: 232 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
            +F++SLERRI PRH  + +  +   L  ML  +D++F
Sbjct: 556 RFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

[Close]
BLAST of Carg26485 vs. Swiss-Prot
Match: sp|Q84X53|MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 0 

Query: 63  VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESR 122
           + S+++    L S G S      +  + P L + D E ++I PV  FL+ ++S S Q+  
Sbjct: 62  ISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPE-SEILPVLRFLSNEISISEQDIP 121

Query: 123 GMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQ 182
             I RCPRLL S V+  LRP L FLK +G    +T ++  + LL + VE+ L  K  +L+
Sbjct: 122 KSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLE 181

Query: 183 E-LGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 242
           E LGF+ EE AK+                          M  DV+ELK FP YF+FSLER
Sbjct: 182 EGLGFTREEVAKMVVXXXXXXXXXXXXXXXXXXXXXXXXMRGDVKELKRFPQYFSFSLER 241

Query: 243 RIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           +I PRH  LK+  + +PL  ML  SD +F
Sbjct: 242 KIKPRHRLLKEHGILMPLSEMLKVSDGQF 269

[Close]
BLAST of Carg26485 vs. Swiss-Prot
Match: sp|F4IHL3|MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-11
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 172 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 231
           KL    R+   LG    +  ++    P +  Y+V +NLRPKY YL   M R +++L EFP
Sbjct: 496 KLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFP 555

Query: 232 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
            +F++SLERRI PRH  + +  +   L  ML  +D++F
Sbjct: 556 RFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

[Close]
BLAST of Carg26485 vs. Swiss-Prot
Match: sp|B6TGN4|MTEF4_MAIZE (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 179 FLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSL 238
           FL   GF   + +K+    P +   ++ + +R  +EY  NEMERD+EEL EFP +F + +
Sbjct: 357 FLTACGFMLSQVSKMVVACPQLLALNI-DIMRMNFEYFKNEMERDLEELVEFPAFFTYGI 416

Query: 239 ERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           E  + PRH  + ++ L   L  +L  SD KF  + K
Sbjct: 417 ESTVRPRHEMVSRKGLTCSLAWLLNCSDAKFDERMK 451

[Close]
BLAST of Carg26485 vs. Swiss-Prot
Match: sp|Q6AUK6|MTEF4_ORYSJ (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 0 

Query: 179 FLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSL 238
           FL   GF   + +K+    P +   ++ + ++  +EY  NEMERD+EEL EFP +F + L
Sbjct: 366 FLTSCGFLLSQVSKMVVACPQLLALNM-DIMKMSFEYFQNEMERDLEELVEFPAFFTYGL 425

Query: 239 ERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           E  + PRH  + ++     L  +L  SD KF  + K
Sbjct: 426 ESTVRPRHEMVAKKGFTCSLAWLLNCSDAKFDERMK 460

[Close]
BLAST of Carg26485 vs. Swiss-Prot
Match: sp|F4JVI3|MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-07
Identity = 33/130 (25.38%), Postives = 64/130 (49.23%), Query Frame = 0 

Query: 140 LRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPA 199
           LRPT+ + + + ++                            E GF  +E   +  R  A
Sbjct: 339 LRPTMEYFRSLNVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGFGLDEIGIMISRYGA 398

Query: 200 IFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLH 259
           ++ +S++EN+ PK++Y    M+    EL +FP +F +SL+ RI PR+  +++  +R+ L+
Sbjct: 399 LYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLN 458

Query: 260 RMLLWSDQKF 270
           ++L  S  +F
Sbjct: 459 QVLSLSGIEF 467

[Close]
BLAST of Carg26485 vs. TrEMBL
Match: tr|A0A1S3BZK0|A0A1S3BZK0_CUCME (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495186 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 9.8e-109
Identity = 208/283 (73.50%), Postives = 234/283 (82.69%), Query Frame = 0 

Query: 1   MAVGA--LSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVGA  LS  F  +SS SH  TPT    SR P   PP +NFRT+H  NLRYLKSL+++D
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
            + T+FRSPDAV  IL TVHFLKSKGFSDSDFP LAF CP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
           AD+SASIQESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RFLQE+GFS+EEA+KVC RMPAIFGYSV+ENLRPKYEYLV  MERD+EELK FP
Sbjct: 181 KLRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Carg26485 vs. TrEMBL
Match: tr|A0A0A0K870|A0A0A0K870_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 8.3e-108
Identity = 202/283 (71.38%), Postives = 232/283 (81.98%), Query Frame = 0 

