CmaCh11G017840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G017840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMitochondrial transcription termination factor family protein
LocationCma_Chr11 : 11933514 .. 11934446 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGGAGCTCTCTCTCACCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACTCTCCCACCTCTAGACCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTCCCATAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGTTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTTGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACACTCAGATTCCTGAAGCAAATAGGGCTTGAGAATCTGAACACGCCCAGCAATCTAAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCACACGAGGAGGCAGCAAAAGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCGAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATCTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTCTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCAACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGATATGTAAATGTTTTGTTGGTTTATATTGAACTCATAATTCCTTCAAACAGAGTTAGTAGTGACAGGGCAGGGGGTTCAACAAGTTAA

mRNA sequence

ATGGCGGTTGGAGCTCTCTCTCACCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACTCTCCCACCTCTAGACCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTCCCATAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGTTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTTGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACACTCAGATTCCTGAAGCAAATAGGGCTTGAGAATCTGAACACGCCCAGCAATCTAAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCACACGAGGAGGCAGCAAAAGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCGAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATCTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTCTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCAACAGAATGCTCTTAGTTAGTAGTGACAGGGCAGGGGGTTCAACAAGTTAA

Coding sequence (CDS)

ATGGCGGTTGGAGCTCTCTCTCACCCATTCACCACCATCTCTTCCCTCTCTCATTCCAACTCTCCCACCTCTAGACCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTCCCATAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGTTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTTGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTCGATCCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCCGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACACTCAGATTCCTGAAGCAAATAGGGCTTGAGAATCTGAACACGCCCAGCAATCTAAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCACACGAGGAGGCAGCAAAAGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCGAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATCTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTCTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCAACAGAATGCTCTTAGTTAGTAGTGACAGGGCAGGGGGTTCAACAAGTTAA

Protein sequence

MAVGALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVSSDRAGGSTS
Homology
[Close]
BLAST of CmaCh11G017840 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-34
Identity = 95/231 (41.13%), Postives = 136/231 (58.87%), Query Frame = 1 

Query: 48  LRYLKSLRLLDSHSTKFRSPDA----VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSP 107
           L YL+ L + D H     +P      + S+++    L S G S      +  + P L + 
Sbjct: 37  LIYLQDLNV-DPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTS 96

Query: 108 DFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLN 167
           D + ++I PV  FL+ ++S S Q+    I RCP+LL S V+  LRP L FLK +G    +
Sbjct: 97  DPE-SEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 156

Query: 168 TPSNLKSHLLNTRVEK-LRGKFRFLQE-LGFSHEEAAKVCRRMPALFGYSVEENLRPKYE 227
           T ++  + LL + VE+ L  K  +L+E LGF+ EE AK+  R PAL  YSV+ NL PK E
Sbjct: 157 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 216

Query: 228 YLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVS 273
           + + EM  D++ELK FPQYF+FSLER+I PRH  LK+  + +PL+ ML VS
Sbjct: 217 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 265

[Close]
BLAST of CmaCh11G017840 vs. Swiss-Prot
Match: MTEF9_ARATH (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-12
Identity = 53/207 (25.60%), Postives = 100/207 (48.31%), Query Frame = 1 

Query: 71  HSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRG 130
           +++ A + FL   G  +S    +    P LFS   +   + P   +L  ++     +   
Sbjct: 253 NNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGK 312

Query: 131 MILRCPKLLFSDVELCLRPTLRFL-KQIGLENLNTPSNLKSH--LLNTRVEK-LRGKFRF 190
           ++   P++L   +++       FL K++G    +    +K H  LL+  ++     +  F
Sbjct: 313 VVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINF 372

Query: 191 LQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLE 250
           L+ +G  + +  KV   +  +   S+E+NL+PKY YLVNE+  ++  L ++P Y + SL+
Sbjct: 373 LRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLD 432

Query: 251 RRIAPRHLHL----KQRNLRIPLNRML 270
           +RI PRH  L    K R    PL+ ++
Sbjct: 433 QRIRPRHRFLVELKKVRKGPFPLSSLV 458

[Close]
BLAST of CmaCh11G017840 vs. Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-12
Identity = 56/181 (30.94%), Postives = 91/181 (50.28%), Query Frame = 1 

Query: 98  PQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQ- 157
           P L+  D + T IAP   FL  ++    +    M+++ P LL + +   +RP + FL   
Sbjct: 413 PILYCIDLEKT-IAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 472

