Cp4.1LG04g08000 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g08000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionE3 ubiquitin-protein ligase RMA1-like protein
LocationCp4.1LG04 : 3543550 .. 3547993 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGCCTTTCATTTGGGTTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTTCTGCACGACCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCTCTCACGATTCCTTGTTCTTTGATTTCATTCCATTATTTGCTTTTCTTCCATCTTTGATCCATTCGTAATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCCCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCCTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTAAGTTTCCGACTCTTTTGCCTTTTCTTTTTTGCTGTTTCTTGGAAGTATGATGTGGGTTTTCCTCGGTATGAACGAGTTGTGTGTTGATTGTACTTTGTTTTCCCTTTCAACGTAGCACTTGGAGATCGTGTGGTGTGTGACCTATTTTTTGTGTACTGGAAACTAATATGTCTGATTATGAGAGATTTTTGTTGTTTCTTTAGATATTTTTAATGCTGAAGTGGTCTTGGTGTACCTCCCATTTGGGTTTATTTTAAACCTGCAATACAGGGGTGGTTGTACTTGTATATTATTGCAGTTTCAATGCCTTGTGTTCACCGTTTTTCCCTTTGTGCTTCAATGGCCATGGAGGAGAAATTCTTTTGCAATGCTCGGTTTTGTTGTTACTCTAATTTTTTTTCTTTTTCTGTGGAGTATCAGTTTTAGTGTTCGGGCTTCTTCAAATTAAATCATGGATGAATTTTGAGTCAAGTCTTTTAGATTCATTTTTTTTTAAATGAGCTTTGATTCTTTGAATTTCTCAAGTTTTAGCAGTTCTGTTTATACAGGATTCATTTTGAATATCTAAGCCTAAGGATTGAACTCTATATTAGGGAACAATTTGAAAATTTCATGTGAAAAAAATGGGGAATGGTTTCATTAATTGTCGATCAGAGTCATGTCCTCCTAATTTTAGTTAAAAAAAACTTTTGATCCAACTTTAGGGACATTTTTCTTTGAGGTGCAAATTTTCACAATTGAATGGGAAGGCGGAAATGGGGTTCTTAATTGAAAATTTATGAACAGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCCTATCTCATTCCTCTACTTCCTTAATGATTTGCTCTTGTTATATATATTTTTTAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTATCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAGCAGTGTACTCCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATAGGAGACACTTAAGAAACACGAAAAACTCCTATCGATCTGCCAGAAGTTCACAGCAGGTCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGGTAATTTTCATTGATGTCATATGTTTTATATACTCTGTTATGTTAATTCTTAAATACTATTTTCTGTTGTCTAAGTACATTATATGCCTTCCCAGCCTCTGGCAGTGACACACACCTGAACTCAACGATCATTGATTCTACCTTCTAATTTATACATCAAAATCTGTAACCTATATCCGCACTATGCATGTACATAGTGATAGTGATTTGACTATATACTTCATGTTTTATTGTTGTTCCTTGAAATCATATTTTGTAATGGTGAAGGTTTTTGCAATAATTGTTCTAGTACTCACCATCTTTGGCACCCTTCAGGTGCACTCATTTTTCTGAGTTAGTTTTGTGATTGATGTACCAATATGGCGATTTCTTCGTGGTGTTCCCACTAGTTTGCCACTTTGCTTGCACCACATGAAGTCCTGCAAATTTTCTGTCCAATCTTATTACGTGTTTGTTGAATTTTGTGTTCACAAATGTAATCCCTCCGGAGGTAAGAAGAATATGAGAGGGTTTCTGGAGTTAAAGATTTGACTTACAGCATTTGAGTTGTCAAGTTGGTACATCAAGCTTAGGATATTGTGTTATCTTCTTAGCAATGAAAATTCTCTATATTCTAATATATTAATGGGATAGTTTTAACATGGTGATCTTCTTAGCACTGGAAATTCTCTATAATCAAATATGTTAATGGGATAGATTTAGTATGGTTATCTTCTTAGCAATGGAAATTCTTTATATTCTAATATATTAATGGGATAGTTTTAGCATTGTTATCTTCTTAGCAATGGTATTAATGGGACAGTTTTAACATGATTTACAGTGTTGTGATACGTTCTTCCCTTGCATGATTTTTAGTGTTTATGCTAGGGACACAAGATTTAGGGTCACAATTCTTCATGCAATTTCACAATTTATAATTCATGGATGACTGATTGCTTATCTTTTCTATTTGAAGTTGTTTGATGTATATTTATAAGTGAAAAAGTAGGAAGTATTTTATTTAAAGTTAGATGAACATTGTAGTACAATGTATTAGTGGAAAAAACGAATAAAACCGAGTAGATGTTATTATGATGGACTGCATTCTGGATATTGATGAACTGCAAGATGAAGCCAGAGTGATGGTGCTAATTCTAGGACAGTAGTCAGTTGCTGTTTCAGAATGAATAAGCAGACAATTCTTGGGATAATAACACTTTAGTTGAATTAGAGGAGCCATGAGGCATAAGGAATTAGCCTTCTTTCATGAATGAAAAGGATTCCGACATTCAATATTGGAGTTGAAGGAAGAGAAAAGAGCAGTCTTGGTGACACTCTAATGGGTCTCAATTTTCCTGTAGAGTAGAAGAACTGCTGAAGAATAGTTTCCCTGTTATGGGTCAAATGAACGACAAAATTATTTGAATCTTTGAGCATAAGGAGATTTAAAGCTTACCTTTGACAAAGCTGAATGACTCATGCATTCATAATTAAGCAGGAAATAACAAATAAATGTTTCTTAAGGGCACAATCCCGCTTGTTTAATTCAAGGATCAATCCCTTGGCTAGGTTGAATTCTTCCTGTCCCATCTCAAGTGCATGATGCCGTACTCTCTGTTAAAGAAGTCTCCTCGACATTGCCTGCTTGGAATTTAACACATCAACTTAATAAGATTCATAATTTCTATGGACCTTATGAATTTTCTACGTTTTTTTGGGGTGATGTAGGATGAGATGTTAGATAATCAGTCCAGTTTAGTATTTTGGATTTAATTAGTTCTTTGGTTATTTTATTGCAAGGCTATGAATACCCTCCGGGGCGCTTTTGAATATTATTTGAAATATCACTTCGTTTTTAGAGGATGTTCACTAACTGTTGTCAAGCTAACTTGGTGCTCTTTTGTCATTGTCTTCTATGCAGAAGTTTCCGATCAAAACTTTGTGGATAATCATCCAGGAGAGGTGTCTGGTGGCATGCCTAATGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTACAACTCGGGATTGCCTTCGATTTTTTCTCTTTGGAAAACTTATAATTGCATTGTACGAGGTGTATCAAAGACCAAATTTGCTACTATTTGATCCTGCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAAAAGCCAGACGCCACACTGTCTTCAGAACATCCTCAAAACTTGATGCCTCCAAATTCAGATTTGTGTTACTTTATGAGATGGAGCTGACAACATTTCATTCCAACATGTGAAAAATGGTCTGTTCAAGCTCGCTAGCCAAATACGACATGGTTTTGTTTTCGATTCGAAAGAGCATTGTAAAGAAAACAAGGGAAATGGCGGCCATAATTCTTGACCAGAAGATGTGCAGCAAGAAGGAGAAAATATGTTTGTATATGGTACAAACTAAACTTTTTCCTAGTTCAAATATTGAGTTAAATATATGTTAACCCTTTCTTTTCTCCTGTTTTCCTTTTTCTTAGAGGTTGAAAAAATGGAAATTCTAATAGGGTGTAGGTTATTGAATATAGGTATTAGTTATACAGAAGCTAAGACACCCTGATAGTGAGATAGATACACACTTTTTTAGTTTGTTTCAAATACTCTCGTTTTGAACCTCTGTTAGGAATCTCAAGTGTAAATTATTATTAGGAGTCTTCCAACTGAAATTTTCATACATGTTCATACAACACCCTATATACGTTATGTTACACAACTTGTTTATTATTATTATTATTATTTCATATT

