CmoCh11G013220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G013220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial transcription termination factor family protein
Location	Cmo_Chr11 : 9147830 .. 9148654 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTTGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCTCACTCGCTATCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCTACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCCCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCGGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCACCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

mRNA sequence

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTTGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCTCACTCGCTATCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCTACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCCCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCGGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCACCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Coding sequence (CDS)

ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACACTCCCACCTCTAGGCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCACCTCCTCGATTCCCGTAGTACCAAGTTTCGATCTCCCGACGCCGTCCATAGTATCCTTGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCTCACTCGCTATCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCTACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAGGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGACCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCCCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCGGCGATATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCACTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCACCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA

Homology

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BLAST of CmoCh11G013220 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-34
Identity = 89/209 (42.58%), Postives = 126/209 (60.29%), Query Frame = 1


Query: 63  VHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESR 122
           + S+++    L S G S      +  + P L + D + ++I PV  FL+ ++S S Q+  
Sbjct: 62  ISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPE-SEILPVLRFLSNEISISEQDIP 121

Query: 123 GMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQ 182
             I RCPRLL S V+  LRP L FLK +G    +T ++  + LL + VE+ L  K  +L+
Sbjct: 122 KSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLE 181

Query: 183 E-LGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 242
           E LGF+ EE AK+  R PA+  YSV+ NL PK E+ + EM  DV+ELK FP YF+FSLER
Sbjct: 182 EGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLER 241

Query: 243 RIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           +I PRH  LK+  + +PL  ML  SD +F
Sbjct: 242 KIKPRHRLLKEHGILMPLSEMLKVSDGQF 269

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BLAST of CmoCh11G013220 vs. Swiss-Prot
Match: MTEF9_ARATH (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-14
Identity = 58/218 (26.61%), Postives = 105/218 (48.17%), Query Frame = 1


Query: 64  HSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRG 123
           +++ A + FL   G  +S    +    P LFS   +   + P   +L  ++     +   
Sbjct: 253 NNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGK 312

Query: 124 MILRCPRLLFSDVELCLRPTLRFL-KQIGIENLNTPSNLKSH--LLNTRVEK-LRGKFRF 183
           ++   P++L   +++       FL K++G    +    +K H  LL+  ++     +  F
Sbjct: 313 VVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINF 372

Query: 184 LQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLE 243
           L+ +G  + +  KV   +  +   S+E+NL+PKY YLVNE+  +V  L ++P Y + SL+
Sbjct: 373 LRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLD 432

Query: 244 RRIAPRHLHL----KQRNLRIPLHRMLLWSDQKFYTKW 274
           +RI PRH  L    K R    PL   L+ +D+ F  +W
Sbjct: 433 QRIRPRHRFLVELKKVRKGPFPL-SSLVPNDESFCQQW 468

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BLAST of CmoCh11G013220 vs. Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-13
Identity = 58/197 (29.44%), Postives = 99/197 (50.25%), Query Frame = 1


Query: 77  GFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDV 136
           G        + ++ P L+  D + T IAP   FL  ++    +    M+++ P LL + +
Sbjct: 399 GIPKEGMKRILVVKPILYCIDLEKT-IAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSL 458

Query: 137 ELCLRPTLRFL-KQIGI--ENLNTPSNLKSHLLNTRV-EKLRGKFRFLQELGFSHEEAAK 196
              +RP + FL  + G+  +++     +   LL   +  KL    R+   LG    +  +
Sbjct: 459 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 518

Query: 197 VCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQR 256
           +    P +  Y+V +NLRPKY YL   M R +++L EFP +F++SLERRI PRH  + + 
Sbjct: 519 MIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVEN 578

Query: 257 NLRIPLHRMLLWSDQKF 270
            +   L  ML  +D++F
Sbjct: 579 RVNFKLRYMLACTDEEF 592

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BLAST of CmoCh11G013220 vs. TrEMBL
Match: A0A0A0K870_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.0e-107
Identity = 202/283 (71.38%), Postives = 231/283 (81.63%), Query Frame = 1


