Carg26410 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26410
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cold regulated gene 27, putative isoform 2
Location	Cucurbita_argyrosperma_scaffold_257 : 118987 .. 122893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCTCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCTTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTAAGTTTCCGACTCTTTTGCCTTTTGTTTTTTTGCTGTTTCTTGGAAGTATGATGTGGGTTTTCCTCGGTATGAACGAGTTGTGTGTTGATTGTACTTTGTTTTCCCTTTCAACGTAGCACTTGGAGATCGTGTGGTGTGTGACCTATTTTTTGTGTACTGGAAACTAATATGTCTGATTATGAGAGATTTTTATTGTTTCTTTAGACATTTTTAATGCTGAAGTGGTCTTGGTGTACCTCCCATTTGGGTTTATTTTAAACCTGCAATACAGGGGTGGTATGTACTTGTATATTATTGCAGTTTCGATGCCTTGTGTTCACCGTTTTTCCCTTTGTGCTTCAATGGCCATGGAGGAGAAATTCTTTTGCAATGCTCGATTTTGTTATTACTCTAATTTTCTTTTTCTGTGGAGTATCAGTTTTAGTGTTCGGGCTTCTTCAAATTAAATCATGGATGAATTTTGAGTCACGTCTTTTATAGATTCATTTTTTTTTTGAAATGAACCTTTGATTCTTTGAATTTCTCAAATTTTAGCAGTTCTGTTTATACAGGATTCATTTTGAATATCTAAGCCTAAGGATTGAACTCTATATTAGGGAACAATTTGAAAGTTTCATGTGAAAAAAATGGGGAATGGTTTCATTAATTGTCGATCAGAGTCATGTCCTTCTAATTTTAGTTAAAAAAAACTTTTGATCCAACTTTAGGGACATTTTTCTTTGAGGTGCAAATTTTCACAATTGAATGGAAAGGCGGAAATGGGGTTCTTAATTGGAAATTTATGAACAGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCCTATCTCATTCCTCTACTTCCTTAATGATTTGCTCTTGTTATATATATTTTTTAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTCTCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAACCGTGTACTTCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATGGGAGACACTTAAGAAACACGAAAAACTCCTATCAATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGGTAATTTTCATTGATGTCATATGTTTTATATACTCTGTTATGTTAATTCTTAAATACTATTTTCTGTTGTGTAAGTACATTATATACCCTCCCAGCCTCTGGCAGTGACACACACCTGAACTCAACGATCATTGATTCTACCTTCTAATTTATACTTCAAAATCTGTAACCTATATCCGCACTATGCATGTACATAGCGATAGTGATTGACTATATACTTCATGTTTTATTGTTGTTCCTTGAAATCATATTTTGTAATGGTGAAGGTTTTTGCAATAATTGTTCTAGTACTCACCATCTTTGGCACCCTTCAGGTGCACTCATTTTTTCTGAGTTAGTTTTGTGATTGATGTACCAATATGACAGATTTCTTCGTGGTGTTCCCACTAGTTTGCCACTTTGCTTGCACCACATGAAGTCCTGCAAATTTTATTTCCAATCTTATTACGTGTTTGTTTGAATTTTGTGTTCATCAAATGTATTTCCTCCGGTGGTAAGAAGAATATGAGAGGGTTCCTGGAGTTAAAGATGATATGACTTACAGCATGTGAGTTGTCAAATTGGTACATCAAGCTTAGGATATTGTGTTATCTTCTTAGCAATAAAAATTCTCTATATTCTAATATATTAATGGGATAGTTTTAACATGGTGATCTTCTTAGCACTGGAAATTATCTATATTCAAATATGTTAATGGGATAGATTTAATATGGTTATGTTCTTAGCAATGGTAATTCTTTATATTCTAATATATTAATGGGATAGTTTTTGCATTGTTATCTTCTTAGCAATGGTATTAATGGGACAGTTTTAACATGATTTACAGTGTTGTGATACTTTCTTCCCATTGCATGATTTTTAGTGTTTATGCTAGGGACACAAGATTTAGGGTCACAATTCTTCATGCAATTTCACAATTTATAATTCATGGATGACTGATTGCATATCTTTTCTATTTGAAGTTGCTTGATGTATATTTATAAGTGAAAAAGTAGGAAGTACTTTATTTAAAGTTAGATGAGCATTGTTGTACGATGTATTAGTGGAAAAAACGAATAAAACCGAGTAGATGTTATTATGATGGACTGCATTCTGGATATTGATGAACTGCTAGATGAAGCCAGAGTGATGGTGCTAATTCTAGGACAGTAGTCAGTTGCTGGTTCAGAATGAATAAGCAGACAATTCTTGGGATAATAACACTTTAGTTGAATTAGAGGAGCCATGAGGCATAAGGAATTAGTCTTCTTTCATGAATGTAAAGGATTGGAGTTGAAGGAAGAGAAAAGAGCAGTCTTGGTGACACTCTAATGGGTCTCAATTTTCCTGTAGAGTAGAAAAACTGCTGAAGAATAGTTTCCCTGTTATGGGTCAAATGAACGACAAAATTATTTGAATCTTTGAGCATAAGGAGATTTAAAGCTTACCTTTGACAAAGCTGAATAACTCATTCATTCATAATTAAGCAGGAAATAACAAATAAATGTTTCTTAAGGGCACAATCCCGCTTGTTTAATTCAAGGATCAATCCCTTGGCTAGGTTGAATTCTTCCTGTCCCATCTCAAGTGCATGATGCCGTACTCTCTGTTAAAGAAGTCTCCTCGACATTGCCTGCTAGGAATTTAACACATATTAACTTAATAAGATTCATAATTTCTATGGACCTTATGAATTTTCTACGTTTTTTTGGGGTCATGTAGGATGAGATGTTAGATAATCAGTCCAGTTTAGTATTTTGGATTTAATTAGTTCTTTGGTTATTTTATTGTAAGGCTATGAATACCCTCCAGGGCGCTTTTGAATATAATTTGAAATATAACTTCGTTTTTAGAGGATTTTCACTCAACTGTTGTCAAGCTAACTTGGTGTTCTTTTGTCATTGTCTTCTATGCAGAAGTTTCCGATCAAAACTTTGTGGATAATCGTCCAGGAGAGGTGTCTGGTGGCATGCCTACTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTACAACTCGGGATTGCCTTCGATTTTTTCTCTTTGGAAAACTTATAATTGCATTGTACTAAGTGTATCAGAGACCGAATTTGCTACTATTTGATCCTGCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAAAATCCAGACGCCATACTGTCTTCAGAACATCCTCAAAACTTAATGCCTCCAAATTCAGCTTTGTGTTACTTTATGAGATGGAGCTGACAACATTTCATTCCAACATGTGAAAAATGGTCTGTTCAAGCTCGCTAGCCAAATACGACATGGTTTTGTTTTCGATTCGAAAGAGCATTGTAAAGAAAATAAGGGAAATGGCGGCCATAATTCTTGACCAGAAGATGTGCAGCAAGAAGGAGAAAATA