Query: 158 --IGLENLNTPSNLKSHLLNTRV-EKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVE 217
             +  +++     +   LL   +  KL    R+   LG    +  ++    P L  Y+V 
Sbjct: 473 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV- 532

Query: 218 ENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVSS 275
           +NLRPKY YL   M R L++L EFP++F++SLERRI PRH  + +  +   L  ML  + 
Sbjct: 533 DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTD 590

[Close]
BLAST of CmaCh11G017840 vs. Swiss-Prot
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-12
Identity = 53/198 (26.77%), Postives = 100/198 (50.51%), Query Frame = 1 

Query: 76  TVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMIL-R 135
           T+ FL++ G   + +  +    P + +  +    +    +FL+   +   +E  G IL R
Sbjct: 271 TMAFLETLGIDKNQWAKIISRFPAILT--YSRQKLTSTVEFLSQ--TGLTEEQIGRILTR 330

Query: 136 CPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSH 195
           CP ++   VE  LRPT+ + + + ++              +    L+    F  E GF  
Sbjct: 331 CPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGL 390

Query: 196 EEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHL 255
           +E   +  R  AL+ +S++EN+ PK++Y    M+    EL +FPQ+F +SL+ RI PR+ 
Sbjct: 391 DEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYE 450

Query: 256 HLKQRNLRIPLNRMLLVS 273
            +++  +R+ LN++L +S
Sbjct: 451 LVQRSGVRLLLNQVLSLS 463

[Close]
BLAST of CmaCh11G017840 vs. TrEMBL
Match: A0A0A0K870_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-104
Identity = 199/277 (71.84%), Postives = 223/277 (80.51%), Query Frame = 1 

Query: 1   MAVG--ALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60
           MAVG   LSH F  + S SH  +PT       P   PP +NFRT+H  N+RYLKSL ++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120
              T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERDLEELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVSSDR 276
           QYF FSLE RI PRHLHLKQR L IPLN MLL S +R
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNR 276

[Close]
BLAST of CmaCh11G017840 vs. TrEMBL
Match: M5VJL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.2e-86
Identity = 170/263 (64.64%), Postives = 203/263 (77.19%), Query Frame = 1 

Query: 15  SLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLL--DSHSTKFRSPDAVHS 74
           S S S+  TS P P     P  F+ FRT++  NLRYLK+LR++  +++  K   PDA   
Sbjct: 12  SSSSSSLTTSNPHP-----PSHFIKFRTSYRENLRYLKTLRIISPETNPKKLPLPDATDQ 71

Query: 75  ILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMI 134
           IL+TV+FLKSKGFSD DFP LAFL P+LFSP  DPTDIAPVFDFLAA+L A    S G+I
Sbjct: 72  ILSTVNFLKSKGFSDPDFPRLAFLSPKLFSPTLDPTDIAPVFDFLAAELPADPSSSCGLI 131

Query: 135 LRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGF 194
           LRCP LLFSDVE CLRPTL +LKQ+GL+ L  P+NL +HLLNTRVEKL+ K RFL+ L  
Sbjct: 132 LRCPDLLFSDVEFCLRPTLHYLKQLGLDKLGAPTNLNAHLLNTRVEKLKRKMRFLRSLTL 191

Query: 195 SHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPR 254
           S+EEAA VC R+PA+FGYSVE+NLRPKYEYLV EM R ++ELK+FPQYF FSLE+RI PR
Sbjct: 192 SYEEAANVCVRLPAIFGYSVEDNLRPKYEYLVKEMGRSVDELKKFPQYFGFSLEKRIVPR 251

Query: 255 HLHLKQRNLRIPLNRMLLVSSDR 276
           HLHLK+RN+ IPLNRMLL S  +
Sbjct: 252 HLHLKERNVEIPLNRMLLWSDQK 269

[Close]
BLAST of CmaCh11G017840 vs. TrEMBL
Match: W9R114_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.7e-84
Identity = 166/272 (61.03%), Postives = 209/272 (76.84%), Query Frame = 1 

Query: 1   MAVGALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLL--D 60
           +++ +LS P  + SS   S +P S     P  +P  F+ FRT+H  NLRYLK+L ++  D
Sbjct: 6   LSLSSLSLPLNSFSSSVSSINPHSSSSSPPTFTPSRFIKFRTSHRENLRYLKTLGIVTAD 65