Query: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LA LCP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CmoCh11G013220 vs. TrEMBL
Match: M5VJL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 9.1e-93
Identity = 176/264 (66.67%), Postives = 207/264 (78.41%), Query Frame = 1


Query: 15  SLSHSNTPTSRPPPP--FLNFRTAHYHNLRYLKSLHLL--DSRSTKFRSPDAVHSILATV 74
           S S S+  TS P PP  F+ FRT++  NLRYLK+L ++  ++   K   PDA   IL+TV
Sbjct: 12  SSSSSSLTTSNPHPPSHFIKFRTSYRENLRYLKTLRIISPETNPKKLPLPDATDQILSTV 71

Query: 75  HFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPR 134
           +FLKSKGFSD DFP LA L P+LFSP  DPTDIAPVFDFLAA+L A    S G+ILRCP 
Sbjct: 72  NFLKSKGFSDPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSSCGLILRCPD 131

Query: 135 LLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEA 194
           LLFSDVE CLRPTL +LKQ+G++ L  P+NL +HLLNTRVEKL+ K RFL+ L  S+EEA
Sbjct: 132 LLFSDVEFCLRPTLHYLKQLGLDKLGAPTNLNAHLLNTRVEKLKRKMRFLRSLTLSYEEA 191

Query: 195 AKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLK 254
           A VC R+PAIFGYSVE+NLRPKYEYLV EM R V+ELK+FP YF FSLE+RI PRHLHLK
Sbjct: 192 ANVCVRLPAIFGYSVEDNLRPKYEYLVKEMGRSVDELKKFPQYFGFSLEKRIVPRHLHLK 251

Query: 255 QRNLRIPLHRMLLWSDQKFYTKWK 275
           +RN+ IPL+RMLLWSDQKFY KWK
Sbjct: 252 ERNVEIPLNRMLLWSDQKFYAKWK 275

[Close]

BLAST of CmoCh11G013220 vs. TrEMBL
Match: D7TQ07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.9e-90
Identity = 167/266 (62.78%), Postives = 209/266 (78.57%), Query Frame = 1


Query: 11  TTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLD--SRSTKFRSPDAVHSILA 70
           ++I S S  +  +S  PP  L FRT+H  NLRYLK+L ++D  ++  KF SP+AV  +L+
Sbjct: 11  SSIKSPSSQSLSSSEHPPYLLRFRTSHRENLRYLKTLGIIDPSTKPHKFPSPEAVDQVLS 70

Query: 71  TVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRC 130
           TV+FLKSKGFS+ DFP L+ LCP+LFS D DPTDI PVFDFL  DL+AS QES  +ILRC
Sbjct: 71  TVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLAASDQESCSLILRC 130

Query: 131 PRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHE 190
           P++L SDVE CLRPTL +L+++G+E LN P++L +HLLNTRVE+L  K RFL+ +G S+E
Sbjct: 131 PQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVERLVAKIRFLRSVGLSYE 190

Query: 191 EAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLH 250
           E+A+ C R PA+FGYS+E NL+PK+ YLV EM+R VEELK FP YFAFSLE RI PRHLH
Sbjct: 191 ESARACGRFPAVFGYSIENNLKPKFNYLVREMKRSVEELKVFPQYFAFSLENRIMPRHLH 250

Query: 251 LKQRNLRIPLHRMLLWSDQKFYTKWK 275
           L+QRN+RI L RMLLWSDQKFY KWK
Sbjct: 251 LEQRNVRISLKRMLLWSDQKFYAKWK 276

[Close]

BLAST of CmoCh11G013220 vs. TrEMBL
Match: W9R114_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 167/276 (60.51%), Postives = 215/276 (77.90%), Query Frame = 1