mRNA sequence

TGGAGCCTTTCATTTGGGTTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTTCTGCACGACCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCTCTCACGATTCCTTGTTCTTTGATTTCATTCCATTATTTGCTTTTCTTCCATCTTTGATCCATTCGTAATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCCCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCCTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTATCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAGCAGTGTACTCCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATAGGAGACACTTAAGAAACACGAAAAACTCCTATCGATCTGCCAGAAGTTCACAGCAGGTCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGAAGTTTCCGATCAAAACTTTGTGGATAATCATCCAGGAGAGGTGTCTGGTGGCATGCCTAATGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAAAAGCCAGACGCCACACTGTCTTCAGAACATCCTCAAAACTTGATGCCTCCAAATTCAGATTTGTGTTACTTTATGAGATGGAGCTGACAACATTTCATTCCAACATGTGAAAAATGGTCTGTTCAAGCTCGCTAGCCAAATACGACATGGTTTTGTTTTCGATTCGAAAGAGCATTGTAAAGAAAACAAGGGAAATGGCGGCCATAATTCTTGACCAGAAGATGTGCAGCAAGAAGGAGAAAATATGTTTGTATATGGTACAAACTAAACTTTTTCCTAGTTCAAATATTGAGTTAAATATATGTTAACCCTTTCTTTTCTCCTGTTTTCCTTTTTCTTAGAGGTTGAAAAAATGGAAATTCTAATAGGGTGTAGGTTATTGAATATAGGTATTAGTTATACAGAAGCTAAGACACCCTGATAGTGAGATAGATACACACTTTTTTAGTTTGTTTCAAATACTCTCGTTTTGAACCTCTGTTAGGAATCTCAAGTGTAAATTATTATTAGGAGTCTTCCAACTGAAATTTTCATACATGTTCATACAACACCCTATATACGTTATGTTACACAACTTGTTTATTATTATTATTATTATTTCATATT

Coding sequence (CDS)

ATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCCCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCCTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTATCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAGCAGTGTACTCCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATAGGAGACACTTAAGAAACACGAAAAACTCCTATCGATCTGCCAGAAGTTCACAGCAGGTCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGAAGTTTCCGATCAAAACTTTGTGGATAATCATCCAGGAGAGGTGTCTGGTGGCATGCCTAATGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAA

Protein sequence

MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQKANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTKNSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSANDQVVPYKRPSLER
BLAST of Cp4.1LG04g08000 vs. TrEMBL
Match: A0A0A0K7Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073620 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 9.8e-89
Identity = 177/249 (71.08%), Postives = 199/249 (79.92%), Query Frame = 1

Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSLTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +SPP+ DRQ P P  S+ +D T  NS+S+SSS+T+D  K F  SH C QLDA QT
Sbjct: 5   HTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHR YL SLEASFVQ+LHQ+R + ALS KQKMR +P  P ISSSELMVLQDASWQ
Sbjct: 65  HWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQDASWQ 124

Query: 130 KANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTK 189
           KANIGRNDPLL++ AD PAIL+D+WIN FPSAGKQC+ ETPDLLEE  S SDRRH+R   
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHIRYMT 184

Query: 190 NSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAND 249
           NS RSAR+SQ   PCC  SYTIITEVSDQNFVDN PGE+S GMP AKRLKKASSD S + 
Sbjct: 185 NSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSA 244

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 253

BLAST of Cp4.1LG04g08000 vs. TrEMBL
Match: A0A061E1R5_THECC (Cold regulated gene 27, putative isoform 2 OS=Theobroma cacao GN=TCM_007069 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 92/239 (38.49%), Postives = 130/239 (54.39%), Query Frame = 1

Query: 26  SPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFV 85
           S +  S+LT  NS S   ++T++ F+D  ++   Q  ++   WT+EKH  YL  LEASFV
Sbjct: 18  SQACVSELTRTNSDSSGCAVTIESFRDPTANARPQGQSMV--WTNEKHNLYLDFLEASFV 77