Query: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120
                   PD V  ILA V FLKSKGFS++DFP LAFL P LFSP FDP  IAPVFDFLA
Sbjct: 66  DKPKNLPLPDDVERILAAVDFLKSKGFSNADFPRLAFLSPNLFSPGFDPAGIAPVFDFLA 125

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180
           +D++A  +ES  +ILRCP LLFS+VE CLRPTL +L+++GLE LN+P+ L +HLLNTRVE
Sbjct: 126 SDVAALPEESCRLILRCPALLFSNVEYCLRPTLDYLRKLGLERLNSPTTLNAHLLNTRVE 185

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240
           KL+ K +FL+ +G S++E+A++C R+PA+FGYSVE+NLRPKYEYLV EMER L+ELK FP
Sbjct: 186 KLQKKMKFLRSIGLSYDESARICARIPAIFGYSVEDNLRPKYEYLVWEMERSLDELKRFP 245

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLL 271
           QYFAFSL++RI PRHLHLKQRN+RIPLNRMLL
Sbjct: 246 QYFAFSLKKRIVPRHLHLKQRNVRIPLNRMLL 277

[Close]
BLAST of CmaCh11G017840 vs. TrEMBL
Match: A0A059BAH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.3e-83
Identity = 150/246 (60.98%), Postives = 199/246 (80.89%), Query Frame = 1 

Query: 32  PSPPPFLNFRTAHSHNLRYLKSLRLLD--SHSTKFRSPDAVHSILATVHFLKSKGFSDSD 91
           P  P +L FRT+H  N+RYL++L ++D  S   K  SPD +  +L  V+FLKSKGFS+SD
Sbjct: 31  PYQPLYLRFRTSHVENVRYLRTLGVIDPVSRHRKLPSPDTIDRVLNIVNFLKSKGFSESD 90

Query: 92  FPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRP 151
           FP LA+LCP LF+ + DPTDIAPVF+FL  ++SAS QES  +I +CP++LFSDVE CL+P
Sbjct: 91  FPRLAYLCPGLFASELDPTDIAPVFEFLTVEVSASAQESCSLINKCPQILFSDVEYCLKP 150

Query: 152 TLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALFG 211
           TL +L+Q+G+  LN PS L +HLLNTRVEKL GK +FL+ +G +H+E A++C R+P++FG
Sbjct: 151 TLNYLRQLGIGRLNFPSTLNAHLLNTRVEKLHGKVKFLRSIGLTHQEIARICARLPSIFG 210

Query: 212 YSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRML 271
           YS++ NLRPKY+YLV +MER+LEELK+FPQYFAFSLE+RIAPRHLHLK+RN++IPLNRML
Sbjct: 211 YSIDNNLRPKYDYLVEDMERNLEELKKFPQYFAFSLEKRIAPRHLHLKRRNVKIPLNRML 270

Query: 272 LVSSDR 276
           L   ++
Sbjct: 271 LWGDEK 276

[Close]
BLAST of CmaCh11G017840 vs. TrEMBL
Match: D7TQ07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.3e-82
Identity = 161/265 (60.75%), Postives = 204/265 (76.98%), Query Frame = 1 

Query: 13  ISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSHST--KFRSPDAV 72
           I ++S   SP+S+   S    PP  L FRT+H  NLRYLK+L ++D  +   KF SP+AV
Sbjct: 7   IPTISSIKSPSSQSLSSSE-HPPYLLRFRTSHRENLRYLKTLGIIDPSTKPHKFPSPEAV 66

Query: 73  HSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRG 132
             +L+TV+FLKSKGFS+ DFP L+FLCP+LFS D DPTDI PVFDFL  DL+AS QES  
Sbjct: 67  DQVLSTVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLAASDQESCS 126

Query: 133 MILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQEL 192
           +ILRCP++L SDVE CLRPTL +L+++G+E LN P++L +HLLNTRVE+L  K RFL+ +
Sbjct: 127 LILRCPQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVERLVAKIRFLRSV 186

Query: 193 GFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIA 252
           G S+EE+A+ C R PA+FGYS+E NL+PK+ YLV EM+R +EELK FPQYFAFSLE RI 
Sbjct: 187 GLSYEESARACGRFPAVFGYSIENNLKPKFNYLVREMKRSVEELKVFPQYFAFSLENRIM 246