Query: 1   MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLL--DSRSTKFR 60
           + + + S   ++I+  S S++P +  P  F+ FRT+H  NLRYLK+L ++  D +     
Sbjct: 13  LPLNSFSSSVSSINPHSSSSSPPTFTPSRFIKFRTSHRENLRYLKTLGIVTADDKPKNLP 72

Query: 61  SPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASI 120
            PD V  ILA V FLKSKGFS++DFP LA L P LFSP FDP  IAPVFDFLA+D++A  
Sbjct: 73  LPDDVERILAAVDFLKSKGFSNADFPRLAFLSPNLFSPGFDPAGIAPVFDFLASDVAALP 132

Query: 121 QESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFR 180
           +ES  +ILRCP LLFS+VE CLRPTL +L+++G+E LN+P+ L +HLLNTRVEKL+ K +
Sbjct: 133 EESCRLILRCPALLFSNVEYCLRPTLDYLRKLGLERLNSPTTLNAHLLNTRVEKLQKKMK 192

Query: 181 FLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSL 240
           FL+ +G S++E+A++C R+PAIFGYSVE+NLRPKYEYLV EMER ++ELK FP YFAFSL
Sbjct: 193 FLRSIGLSYDESARICARIPAIFGYSVEDNLRPKYEYLVWEMERSLDELKRFPQYFAFSL 252

Query: 241 ERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           ++RI PRHLHLKQRN+RIPL+RMLLW DQKFY KWK
Sbjct: 253 KKRIVPRHLHLKQRNVRIPLNRMLLWGDQKFYAKWK 288

[Close]

BLAST of CmoCh11G013220 vs. TrEMBL
Match: A0A059BAH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.7e-89
Identity = 160/265 (60.38%), Postives = 212/265 (80.00%), Query Frame = 1


Query: 12  TISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLD--SRSTKFRSPDAVHSILAT 71
           TI + + +++P     P +L FRT+H  N+RYL++L ++D  SR  K  SPD +  +L  
Sbjct: 21  TIKACTKASSPYQ---PLYLRFRTSHVENVRYLRTLGVIDPVSRHRKLPSPDTIDRVLNI 80

Query: 72  VHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCP 131
           V+FLKSKGFS+SDFP LA LCP LF+ + DPTDIAPVF+FL  ++SAS QES  +I +CP
Sbjct: 81  VNFLKSKGFSESDFPRLAYLCPGLFASELDPTDIAPVFEFLTVEVSASAQESCSLINKCP 140

Query: 132 RLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEE 191
           ++LFSDVE CL+PTL +L+Q+GI  LN PS L +HLLNTRVEKL GK +FL+ +G +H+E
Sbjct: 141 QILFSDVEYCLKPTLNYLRQLGIGRLNFPSTLNAHLLNTRVEKLHGKVKFLRSIGLTHQE 200

Query: 192 AAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHL 251
            A++C R+P+IFGYS++ NLRPKY+YLV +MER++EELK+FP YFAFSLE+RIAPRHLHL
Sbjct: 201 IARICARLPSIFGYSIDNNLRPKYDYLVEDMERNLEELKKFPQYFAFSLEKRIAPRHLHL 260

Query: 252 KQRNLRIPLHRMLLWSDQKFYTKWK 275
           K+RN++IPL+RMLLW D+KFY KWK
Sbjct: 261 KRRNVKIPLNRMLLWGDEKFYAKWK 282

[Close]

BLAST of CmoCh11G013220 vs. TAIR10
Match: AT3G18870.1 (AT3G18870.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 316.6 bits (810), Expect = 1.5e-86
Identity = 158/274 (57.66%), Postives = 202/274 (73.72%), Query Frame = 1


Query: 1   MAVGALSRPFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSP 60
           MAV A       +SS S   +P+S  P  +L F+T+H  NLR+L SL ++          
Sbjct: 1   MAVIASLHHLQPLSSFSSPPSPSSSKPL-YLKFQTSHRENLRHLSSLGIVPQNPRLAPPA 60