Query: 86  QELHQYRRLQALSSKQKM------RCRPSMPHISSSELMVLQDASWQKANIGRNDPLLER 145
           ++LH    L    SK+++      +  P+  H SS ++ +LQD   QK +   NDPLL+ 
Sbjct: 78  KQLHCSISLHGCHSKEEIWGSYPTQKLPAKGHNSSDQISILQDGCCQKIDYESNDPLLDS 137

Query: 146 IADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTKN-SYRSARSSQQ- 205
            AD   IL   WI  F SAGK  +   P +  E+   +D  +L++  N SY+SARSSQ  
Sbjct: 138 TADSNQILGSPWIEHFRSAGKSSSSTFP-VPTETAVLNDGIYLKSNSNVSYKSARSSQHH 197

Query: 206 -VPPCCRESYTIIT-EVSDQNFVDNHPGEVSGGMPNAKRLK-KASSDSSANDQVVPYKR 254
            +   C +S    T EVSDQNF D   G+    +  AKRLK  A   +S+N QVVP  R
Sbjct: 198 LIFHSCNQSLDCCTPEVSDQNFADEDQGKKISCVSGAKRLKMTAMLGASSNSQVVPLGR 253

BLAST of Cp4.1LG04g08000 vs. TrEMBL
Match: A0A061DZZ1_THECC (Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_007069 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 92/239 (38.49%), Postives = 128/239 (53.56%), Query Frame = 1

Query: 26  SPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFV 85
           S +  S+LT  NS S   ++T++ F+D  ++       V   WT+EKH  YL  LEASFV
Sbjct: 18  SQACVSELTRTNSDSSGCAVTIESFRDPTANARPGQSMV---WTNEKHNLYLDFLEASFV 77

Query: 86  QELHQYRRLQALSSKQKM------RCRPSMPHISSSELMVLQDASWQKANIGRNDPLLER 145
           ++LH    L    SK+++      +  P+  H SS ++ +LQD   QK +   NDPLL+ 
Sbjct: 78  KQLHCSISLHGCHSKEEIWGSYPTQKLPAKGHNSSDQISILQDGCCQKIDYESNDPLLDS 137

Query: 146 IADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTKN-SYRSARSSQQ- 205
            AD   IL   WI  F SAGK  +   P +  E+   +D  +L++  N SY+SARSSQ  
Sbjct: 138 TADSNQILGSPWIEHFRSAGKSSSSTFP-VPTETAVLNDGIYLKSNSNVSYKSARSSQHH 197

Query: 206 -VPPCCRESYTIIT-EVSDQNFVDNHPGEVSGGMPNAKRLK-KASSDSSANDQVVPYKR 254
            +   C +S    T EVSDQNF D   G+    +  AKRLK  A   +S+N QVVP  R
Sbjct: 198 LIFHSCNQSLDCCTPEVSDQNFADEDQGKKISCVSGAKRLKMTAMLGASSNSQVVPLGR 252

BLAST of Cp4.1LG04g08000 vs. TrEMBL
Match: B9RYH7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813320 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 94/229 (41.05%), Postives = 117/229 (51.09%), Query Frame = 1

Query: 38  SQSYSSSLTVDRFKDF-PSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQA 97
           S S SS++TVD FKD  PS          T WTDEKH  Y+ SLEA+FV +LH    L+ 
Sbjct: 41  SCSDSSAITVDSFKDLGPS----------TVWTDEKHSLYIDSLEAAFVNQLHHSIALRG 100

Query: 98  -----LSSKQKMRCRPSMPHISSSELMVLQDASWQKANIGRNDPLLERIADYPAILDDVW 157
                L      R  P     SS +LMVL+D SWQ  N  RN PLLE  AD   I +   
Sbjct: 101 SLQEILLGPYSSRALPKNSRNSSHKLMVLRDGSWQNINSRRNKPLLESTADSHYIQEIPC 160

Query: 158 INRFPSAGKQCTPETPDLLEESGSFSDRRHLR-NTKNSYRSARSSQQVPPCCR---ESYT 217
            + F SAGK+      DL    G  S+R H   N+  S   ARSS Q   C      S  
Sbjct: 161 TSHFSSAGKRRIVACHDL-HHGGLCSERIHAAGNSPVSCGLARSSGQHSACSLCYCNSDG 220