Query: 253 PRHLHLKQRNLRIPLNRMLLVSSDR 276
           PRHLHL+QRN+RI L RMLL S  +
Sbjct: 247 PRHLHLEQRNVRISLKRMLLWSDQK 270

[Close]
BLAST of CmaCh11G017840 vs. TAIR10
Match: AT3G18870.1 (AT3G18870.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-82
Identity = 155/270 (57.41%), Postives = 198/270 (73.33%), Query Frame = 1 

Query: 1   MAVGALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSH 60
           MAV A  H    +SS S         PPSP  S P +L F+T+H  NLR+L SL ++  +
Sbjct: 1   MAVIASLHHLQPLSSFSS--------PPSPSSSKPLYLKFQTSHRENLRHLSSLGIVPQN 60

Query: 61  STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAAD 120
                  + +  IL+ V+ LKSKG SD DFP L FLCPQLFSP FD + + PVFDFL  +
Sbjct: 61  PRLAPPANDLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGE 120

Query: 121 LSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKL 180
           L AS +ESRG+I+ CP +LFSDVE CLRPTL +LK++G+ NLN  S   +H+LNTRVEKL
Sbjct: 121 LGASAEESRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKL 180

Query: 181 RGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQY 240
           R K RFL+ +GF HEEAA+VC R+PA+FGYSVE+NLRPK+E+LV +MER+LEELK+FPQY
Sbjct: 181 RAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQY 240

Query: 241 FAFSLERRIAPRHLHLKQRNLRIPLNRMLL 271
           FAFSL +RI PRH HLK++N+R+ L+RML+
Sbjct: 241 FAFSLGKRIRPRHWHLKKKNVRVSLSRMLM 262

[Close]
BLAST of CmaCh11G017840 vs. TAIR10
Match: AT2G34620.1 (AT2G34620.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 161.8 bits (408), Expect = 6.3e-40
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 1 

Query: 72  SILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGM 131
           SI + +HFL+SKG   +D P +  +CP++ + D   T++ PVF FL+ DL       R +
Sbjct: 86  SIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVR-TELYPVFMFLSNDLHVPENAFRRV 145

Query: 132 ILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEK-LRGKFRFLQEL 191
           I +CP+LL S VE  L+P L +L+++GL++L   +     LL + VE  L  K RFL+ +
Sbjct: 146 IKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLESI 205

Query: 192 GFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIA 251
           GFS  EA  +  R PALF +S+E N +PK +Y ++E++  LE LKEFPQYFAFSLE+RI 
Sbjct: 206 GFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIK 265

Query: 252 PRHLHLKQRNLRIPLNRML 270
           PRHL   +R L +PL+ ML
Sbjct: 266 PRHLESMERGLELPLSLML 283

[Close]
BLAST of CmaCh11G017840 vs. TAIR10
Match: AT2G03050.1 (AT2G03050.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-35
Identity = 95/231 (41.13%), Postives = 136/231 (58.87%), Query Frame = 1 

Query: 48  LRYLKSLRLLDSHSTKFRSPDA----VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSP 107
           L YL+ L + D H     +P      + S+++    L S G S      +  + P L + 
Sbjct: 36  LIYLQDLNV-DPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTS 95

Query: 108 DFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLN 167
           D + ++I PV  FL+ ++S S Q+    I RCP+LL S V+  LRP L FLK +G    +
Sbjct: 96  DPE-SEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 155

Query: 168 TPSNLKSHLLNTRVEK-LRGKFRFLQE-LGFSHEEAAKVCRRMPALFGYSVEENLRPKYE 227
           T ++  + LL + VE+ L  K  +L+E LGF+ EE AK+  R PAL  YSV+ NL PK E
Sbjct: 156 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 215

Query: 228 YLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVS 273
           + + EM  D++ELK FPQYF+FSLER+I PRH  LK+  + +PL+ ML VS
Sbjct: 216 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 264

[Close]
BLAST of CmaCh11G017840 vs. TAIR10
Match: AT2G36000.1 (AT2G36000.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-26
Identity = 99/291 (34.02%), Postives = 144/291 (49.48%), Query Frame = 1 

Query: 5   ALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPF--------LNFRTAHSHNLRYLKS--- 64
           +L H F ++S L  +N P     P+   S   F        L+  T  +     L+S   
Sbjct: 15  SLHHNFPSLSRLRFNNFPALSFKPNTSSSSSSFFKSPDIPSLSSTTTTTTTTETLESSIH 74