Query: 61  DAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQE 120
           + +  IL+ V+ LKSKG SD DFP L  LCPQLFSP FD + + PVFDFL  +L AS +E
Sbjct: 61  NDLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEE 120

Query: 121 SRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFL 180
           SRG+I+ CP +LFSDVE CLRPTL +LK++G+ NLN  S   +H+LNTRVEKLR K RFL
Sbjct: 121 SRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFL 180

Query: 181 QELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 240
           + +GF HEEAA+VC R+PAIFGYSVE+NLRPK+E+LV +MER++EELK+FP YFAFSL +
Sbjct: 181 KSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGK 240

Query: 241 RIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           RI PRH HLK++N+R+ L RML+W DQKFY+KWK
Sbjct: 241 RIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273

[Close]

BLAST of CmoCh11G013220 vs. TAIR10
Match: AT2G34620.1 (AT2G34620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 161.8 bits (408), Expect = 6.1e-40
Identity = 89/206 (43.20%), Postives = 132/206 (64.08%), Query Frame = 1


Query: 65  SILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGM 124
           SI + +HFL+SKG   +D P +  +CP++ + D   T++ PVF FL+ DL       R +
Sbjct: 86  SIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVR-TELYPVFMFLSNDLHVPENAFRRV 145

Query: 125 ILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQEL 184
           I +CPRLL S VE  L+P L +L+++G+++L   +     LL + VE  L  K RFL+ +
Sbjct: 146 IKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLESI 205

Query: 185 GFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIA 244
           GFS  EA  +  R PA+F +S+E N +PK +Y ++E++  +E LKEFP YFAFSLE+RI 
Sbjct: 206 GFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIK 265

Query: 245 PRHLHLKQRNLRIPLHRMLLWSDQKF 270
           PRHL   +R L +PL  ML  +D++F
Sbjct: 266 PRHLESMERGLELPLSLMLKSTDEEF 290

[Close]

BLAST of CmoCh11G013220 vs. TAIR10
Match: AT2G03050.1 (AT2G03050.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-35
Identity = 89/209 (42.58%), Postives = 126/209 (60.29%), Query Frame = 1


Query: 63  VHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESR 122
           + S+++    L S G S      +  + P L + D + ++I PV  FL+ ++S S Q+  
Sbjct: 61  ISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPE-SEILPVLRFLSNEISISEQDIP 120

Query: 123 GMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEK-LRGKFRFLQ 182
             I RCPRLL S V+  LRP L FLK +G    +T ++  + LL + VE+ L  K  +L+
Sbjct: 121 KSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLE 180

Query: 183 E-LGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLER 242
           E LGF+ EE AK+  R PA+  YSV+ NL PK E+ + EM  DV+ELK FP YF+FSLER
Sbjct: 181 EGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLER 240

Query: 243 RIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           +I PRH  LK+  + +PL  ML  SD +F
Sbjct: 241 KIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

[Close]

BLAST of CmoCh11G013220 vs. TAIR10
Match: AT2G36000.1 (AT2G36000.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-28
Identity = 94/265 (35.47%), Postives = 138/265 (52.08%), Query Frame = 1


Query: 13  ISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTKFRSPDAVHSILATVHF 72
           I SLS + T T+          ++ +  L YL SL + D  +   R P  + + L+ V  
Sbjct: 53  IPSLSSTTTTTTTTE----TLESSIHEKLIYLDSLGI-DFLTLINRHPPLLSTALSAVES 112

Query: 73  LKSK------GFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSA-SIQESRGMI 132
           +          F+  DF  L  +CP+L +       I PV  FL  ++   SI + R  +
Sbjct: 113 VVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTI-PVITFLLREVGVDSIFDLRQAL 172

Query: 133 LRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE-KLRGKFRFLQELG 192
            R PRLL   V+  LRPTL FL++IGI +     +  ++LL+  V+ KL  +  + ++LG
Sbjct: 173 RRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDYFEKLG 232