Query: 218 IITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSANDQVVPYKRPSL 257
           I  EVSDQNFVD+  GE S  M   K+LK   +D+S+ D++VP +  ++
Sbjct: 221 IALEVSDQNFVDDDGGEKSSCMATVKKLKIVGTDASSYDKIVPLRNSNI 258

BLAST of Cp4.1LG04g08000 vs. TrEMBL
Match: A0A067L4Z6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01597 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-22
Identity = 99/266 (37.22%), Postives = 123/266 (46.24%), Query Frame = 1

Query: 3   DHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLD 62
           D   +L H   S SP   D    +    ++LT  NS S  S++T D  KDF  +  +   
Sbjct: 2   DEKENLRHNMPSASP---DHGAMTAGCVTELTRTNSNS--SAITADSSKDFSLNSAISAP 61

Query: 63  AVQTHWTDEKHRSYLGSLEASFVQELHQYRRL--------------QALSSKQKMRCRPS 122
                WTDEKHR YL SLEASFV +LH    L              +ALS+     C P 
Sbjct: 62  GPCAVWTDEKHRLYLDSLEASFVNQLHHSIALRDCLQEVSLGTCSSEALSTNS---CNP- 121

Query: 123 MPHISSSELMVLQDASWQKANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPD 182
                S + MVLQD SW+     RN PL E  +    +  ++    F S  K+      D
Sbjct: 122 -----SHQFMVLQDGSWKNITPKRNKPLSESTSSSRFVEKNILTGHFTSTSKRQFAACHD 181

Query: 183 LLEESGSFSDRRH-LRNTKNSYRSARSSQQVPPCC---RESYTIITEVSDQNFVDNHPGE 242
             E S S S R H + N+     SARSSQQ P C       + I  EVSDQNF D +   
Sbjct: 182 -QEHSASSSRRIHGVGNSAVYCGSARSSQQHPACSLSHDNPFGIAIEVSDQNFEDKNHKV 241

Query: 243 VSGGMPNAKRLKKASSDSSANDQVVP 251
            S  M   KRLK   +DSS+NDQVVP
Sbjct: 242 KSSSMSMVKRLKIVGADSSSNDQVVP 252

BLAST of Cp4.1LG04g08000 vs. TAIR10
Match: AT5G42900.1 (AT5G42900.1 cold regulated gene 27)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-10
Identity = 62/199 (31.16%), Postives = 92/199 (46.23%), Query Frame = 1

Query: 64  VQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRP---SMPHISSSELMVL 123
           ++T WT+EKH  YL S+EASFV +L  Y  L AL   + +       S    S  +  VL
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQL--YNSLGALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 124 QDASWQKANIGRNDPLL--ERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSD 183
            D  WQK N+ + +  +      +    L   WI  +    K   P T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 184 RRHLRNTKNSYRSARSSQQVPPCCRESYTII---TEVSDQNFVDNHPGEVSGGMPNAKRL 243
               +    S  SA S +Q+    R+   I     EVSDQNFV+     + G   ++K++
Sbjct: 164 G---KKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNE---GIKGENGSSKKM 223

Query: 244 KKA-SSDSSANDQVVPYKR 254
           K    S+SS+ DQVVP  +
Sbjct: 224 KTVMMSESSSTDQVVPLNK 234

BLAST of Cp4.1LG04g08000 vs. TAIR10
Match: AT4G33980.2 (AT4G33980.2 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 69/236 (29.24%), Postives = 103/236 (43.64%), Query Frame = 1

Query: 21  DRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSL 80
           DR     S+ S      S S  S +T +  +   S    +LD   T WT+EKH SYL  L
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSR---SDADSKLDEC-TAWTNEKHNSYLDYL 74

Query: 81  EASFVQELHQYRRLQALSSKQKMRCR--PSMPHISSSELMVLQDASWQKANIGRNDPLLE 140
           E+SFV++L+    L    +++  R R   S  H S+ +  VLQ+  WQK N G+    LE
Sbjct: 75  ESSFVRQLYS---LLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQSCLE 134