mRNA sequence

ATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCTCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCTTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTCTCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAACCGTGTACTTCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATGGGAGACACTTAAGAAACACGAAAAACTCCTATCAATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGAAGTTTCCGATCAAAACTTTGTGGATAATCGTCCAGGAGAGGTGTCTGGTGGCATGCCTACTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAAAATCCAGACGCCATACTGTCTTCAGAACATCCTCAAAACTTAATGCCTCCAAATTCAGCTTTGTGTTACTTTATGAGATGGAGCTGACAACATTTCATTCCAACATGTGAAAAATGGTCTGTTCAAGCTCGCTAGCCAAATACGACATGGTTTTGTTTTCGATTCGAAAGAGCATTGTAAAGAAAATAAGGGAAATGGCGGCCATAATTCTTGACCAGAAGATGTGCAGCAAGAAGGAGAAAATA

Coding sequence (CDS)

ATGGGCGACCATCTTCTACATCTTCCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGTAGATCGACAACCACCCTCTCCGTCCTCTGCCAGCGACTTGACTTGTTTGAACTCCCAATCCTACTCTTCTTCCTTTACTGTTGATCGCTTCAAGGATTTTCCTTCTCATCGCTGTCTGCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATCTTGGTTCTTTAGAAGCATCTTTTGTTCAAGAGTTGCATCAATATAGACGCTTGCAAGCTTTGTCCTCAAAACAGAAAATGCGTTGCAGGCCGAGCATGCCTCATATATCTTCTTCAGAGTTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGAAAGGATAGCCGATTCTCCTGCTATTTTAGACGATGTTTGGATAAATCGTTTTCCTTCTGCAGGAAAACCGTGTACTTCGGAGACTCCTGATCTCCTTGAAGAATCTGGAAGTTTTAGTGATGGGAGACACTTAAGAAACACGAAAAACTCCTATCAATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGAGTCTTATACAATAATTACAGAAGTTTCCGATCAAAACTTTGTGGATAATCGTCCAGGAGAGGTGTCTGGTGGCATGCCTACTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTCTTCGGCCAATGACCAGGTAGTACCATATAAAAGACCATCATTAGAAAGATAA

Protein sequence

MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGRHLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASSDSSANDQVVPYKRPSLER

Homology

[Close]

BLAST of Carg26410 vs. NCBI nr
Match: XP_023529516.1 (uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.5 bits (1290), Expect = 1.7e-138
Identity = 249/258 (96.51%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQ 60
           MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSS TVDRFKDFPSHRCLQ
Sbjct: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQ 60

Query: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120
           LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL
Sbjct: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120

Query: 121 QDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGR 180
           QDASWQKANIGRNDPLLERIAD PAILDDVWINRFPSAGK CT ETPDLLEESGSFSD R
Sbjct: 121 QDASWQKANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGSFSDRR 180

Query: 181 HLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASS 240
           HLRNTKNSY+SARSSQQ+PPCCRESYTIITEVSDQNFVDN PGEVSGGMP AKRLKKASS
Sbjct: 181 HLRNTKNSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASS 240

Query: 241 DSSANDQVVPYKRPSLER 259
           DSSANDQVVPYKRPSLER
Sbjct: 241 DSSANDQVVPYKRPSLER 258

[Close]

BLAST of Carg26410 vs. NCBI nr
Match: XP_023529517.1 (uncharacterized protein LOC111792349 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 2.0e-107
Identity = 209/258 (81.01%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQ 60
           MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSS TVDRFKDFPSHRCLQ
Sbjct: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQ 60

Query: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120
           LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSE+   
Sbjct: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSEV--- 120

Query: 121 QDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGR 180
               +  +  GR                           K CT ETPDLLEESGSFSD R
Sbjct: 121 --RQYIHSKSGR---------------------------KQCTPETPDLLEESGSFSDRR 180

Query: 181 HLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASS 240
           HLRNTKNSY+SARSSQQ+PPCCRESYTIITEVSDQNFVDN PGEVSGGMP AKRLKKASS
Sbjct: 181 HLRNTKNSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRLKKASS 226

Query: 241 DSSANDQVVPYKRPSLER 259
           DSSANDQVVPYKRPSLER
Sbjct: 241 DSSANDQVVPYKRPSLER 226

[Close]

BLAST of Carg26410 vs. NCBI nr
Match: XP_022927649.1 (uncharacterized protein LOC111434473 isoform X1 [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 2.6e-107
Identity = 209/258 (81.01%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQ 60
           MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSS TVDRFKDFPSHRCLQ
Sbjct: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQ 60

Query: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120
           LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSE+   
Sbjct: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSEV--- 120

Query: 121 QDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGR 180
               +  +  GR                           K CT ETPD LEESGSFSD R
Sbjct: 121 --RQYIHSKSGR---------------------------KQCTPETPDFLEESGSFSDRR 180