Query: 193 FSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAP 252
           FS   A  + +R P +F YS+ EN  PK +YL+ EM RDV E+ EFP YF+FSLE RI P
Sbjct: 233 FSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKP 292

Query: 253 RHLHLKQRNLRIPLHRMLLWSDQKF 270
           RH     + +R PL  ML  ++  F
Sbjct: 293 RHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]

BLAST of CmoCh11G013220 vs. TAIR10
Match: AT1G78930.1 (AT1G78930.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-23
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 1


Query: 119 QESRGMIL-RCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSH---LLNTRVEKLR 178
           +E  G IL RCP +    +E  L+  L FL + G+   + P  +K +   L+    + + 
Sbjct: 420 KEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVL 479

Query: 179 GKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYF 238
            + ++L E+G S  E A + R+   I GYS+++ LRPK+E+LVN ME+ V E+ E+P YF
Sbjct: 480 PRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYF 539

Query: 239 AFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKF 270
           ++SLE+RI PR   LK RN+   L  ML  +D++F
Sbjct: 540 SYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

[Close]

BLAST of CmoCh11G013220 vs. NCBI nr
Match: gi|659109777|ref|XP_008454873.1| (PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 1.7e-108
Identity = 208/283 (73.50%), Postives = 233/283 (82.33%), Query Frame = 1


Query: 1   MAVGA--LSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVGA  LS  F  +SS SH  TPT    SR P   PP +NFRT+H  NLRYLKSL+++D
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLA 120
            + T+FRSPDAV  IL TVHFLKSKGFSDSDFP LA  CP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
           AD+SASIQESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RFLQE+GFS+EEA+KVC RMPAIFGYSV+ENLRPKYEYLV  MERD+EELK FP
Sbjct: 181 KLRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CmoCh11G013220 vs. NCBI nr
Match: gi|778725293|ref|XP_011658929.1| (PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 1.4e-107
Identity = 202/283 (71.38%), Postives = 231/283 (81.63%), Query Frame = 1


Query: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LA LCP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CmoCh11G013220 vs. NCBI nr
Match: gi|658042746|ref|XP_008356998.1| (PREDICTED: uncharacterized protein LOC103420736 [Malus domestica])

HSP 1 Score: 352.1 bits (902), Expect = 9.0e-94
Identity = 178/268 (66.42%), Postives = 212/268 (79.10%), Query Frame = 1


Query: 9   PFTTISSLSHSNTPTSRPPPPFLNFRTAHYHNLRYLKSLHLLDSRST--KFRSPDAVHSI 68
           P ++ SS++  N P   PP  F+ FRT++  NLRYLK+L ++   ++  K   PDA   I
Sbjct: 15  PSSSSSSIATLN-PNPHPPSHFIKFRTSYRENLRYLKTLRIISPETSPKKLPLPDATDQI 74

Query: 69  LATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMIL 128
           LATV FLKSKGF+DSDFP LA L P+LFSP  DPTDIAPVFDFLA+DLSA    S G+IL
Sbjct: 75  LATVGFLKSKGFTDSDFPRLAFLSPKLFSPSLDPTDIAPVFDFLASDLSADPAFSCGLIL 134

Query: 129 RCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFS 188
           RCP LLF+DVE CLRPTL +L+Q+GI+   +PSNL +HLLNTRVEKL+ K RFL+ LG S
Sbjct: 135 RCPDLLFADVEFCLRPTLHYLEQLGIDKPKSPSNLNAHLLNTRVEKLKKKMRFLRSLGLS 194

Query: 189 HEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRH 248
           +EEAA VC R+PAIFGYSVE+NLRPKYEYLV +M R VEELK+FP YF FSLE+RI PRH
Sbjct: 195 YEEAANVCARLPAIFGYSVEDNLRPKYEYLVKDMGRSVEELKKFPQYFGFSLEKRIVPRH 254