Query: 141 RIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTKNSYRSARSSQQV 200
             +++          RF     +  PE                  N+  +Y    + Q  
Sbjct: 135 TSSEF----------RFHRNSLRNKPE------------------NSNGNYTMGTTVQGD 194

Query: 201 PPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSA--NDQVVPYK 253
             C  E  T  +E S QNF +    E  G + + KR ++A++D S+   DQVVP +
Sbjct: 195 VLCHDE--TKHSEASGQNFREEEEEEEKGEV-SKKREREANNDDSSLKEDQVVPVR 212

BLAST of Cp4.1LG04g08000 vs. NCBI nr
Match: gi|659109923|ref|XP_008454952.1| (PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90
Identity = 182/249 (73.09%), Postives = 201/249 (80.72%), Query Frame = 1

Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSLTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +S P+ DRQ P P  SS +D T  NS+S+SSS+TVD  K F  SH CLQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHRSYL SLEASFVQ LHQ+RR+ ALSSKQKMR +P M   SSSELMVLQDASWQ
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 130 KANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTK 189
           KANIGRNDPLL++ AD PAIL+D+WIN FPSAGKQC+ ETPDLLEE GS SDRRH+R+  
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 190 NSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAND 249
           NS  SAR+SQQ  PCC  SYTIITEVSDQNFVDN PGE+SGGMP AKRLKKASS    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 253

BLAST of Cp4.1LG04g08000 vs. NCBI nr
Match: gi|449438404|ref|XP_004136978.1| (PREDICTED: uncharacterized protein LOC101204925 isoform X1 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 1.4e-88
Identity = 177/249 (71.08%), Postives = 199/249 (79.92%), Query Frame = 1

Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSLTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +SPP+ DRQ P P  S+ +D T  NS+S+SSS+T+D  K F  SH C QLDA QT
Sbjct: 5   HTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHR YL SLEASFVQ+LHQ+R + ALS KQKMR +P  P ISSSELMVLQDASWQ
Sbjct: 65  HWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQDASWQ 124

Query: 130 KANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTK 189
           KANIGRNDPLL++ AD PAIL+D+WIN FPSAGKQC+ ETPDLLEE  S SDRRH+R   
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHIRYMT 184

Query: 190 NSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAND 249
           NS RSAR+SQ   PCC  SYTIITEVSDQNFVDN PGE+S GMP AKRLKKASSD S + 
Sbjct: 185 NSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSA 244

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 253

BLAST of Cp4.1LG04g08000 vs. NCBI nr
Match: gi|659109926|ref|XP_008454953.1| (PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 137/249 (55.02%), Postives = 157/249 (63.05%), Query Frame = 1

Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSLTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +S P+ DRQ P P  SS +D T  NS+S+SSS+TVD  K F  SH CLQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHRSYL SLEASFVQ LHQ+RR         M    S   +    +M+   +S  
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRR---------MHALSSKQKMRRKPIMLDTSSSEV 124

Query: 130 KANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTK 189
           + +I +                        S  KQC+ ETPDLLEE GS SDRRH+R+  
Sbjct: 125 RQHIHKK-----------------------SGRKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 190 NSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAND 249
           NS  SAR+SQQ  PCC  SYTIITEVSDQNFVDN PGE+SGGMP AKRLKKASS    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 221

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 221

BLAST of Cp4.1LG04g08000 vs. NCBI nr
Match: gi|778725103|ref|XP_011658902.1| (PREDICTED: uncharacterized protein LOC101204925 isoform X2 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 6.0e-55
Identity = 137/250 (54.80%), Postives = 159/250 (63.60%), Query Frame = 1

Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSLTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +SPP+ DRQ P P  S+ +D T  NS+S+SSS+T+D  K F  SH C QLDA QT
Sbjct: 5   HTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHR YL SLEASFVQ+LHQ+R + ALS KQK                        
Sbjct: 65  HWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK------------------------ 124