Query: 181 HLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASS 240
           HLRNTKNSY+SARSSQQIPPCCRESYTIITEVSDQNFVDN PGEVSGGMPTAKRLKKAS+
Sbjct: 181 HLRNTKNSYRSARSSQQIPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPTAKRLKKAST 226

Query: 241 DSSANDQVVPYKRPSLER 259
           DSSANDQVVPYKRPSLER
Sbjct: 241 DSSANDQVVPYKRPSLER 226

[Close]

BLAST of Carg26410 vs. NCBI nr
Match: XP_022988936.1 (uncharacterized protein LOC111486142 isoform X1 [Cucurbita maxima])

HSP 1 Score: 394.0 bits (1011), Expect = 3.8e-106
Identity = 208/258 (80.62%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQ 60
           MGD LLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLN+QSYSSSFTVDRFKDFPSHRCLQ
Sbjct: 1   MGDLLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNTQSYSSSFTVDRFKDFPSHRCLQ 60

Query: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120
           LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSE+   
Sbjct: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSEV--- 120

Query: 121 QDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGR 180
               +  +  GR                           K CT ETPDL+EESGSFSD R
Sbjct: 121 --RQYIHSKSGR---------------------------KQCTLETPDLIEESGSFSDRR 180

Query: 181 HLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASS 240
           HLRNTKNSY+ ARSSQQIPPCCRESYTIITEVSDQNFVDN PGEVSGGMPTAKRLKKASS
Sbjct: 181 HLRNTKNSYRFARSSQQIPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPTAKRLKKASS 226

Query: 241 DSSANDQVVPYKRPSLER 259
           DSSANDQVVPYKRPSLER
Sbjct: 241 DSSANDQVVPYKRPSLER 226

[Close]

BLAST of Carg26410 vs. NCBI nr
Match: XP_022927650.1 (uncharacterized protein LOC111434473 isoform X2 [Cucurbita moschata])

HSP 1 Score: 391.3 bits (1004), Expect = 2.5e-105
Identity = 208/258 (80.62%), Postives = 213/258 (82.56%), Query Frame = 0


Query: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQ 60
           MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSS TVDRFKDFPSHRCLQ
Sbjct: 1   MGDHLLHLPHTPSSMSPPVVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFPSHRCLQ 60

Query: 61  LDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVL 120
           LDAV THWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSE+   
Sbjct: 61  LDAV-THWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSEV--- 120

Query: 121 QDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGR 180
               +  +  GR                           K CT ETPD LEESGSFSD R
Sbjct: 121 --RQYIHSKSGR---------------------------KQCTPETPDFLEESGSFSDRR 180

Query: 181 HLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASS 240
           HLRNTKNSY+SARSSQQIPPCCRESYTIITEVSDQNFVDN PGEVSGGMPTAKRLKKAS+
Sbjct: 181 HLRNTKNSYRSARSSQQIPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPTAKRLKKAST 225

Query: 241 DSSANDQVVPYKRPSLER 259
           DSSANDQVVPYKRPSLER
Sbjct: 241 DSSANDQVVPYKRPSLER 225

[Close]

BLAST of Carg26410 vs. TAIR10
Match: AT5G42900.1 (cold regulated gene 27)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 0


Query: 64  VQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRP---SMPHISSSELMVL 123
           ++T WT+EKH  YL S+EASFV +L  Y  L AL   + +       S    S  +  VL
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQL--YNSLGALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 124 QDASWQKANIGRNDPLL--ERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSD 183
            D  WQK N+ + +  +      +S   L   WI  +    K     T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 184 GRHLRNTKNSYQSARSSQQIPPCCRESYTII---TEVSDQNFVDNRPGEVSGGMPTAKRL 243
           G   +    S  SA S +Q+    R+   I     EVSDQNFV+     + G   ++K++
Sbjct: 164 G---KKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNE---GIKGENGSSKKM 223

Query: 244 KKA-SSDSSANDQVVPYKR 254
           K    S+SS+ DQVVP  +
Sbjct: 224 KTVMMSESSSTDQVVPLNK 234

[Close]