Query: 65  --LRLLDSHSTKF-----RSPDAVHSILATVHFLKSK------GFSDSDFPTLAFLCPQL 124
             L  LDS    F     R P  + + L+ V  +          F+  DF  L  +CP+L
Sbjct: 75  EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134

Query: 125 FSPDFDPTDIAPVFDFLAADLSA-SIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGL 184
            +       I PV  FL  ++   SI + R  + R P+LL   V+  LRPTL FL++IG+
Sbjct: 135 LTSPLTSHTI-PVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGI 194

Query: 185 ENLNTPSNLKSHLLNTRVE-KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRP 244
            +     +  ++LL+  V+ KL  +  + ++LGFS   A  + +R P LF YS+ EN  P
Sbjct: 195 LD----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEP 254

Query: 245 KYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRML 270
           K +YL+ EM RD+ E+ EFPQYF+FSLE RI PRH     + +R PL  ML
Sbjct: 255 KLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

[Close]
BLAST of CmaCh11G017840 vs. TAIR10
Match: AT1G78930.1 (AT1G78930.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-21
Identity = 55/148 (37.16%), Postives = 89/148 (60.14%), Query Frame = 1 

Query: 126 QESRGMIL-RCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSH---LLNTRVEKLR 185
           +E  G IL RCP++    +E  L+  L FL + G+   + P  +K +   L+    + + 
Sbjct: 420 KEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVL 479

Query: 186 GKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYF 245
            + ++L E+G S  E A + R+   + GYS+++ LRPK+E+LVN ME+ + E+ E+P+YF
Sbjct: 480 PRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYF 539

Query: 246 AFSLERRIAPRHLHLKQRNLRIPLNRML 270
           ++SLE+RI PR   LK RN+   L  ML
Sbjct: 540 SYSLEKRIKPRFRVLKGRNIECTLQEML 567

[Close]
BLAST of CmaCh11G017840 vs. NCBI nr
Match: gi|659109777|ref|XP_008454873.1| (PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 4.0e-105
Identity = 204/277 (73.65%), Postives = 226/277 (81.59%), Query Frame = 1 

Query: 1   MAVGA--LSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60
           MAVGA  LSH F  +SS SH  +PT       P   PP +NFRT+H  NLRYLKSL ++D
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120
              T+FRSPDAV  IL TVHFLKSKGFSDSDFP LAF CP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180
           AD+SASIQESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 ADISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240
           KLR K RFLQE+GFS+EEA+KVC RMPA+FGYSV+ENLRPKYEYLV  MERDLEELK FP
Sbjct: 181 KLRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVSSDR 276
           QYF FSLE RI PRHLHLKQR L IPLN MLL S +R
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNR 276

[Close]
BLAST of CmaCh11G017840 vs. NCBI nr
Match: gi|778725293|ref|XP_011658929.1| (PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 4.4e-104
Identity = 199/277 (71.84%), Postives = 223/277 (80.51%), Query Frame = 1 

Query: 1   MAVG--ALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60
           MAVG   LSH F  + S SH  +PT       P   PP +NFRT+H  N+RYLKSL ++D
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120
              T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120

Query: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180

Query: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERDLEELK FP
Sbjct: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240

Query: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLVSSDR 276
           QYF FSLE RI PRHLHLKQR L IPLN MLL S +R
Sbjct: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNR 276

[Close]
BLAST of CmaCh11G017840 vs. NCBI nr
Match: gi|1009165028|ref|XP_015900819.1| (PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba])

HSP 1 Score: 332.0 bits (850), Expect = 9.9e-88
Identity = 170/266 (63.91%), Postives = 213/266 (80.08%), Query Frame = 1 

Query: 14  SSLSHSNSPTSRPPP--SPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSHS--TKFRSPDA 73
           SS S S + T++P      P  PP F+ FRT+H  NLRYLK+L ++D  +       PD 
Sbjct: 12  SSSSSSFTKTTKPKTLYPTPNQPPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDD 71

Query: 74  VHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESR 133
           V  IL TV FLKSKGFSDSDFP LAFL P+LFS + DPTDIAPVFDFLAADLSAS++++R
Sbjct: 72  VDQILLTVDFLKSKGFSDSDFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTR 131