Query: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]
BLAST of Carg26485 vs. TrEMBL
Match: tr|A0A059BAH6|A0A059BAH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G00475 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.9e-89
Identity = 159/265 (60.00%), Postives = 213/265 (80.38%), Query Frame = 0 

Query: 12  TISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLD--SRSTKFRSPDAVHSILAT 71
           TI + + +++P     P +L FRT+H  N+RYL++L ++D  SR  K  SPD +  +L  
Sbjct: 21  TIKACTKASSPYQ---PLYLRFRTSHVENVRYLRTLGVIDPVSRHRKLPSPDTIDRVLNI 80

Query: 72  VHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCP 131
           V+FLKSKGFS+SDFP LA+LCP LF+ + +PTDIAPVF+FL  ++SAS QES  +I +CP
Sbjct: 81  VNFLKSKGFSESDFPRLAYLCPGLFASELDPTDIAPVFEFLTVEVSASAQESCSLINKCP 140

Query: 132 RLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEE 191
           ++LFSDVE CL+PTL +L+Q+GI  LN PS L +HLLNTRVEKL GK +FL+ +G +H+E
Sbjct: 141 QILFSDVEYCLKPTLNYLRQLGIGRLNFPSTLNAHLLNTRVEKLHGKVKFLRSIGLTHQE 200

Query: 192 AAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHL 251
            A++C R+P+IFGYS++ NLRPKY+YLV +MER++EELK+FP YFAFSLE+RIAPRHLHL
Sbjct: 201 IARICARLPSIFGYSIDNNLRPKYDYLVEDMERNLEELKKFPQYFAFSLEKRIAPRHLHL 260

Query: 252 KQRNLRIPLHRMLLWSDQKFYTKWK 275
           K+RN++IPL+RMLLW D+KFY KWK
Sbjct: 261 KRRNVKIPLNRMLLWGDEKFYAKWK 282

[Close]
BLAST of Carg26485 vs. TrEMBL
Match: tr|A0A1R3GZ89|A0A1R3GZ89_9ROSI (Mitochodrial transcription termination factor-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_32465 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.9e-88
Identity = 158/251 (62.95%), Postives = 201/251 (80.08%), Query Frame = 0 

Query: 26  PPPPFLNFRTAHYHNLRYLKSLHLLDS--RSTKFRSPDAVHSILATVHFLKSKGFSDSDF 85
           P P ++ FRT+H  N+RYLK++ ++D   +     SP  V  +LATV+FLKSKG  D DF
Sbjct: 14  PTPHYIKFRTSHRENIRYLKAVGIIDPTVKPRNLPSPQTVDQVLATVNFLKSKGIHDQDF 73

Query: 86  PTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDVELCLRPT 145
             LAFLCPQLFS +F+ ++I PVFDFL ADL AS++ESRG+I+ CP++LFSDVE CLRPT
Sbjct: 74  SRLAFLCPQLFSTNFDASEIEPVFDFLIADLHASVEESRGLIVHCPQILFSDVEYCLRPT 133

Query: 146 LRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPAIFGY 205
           L +L+++G+E LN PS  K+ LLNTRVEKLR K RFL+ +G ++EEAA  C RMPAIFGY
Sbjct: 134 LEYLRKLGVEKLNEPSKQKAFLLNTRVEKLRAKLRFLRSIGLNYEEAASFCARMPAIFGY 193

Query: 206 SVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLHRMLL 265
           ++++NL PK+E+LVNEMER +EELKEFP YFAFSL +RI PRH HLKQRN+RI L+RMLL
Sbjct: 194 NIDDNLMPKFEFLVNEMERSLEELKEFPQYFAFSLHKRIEPRHWHLKQRNVRIKLNRMLL 253

Query: 266 WSDQKFYTKWK 275
           WSD++FYTKWK
Sbjct: 254 WSDERFYTKWK 264

[Close]
BLAST of Carg26485 vs. TrEMBL
Match: tr|W9R114|W9R114_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026956 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.3e-88
Identity = 163/255 (63.92%), Postives = 204/255 (80.00%), Query Frame = 0 

Query: 22  PTSRPPPPFLNFRTAHYHNLRYLKSLHLL--DSRSTKFRSPDAVHSILATVHFLKSKGFS 81
           P +  P  F+ FRT+H  NLRYLK+L ++  D +      PD V  ILA V FLKSKGFS
Sbjct: 34  PPTFTPSRFIKFRTSHRENLRYLKTLGIVTADDKPKNLPLPDDVERILAAVDFLKSKGFS 93