Query: 249 LHLKQRNLRIPLHRMLLWSDQKFYTKWK 275
           LHLK+RN+ IPL+RMLLWSDQKFYTKWK
Sbjct: 255 LHLKERNVEIPLNRMLLWSDQKFYTKWK 281

[Close]

BLAST of CmoCh11G013220 vs. NCBI nr
Match: gi|1009165028|ref|XP_015900819.1| (PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba])

HSP 1 Score: 350.5 bits (898), Expect = 2.6e-93
Identity = 168/255 (65.88%), Postives = 212/255 (83.14%), Query Frame = 1


Query: 22  PTSRPPPPFLNFRTAHYHNLRYLKSLHLLD--SRSTKFRSPDAVHSILATVHFLKSKGFS 81
           PT   PP F+ FRT+H  NLRYLK+L ++D  ++      PD V  IL TV FLKSKGFS
Sbjct: 29  PTPNQPPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDDVDQILLTVDFLKSKGFS 88

Query: 82  DSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDVELC 141
           DSDFP LA L P+LFS + DPTDIAPVFDFLAADLSAS++++R +IL+CP +LFSDVE C
Sbjct: 89  DSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTRRLILQCPPILFSDVEYC 148

Query: 142 LRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPA 201
           LRPTL +L+++G+E L+ P++L +HLLNTRVEKLR K  FL+ +G S++E+++VC R+PA
Sbjct: 149 LRPTLHYLRKLGLERLDRPTSLNAHLLNTRVEKLRMKIGFLRRIGLSYDESSRVCARVPA 208

Query: 202 IFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLH 261
           IFGYS+EENL+PKYEYLV EMER++EELK+FP YFAFSLE++I PRHLHLKQRN+RIPL+
Sbjct: 209 IFGYSIEENLKPKYEYLVMEMERNLEELKKFPQYFAFSLEKKIKPRHLHLKQRNVRIPLN 268

Query: 262 RMLLWSDQKFYTKWK 275
           RML+WSDQ+FY KWK
Sbjct: 269 RMLIWSDQRFYAKWK 283

[Close]

BLAST of CmoCh11G013220 vs. NCBI nr
Match: gi|1009164985|ref|XP_015900794.1| (PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba])

HSP 1 Score: 348.6 bits (893), Expect = 1.0e-92
Identity = 167/255 (65.49%), Postives = 212/255 (83.14%), Query Frame = 1


Query: 22  PTSRPPPPFLNFRTAHYHNLRYLKSLHLLD--SRSTKFRSPDAVHSILATVHFLKSKGFS 81
           PT   PP F+ FRT+H  NLRYLK+L ++D  ++      PD V  IL TV FLKSKGFS
Sbjct: 30  PTPNQPPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDDVDQILLTVDFLKSKGFS 89

Query: 82  DSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPRLLFSDVELC 141
           DSDFP LA L P+LFS + DPTDIAPVFDFLAADLSAS++++R +IL+CP +LFSDVE C
Sbjct: 90  DSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTRRLILQCPPILFSDVEYC 149

Query: 142 LRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPA 201
           LRPTL +L+++G+E L+ P++L +HLLNTRVEKLR K  FL+ +G S++E+++VC R+PA
Sbjct: 150 LRPTLHYLRKLGLERLDRPTSLNAHLLNTRVEKLRMKIGFLRRIGLSYDESSRVCARVPA 209

Query: 202 IFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFSLERRIAPRHLHLKQRNLRIPLH 261
           IFGYS+EENL+PKYEYLV EMER++EELK+FP YFAFSLE++I PRHLHLKQR++RIPL+
Sbjct: 210 IFGYSIEENLKPKYEYLVMEMERNLEELKKFPQYFAFSLEKKIKPRHLHLKQRSVRIPLN 269

Query: 262 RMLLWSDQKFYTKWK 275
           RML+WSDQ+FY KWK
Sbjct: 270 RMLIWSDQRFYAKWK 284

The following BLAST results are available for this feature:

BLAST of CmoCh11G013220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MTEF1_ARATH	3.6e-34	42.58	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN...	[more]
MTEF9_ARATH	2.4e-14	26.61	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana G...	[more]
MTEF2_ARATH	1.6e-13	29.44	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana G...	[more]

BLAST of CmoCh11G013220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K870_CUCSA	1.0e-107	71.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1	[more]
M5VJL2_PRUPE	9.1e-93	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1	[more]
D7TQ07_VITVI	1.9e-90	62.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=...	[more]
W9R114_9ROSA	1.6e-89	60.51	Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1	[more]
A0A059BAH6_EUCGR	2.7e-89	60.38	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1	[more]

BLAST of CmoCh11G013220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18870.1	1.5e-86	57.66	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	6.1e-40	43.20	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	2.0e-35	42.58	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	7.0e-28	35.47	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	6.8e-23	38.06	Mitochondrial transcription termination factor family protein	[more]

BLAST of CmoCh11G013220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109777\|ref\|XP_008454873.1\|	1.7e-108	73.50	PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo]	[more]
gi\|778725293\|ref\|XP_011658929.1\|	1.4e-107	71.38	PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus]	[more]
gi\|658042746\|ref\|XP_008356998.1\|	9.0e-94	66.42	PREDICTED: uncharacterized protein LOC103420736 [Malus domestica]	[more]
gi\|1009165028\|ref\|XP_015900819.1\|	2.6e-93	65.88	PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba]	[more]
gi\|1009164985\|ref\|XP_015900794.1\|	1.0e-92	65.49	PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G013220.1	CmoCh11G013220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 119..269 score: 6.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 191..223 score: 1.2E-6coord: 224..255 score: 1.7coord: 122..153 score: 4.7E-4coord: 84..117 score: 950.0coord: 158..186 score: 1
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 27..273 score: 2.5E
None	No IPR available	PANTHER	PTHR13068:SF19	SUBFAMILY NOT NAMED	coord: 27..273 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G013220	Cucsa.220350	Cucumber (Gy14) v1	cgycmoB0624
CmoCh11G013220	CmaCh11G017840	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G013220	MELO3C018405	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G013220	ClCG02G005300	Watermelon (Charleston Gray)	cmowcgB088
CmoCh11G013220	Cp4.1LG04g08290	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G013220	MELO3C018405.2	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G013220	Cla97C02G032320	Watermelon (97103) v2	cmowmbB088
CmoCh11G013220	Bhi05G001050	Wax gourd	cmowgoB0119
CmoCh11G013220	Carg26485	Silver-seed gourd	carcmoB0905

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G013220	Bottle gourd (USVL1VR-Ls)	cmolsiB079
CmoCh11G013220	Bottle gourd (USVL1VR-Ls)	cmolsiB089
CmoCh11G013220	Bottle gourd (USVL1VR-Ls)	cmolsiB140
CmoCh11G013220	Cucumber (Gy14) v2	cgybcmoB156
CmoCh11G013220	Melon (DHL92) v3.6.1	cmomedB123
CmoCh11G013220	Silver-seed gourd	carcmoB0292
CmoCh11G013220	Cucumber (Chinese Long) v3	cmocucB0123
CmoCh11G013220	Watermelon (97103) v2	cmowmbB128
CmoCh11G013220	Watermelon (97103) v2	cmowmbB142
CmoCh11G013220	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh11G013220	Cucurbita maxima (Rimu)	cmacmoB494
CmoCh11G013220	Wild cucumber (PI 183967)	cmocpiB111
CmoCh11G013220	Cucumber (Chinese Long) v2	cmocuB108
CmoCh11G013220	Melon (DHL92) v3.5.1	cmomeB077
CmoCh11G013220	Watermelon (Charleston Gray)	cmowcgB076
CmoCh11G013220	Watermelon (97103) v1	cmowmB076
CmoCh11G013220	Watermelon (97103) v1	cmowmB109
CmoCh11G013220	Cucurbita pepo (Zucchini)	cmocpeB095