Query: 134 GMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQE 193
            +IL+CP +LFSDVE CLRPTL +L+++GLE L+ P++L +HLLNTRVEKLR K  FL+ 
Sbjct: 132 RLILQCPPILFSDVEYCLRPTLHYLRKLGLERLDRPTSLNAHLLNTRVEKLRMKIGFLRR 191

Query: 194 LGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRI 253
           +G S++E+++VC R+PA+FGYS+EENL+PKYEYLV EMER+LEELK+FPQYFAFSLE++I
Sbjct: 192 IGLSYDESSRVCARVPAIFGYSIEENLKPKYEYLVMEMERNLEELKKFPQYFAFSLEKKI 251

Query: 254 APRHLHLKQRNLRIPLNRMLLVSSDR 276
            PRHLHLKQRN+RIPLNRML+ S  R
Sbjct: 252 KPRHLHLKQRNVRIPLNRMLIWSDQR 277

[Close]
BLAST of CmaCh11G017840 vs. NCBI nr
Match: gi|1009164985|ref|XP_015900794.1| (PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba])

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 163/247 (65.99%), Postives = 204/247 (82.59%), Query Frame = 1 

Query: 31  PPSPPPFLNFRTAHSHNLRYLKSLRLLDSHS--TKFRSPDAVHSILATVHFLKSKGFSDS 90
           P  PP F+ FRT+H  NLRYLK+L ++D  +       PD V  IL TV FLKSKGFSDS
Sbjct: 32  PNQPPHFIKFRTSHRENLRYLKTLGVIDPQTKPNNLPLPDDVDQILLTVDFLKSKGFSDS 91

Query: 91  DFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLR 150
           DFP LAFL P+LFS + DPTDIAPVFDFLAADLSAS++++R +IL+CP +LFSDVE CLR
Sbjct: 92  DFPRLAFLSPELFSSNLDPTDIAPVFDFLAADLSASVEDTRRLILQCPPILFSDVEYCLR 151

Query: 151 PTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALF 210
           PTL +L+++GLE L+ P++L +HLLNTRVEKLR K  FL+ +G S++E+++VC R+PA+F
Sbjct: 152 PTLHYLRKLGLERLDRPTSLNAHLLNTRVEKLRMKIGFLRRIGLSYDESSRVCARVPAIF 211

Query: 211 GYSVEENLRPKYEYLVNEMERDLEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLNRM 270
           GYS+EENL+PKYEYLV EMER+LEELK+FPQYFAFSLE++I PRHLHLKQR++RIPLNRM
Sbjct: 212 GYSIEENLKPKYEYLVMEMERNLEELKKFPQYFAFSLEKKIKPRHLHLKQRSVRIPLNRM 271

Query: 271 LLVSSDR 276
           L+ S  R
Sbjct: 272 LIWSDQR 278

[Close]
BLAST of CmaCh11G017840 vs. NCBI nr
Match: gi|658042746|ref|XP_008356998.1| (PREDICTED: uncharacterized protein LOC103420736 [Malus domestica])

HSP 1 Score: 329.7 bits (844), Expect = 4.9e-87
Identity = 173/273 (63.37%), Postives = 210/273 (76.92%), Query Frame = 1 

Query: 6   LSHPFTTISSLSHSNSPTSRPPPSPPPSPPP-FLNFRTAHSHNLRYLKSLRLLDSHST-- 65
           L H  + I   S S+S +S    +P P PP  F+ FRT++  NLRYLK+LR++   ++  
Sbjct: 3   LLHTLSIIPPPSPSSSSSSIATLNPNPHPPSHFIKFRTSYRENLRYLKTLRIISPETSPK 62

Query: 66  KFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAADLS 125
           K   PDA   ILATV FLKSKGF+DSDFP LAFL P+LFSP  DPTDIAPVFDFLA+DLS
Sbjct: 63  KLPLPDATDQILATVGFLKSKGFTDSDFPRLAFLSPKLFSPSLDPTDIAPVFDFLASDLS 122

Query: 126 ASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKLRG 185
           A    S G+ILRCP LLF+DVE CLRPTL +L+Q+G++   +PSNL +HLLNTRVEKL+ 
Sbjct: 123 ADPAFSCGLILRCPDLLFADVEFCLRPTLHYLEQLGIDKPKSPSNLNAHLLNTRVEKLKK 182

Query: 186 KFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQYFA 245
           K RFL+ LG S+EEAA VC R+PA+FGYSVE+NLRPKYEYLV +M R +EELK+FPQYF 
Sbjct: 183 KMRFLRSLGLSYEEAANVCARLPAIFGYSVEDNLRPKYEYLVKDMGRSVEELKKFPQYFG 242