Query: 130 KANIGRNDPLLERIADYPAILDDVWINRFPSAG-KQCTPETPDLLEESGSFSDRRHLRNT 189
                R  P+   I+       +V  +    +G KQC+ ETPDLLEE  S SDRRH+R  
Sbjct: 125 ----MRRKPIRPDISS-----SEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYM 184

Query: 190 KNSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAN 249
            NS RSAR+SQ   PCC  SYTIITEVSDQNFVDN PGE+S GMP AKRLKKASSD S +
Sbjct: 185 TNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDS 221

Query: 250 DQVVPYKRPS 256
            QVVP+KR S
Sbjct: 245 AQVVPFKRLS 221

BLAST of Cp4.1LG04g08000 vs. NCBI nr
Match: gi|1009150240|ref|XP_015892914.1| (PREDICTED: uncharacterized protein LOC107427085 isoform X3 [Ziziphus jujuba])

HSP 1 Score: 134.0 bits (336), Expect = 3.6e-28
Identity = 95/248 (38.31%), Postives = 123/248 (49.60%), Query Frame = 1

Query: 16  SPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQLDAVQTHWTDEKHRS 75
           +P   D +       S LT  NS +  S+++VD  KDF  H         T WTDE+H  
Sbjct: 11  APTSTDHEATEEGGQSKLTSANSNA--SAISVDNSKDFSLHCATATMGQSTEWTDERHSL 70

Query: 76  YLGSLEASFVQELHQYRRLQALSSKQKM------RCRPSMPHISSSELMVLQDASWQKAN 135
           YL SLEASFV +L++   L     +         R  P   + S  + M  +D  W K N
Sbjct: 71  YLDSLEASFVNDLYRSIYLGGSCLQNNFLGTYSSRAFPDKTNNSGQQFMAPRDGCWTKIN 130

Query: 136 IGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRRHLRNTKNSY 195
             RN  +L    D   +    WI+ F S+GK+   E PDL EE  S ++R H+R     +
Sbjct: 131 YERNGTILNTAVDCHGMTGSPWIHHFTSSGKRQYVEFPDL-EEHTSDNERIHIRGKLTDF 190

Query: 196 RS-ARSSQQVPPC--CRE-SYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASSDSSAN 254
              ARSS   P C  C E S   ITEVSDQNFVD   G  S   P AKR K A+ D+S+N
Sbjct: 191 NGRARSSNHKPVCDKCEEDSVGNITEVSDQNFVDEDHGAKSSRKPTAKRPKAAADDTSSN 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7Z2_CUCSA9.8e-8971.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073620 PE=4 SV=1[more]
A0A061E1R5_THECC1.0e-2438.49Cold regulated gene 27, putative isoform 2 OS=Theobroma cacao GN=TCM_007069 PE=4... [more]
A0A061DZZ1_THECC2.2e-2438.49Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_007069 PE=4... [more]
B9RYH7_RICCO6.5e-2441.05Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813320 PE=4 SV=1[more]
A0A067L4Z6_JATCU4.6e-2237.22Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01597 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G42900.16.2e-1031.16 cold regulated gene 27[more]
AT4G33980.21.8e-0929.24 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|659109923|ref|XP_008454952.1|1.1e-9073.09PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo][more]
gi|449438404|ref|XP_004136978.1|1.4e-8871.08PREDICTED: uncharacterized protein LOC101204925 isoform X1 [Cucumis sativus][more]
gi|659109926|ref|XP_008454953.1|1.6e-5555.02PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo][more]
gi|778725103|ref|XP_011658902.1|6.0e-5554.80PREDICTED: uncharacterized protein LOC101204925 isoform X2 [Cucumis sativus][more]
gi|1009150240|ref|XP_015892914.1|3.6e-2838.31PREDICTED: uncharacterized protein LOC107427085 isoform X3 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08000.1Cp4.1LG04g08000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33676FAMILY NOT NAMEDcoord: 38..253
score: 2.3
NoneNo IPR availablePANTHERPTHR33676:SF4SUBFAMILY NOT NAMEDcoord: 38..253
score: 2.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g08000Cp4.1LG15g04790Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g08000Cp4.1LG06g01600Cucurbita pepo (Zucchini)cpecpeB497