Query: 82  DSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDVELC 141
           ++DFP LAFL P LFSP F+P  IAPVFDFLA+D++A  +ES  +ILRCP LLFS+VE C
Sbjct: 94  NADFPRLAFLSPNLFSPGFDPAGIAPVFDFLASDVAALPEESCRLILRCPALLFSNVEYC 153

Query: 142 LRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPA 201
           LRPTL +L+++G+E LN+P+ L +HLLNTRVEKL+ K +FL+ +G S++E+A++C R+PA
Sbjct: 154 LRPTLDYLRKLGLERLNSPTTLNAHLLNTRVEKLQKKMKFLRSIGLSYDESARICARIPA 213

Query: 202 IFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLH 261
           IFGYSVE+NLRPKYEYLV EMER ++ELK FP YFAFSL++RI PRHLHLKQRN+RIPL+
Sbjct: 214 IFGYSVEDNLRPKYEYLVWEMERSLDELKRFPQYFAFSLKKRIVPRHLHLKQRNVRIPLN 273

Query: 262 RMLLWSDQKFYTKWK 275
           RMLLW DQKFY KWK
Sbjct: 274 RMLLWGDQKFYAKWK 288

The following BLAST results are available for this feature:
BLAST of Carg26485 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931610.14.9e-15298.91transcription termination factor MTEF1, chloroplastic [Cucurbita moschata][more]
XP_023530124.17.8e-14293.53transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pep... [more]
XP_022988882.15.8e-13790.04transcription termination factor MTEF1, chloroplastic [Cucurbita maxima][more]
XP_008454873.11.5e-10873.50PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo][more]
XP_011658929.11.3e-10771.38PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus] >KGN43986.1 hy... [more]
BLAST of Carg26485 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18870.18.7e-8757.66Mitochondrial transcription termination factor family protein[more]
AT2G03050.12.5e-2537.32Mitochondrial transcription termination factor family protein[more]
AT2G36000.12.6e-2233.89Mitochondrial transcription termination factor family protein[more]
AT2G34620.11.4e-2029.61Mitochondrial transcription termination factor family protein[more]
AT2G21710.14.1e-1237.76Mitochondrial transcription termination factor family protein[more]
BLAST of Carg26485 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84X53|MTEF1_ARATH4.5e-2437.32Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX... [more]
sp|F4IHL3|MTEF2_ARATH7.4e-1137.76Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O... [more]
sp|B6TGN4|MTEF4_MAIZE1.2e-0835.42Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT... [more]
sp|Q6AUK6|MTEF4_ORYSJ1.0e-0734.38Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja... [more]
sp|F4JVI3|MTEF5_ARATH8.5e-0725.38Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O... [more]
BLAST of Carg26485 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BZK0|A0A1S3BZK0_CUCME9.8e-10973.50transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0K870|A0A0A0K870_CUCSA8.3e-10871.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=4 SV=1[more]
tr|A0A059BAH6|A0A059BAH6_EUCGR3.9e-8960.00Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G00475 PE=4 SV... [more]
tr|A0A1R3GZ89|A0A1R3GZ89_9ROSI1.9e-8862.95Mitochodrial transcription termination factor-related protein OS=Corchorus olito... [more]
tr|W9R114|W9R114_9ROSA4.3e-8863.92Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026956 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26485-RACarg26485-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 122..153
e-value: 4.7E-4
score: 29.5
coord: 224..255
e-value: 1.7
score: 17.7
coord: 84..117
e-value: 1600.0
score: 2.3
coord: 158..186
e-value: 100.0
score: 11.7
coord: 191..223
e-value: 1.2E-6
score: 38.0
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 122..269
e-value: 9.3E-33
score: 113.4
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 31..274
e-value: 2.1E-33
score: 117.6
NoneNo IPR availablePANTHERPTHR13068:SF19SUBFAMILY NOT NAMEDcoord: 12..274
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 12..274

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg26485CmaCh11G017840Cucurbita maxima (Rimu)carcmaB0930
Carg26485CmoCh11G013220Cucurbita moschata (Rifu)carcmoB0905
Carg26485Cp4.1LG04g08290Cucurbita pepo (Zucchini)carcpeB0932
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg26485Bottle gourd (USVL1VR-Ls)carlsiB599
Carg26485Watermelon (Charleston Gray)carwcgB0639
Carg26485Watermelon (97103) v1carwmB0657
Carg26485Watermelon (97103) v2carwmbB0684
Carg26485Wax gourdcarwgoB0774