Query: 246 FSLERRIAPRHLHLKQRNLRIPLNRMLLVSSDR 276
           FSLE+RI PRHLHLK+RN+ IPLNRMLL S  +
Sbjct: 243 FSLEKRIVPRHLHLKERNVEIPLNRMLLWSDQK 275

The following BLAST results are available for this feature:
BLAST of CmaCh11G017840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF1_ARATH3.7e-3441.13Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN... [more]
MTEF9_ARATH1.0e-1225.60Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF2_ARATH1.8e-1230.94Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana G... [more]
MTEF5_ARATH3.0e-1226.77Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana G... [more]
BLAST of CmaCh11G017840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K870_CUCSA3.1e-10471.84Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075660 PE=4 SV=1[more]
M5VJL2_PRUPE2.2e-8664.64Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021045mg PE=4 SV=1[more]
W9R114_9ROSA2.7e-8461.03Uncharacterized protein OS=Morus notabilis GN=L484_026956 PE=4 SV=1[more]
A0A059BAH6_EUCGR1.3e-8360.98Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00475 PE=4 SV=1[more]
D7TQ07_VITVI4.3e-8260.75Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02460 PE=4 SV=... [more]
BLAST of CmaCh11G017840 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18870.13.0e-8257.41 Mitochondrial transcription termination factor family protein[more]
AT2G34620.16.3e-4045.23 Mitochondrial transcription termination factor family protein[more]
AT2G03050.12.1e-3541.13 Mitochondrial transcription termination factor family protein[more]
AT2G36000.18.8e-2634.02 Mitochondrial transcription termination factor family protein[more]
AT1G78930.13.8e-2137.16 Mitochondrial transcription termination factor family protein[more]
BLAST of CmaCh11G017840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109777|ref|XP_008454873.1|4.0e-10573.65PREDICTED: uncharacterized protein LOC103495186 [Cucumis melo][more]
gi|778725293|ref|XP_011658929.1|4.4e-10471.84PREDICTED: uncharacterized protein LOC101203623 [Cucumis sativus][more]
gi|1009165028|ref|XP_015900819.1|9.9e-8863.91PREDICTED: uncharacterized protein LOC107433934 [Ziziphus jujuba][more]
gi|1009164985|ref|XP_015900794.1|1.7e-8765.99PREDICTED: uncharacterized protein LOC107433911 [Ziziphus jujuba][more]
gi|658042746|ref|XP_008356998.1|4.9e-8763.37PREDICTED: uncharacterized protein LOC103420736 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0071472 cellular response to salt stress
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G017840.1CmaCh11G017840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 130..274
score: 1.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 198..230
score: 1.9E-6coord: 165..193
score: 100.0coord: 91..124
score: 1500.0coord: 129..160
score: 0.0019coord: 231..262
score: 0.42coord: 54..86
score: 20
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 34..275
score: 7.1E
NoneNo IPR availablePANTHERPTHR13068:SF19SUBFAMILY NOT NAMEDcoord: 34..275
score: 7.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G017840MELO3C018405Melon (DHL92) v3.5.1cmameB098
CmaCh11G017840CSPI07G08120Wild cucumber (PI 183967)cmacpiB143
CmaCh11G017840CmoCh11G013220Cucurbita moschata (Rifu)cmacmoB117
CmaCh11G017840Cp4.1LG04g08290Cucurbita pepo (Zucchini)cmacpeB154
CmaCh11G017840MELO3C018405.2Melon (DHL92) v3.6.1cmamedB106
CmaCh11G017840CsaV3_7G010220Cucumber (Chinese Long) v3cmacucB0171
CmaCh11G017840CsGy7G007670Cucumber (Gy14) v2cgybcmaB895
CmaCh11G017840Carg26485Silver-seed gourdcarcmaB0930
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G017840Bottle gourd (USVL1VR-Ls)cmalsiB092
CmaCh11G017840Watermelon (97103) v2cmawmbB104
CmaCh11G017840Wax gourdcmawgoB0118
CmaCh11G017840Cucumber (Gy14) v1cgycmaB0620
CmaCh11G017840Cucumber (Chinese Long) v2cmacuB146
CmaCh11G017840Watermelon (Charleston Gray)cmawcgB101
CmaCh11G017840Watermelon (97103) v1cmawmB127