BLAST of Carg26410 vs. TAIR10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 21  DRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFPSHRCLQLDAVQTHWTDEKHRSYLGSL 80
           DR     S+ S      S S  S  T +  +   S    +LD   T WT+EKH SYL  L
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSR---SDADSKLDEC-TAWTNEKHNSYLDYL 74

Query: 81  EASFVQELHQYRRLQALSSKQKMRCR--PSMPHISSSELMVLQDASWQKANIGRNDPLLE 139
           E+SFV++L+    L    +++  R R   S  H S+ +  VLQ+  WQK N G+    LE
Sbjct: 75  ESSFVRQLYS---LLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQSCLE 127

[Close]

BLAST of Carg26410 vs. TrEMBL
Match: tr|A0A1S3BZU8|A0A1S3BZU8_CUCME (uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.3e-90
Identity = 182/249 (73.09%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSFTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +S P+ DRQ P P  SS +D T  NS+S+SSS TVD  K F  SH CLQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHRSYL SLEASFVQ LHQ+RR+ ALSSKQKMR +P M   SSSELMVLQDASWQ
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 130 KANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGRHLRNTK 189
           KANIGRNDPLL++ ADSPAIL+D+WIN FPSAGK C+ ETPDLLEE GS SD RH+R+  
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 190 NSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASSDSSAND 249
           NS  SAR+SQQ  PCC  SYTIITEVSDQNFVDN+PGE+SGGMPTAKRLKKASS    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 253

[Close]

BLAST of Carg26410 vs. TrEMBL
Match: tr|A0A0A0K7Z2|A0A0A0K7Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 153/249 (61.45%), Postives = 176/249 (70.68%), Query Frame = 0


Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSFTVDRFKD-FPSHRCLQLDAVQT 69
           HTPS +SPP+ DRQ P P  S+ +D T  NS+S+SSS T+D  K  F             
Sbjct: 5   HTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFXXXXXXXXXXXXX 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
                          ASFVQ+LHQ+R + ALS KQKMR +P  P ISSSELMVLQDASWQ
Sbjct: 65  XXXXXXXXXXXXXXXASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQDASWQ 124

Query: 130 KANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGRHLRNTK 189
           KANIGRNDPLL++ ADSPAIL+D+WIN FPSAGK C+ ETPDLLEE  S SD RH+R   
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHIRYMT 184

Query: 190 NSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASSDSSAND 249
           NS +SAR+SQ   PCC  SYTIITEVSDQNFVDN+PGE+S GMP AKRLKKASSD S + 
Sbjct: 185 NSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSA 244

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 253

[Close]

BLAST of Carg26410 vs. TrEMBL
Match: tr|A0A1S3BZQ8|A0A1S3BZQ8_CUCME (uncharacterized protein LOC103495241 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.2e-61
Identity = 147/249 (59.04%), Postives = 166/249 (66.67%), Query Frame = 0


Query: 10  HTPSSMSPPVVDRQPPSP--SSASDLTCLNSQSYSSSFTVDRFKDF-PSHRCLQLDAVQT 69
           HTPS +S P+ DRQ P P  SS +D T  NS+S+SSS TVD  K F  SH CLQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 70  HWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSSELMVLQDASWQ 129
           HWTDEKHRSYL SLEASFVQ LHQ+RR+ ALSSKQKMR +P M   SSSE+         
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSEV--------- 124

Query: 130 KANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGRHLRNTK 189
           + +I +                        S  K C+ ETPDLLEE GS SD RH+R+  
Sbjct: 125 RQHIHKK-----------------------SGRKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 190 NSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASSDSSAND 249
           NS  SAR+SQQ  PCC  SYTIITEVSDQNFVDN+PGE+SGGMPTAKRLKKASS    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 221

Query: 250 QVVPYKRPS 256
           QVVP+KR S
Sbjct: 245 QVVPFKRLS 221

[Close]

BLAST of Carg26410 vs. TrEMBL
Match: tr|A0A2N9IFZ1|A0A2N9IFZ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50892 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 91/205 (44.39%), Postives = 119/205 (58.05%), Query Frame = 0


Query: 59  LQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSM--PHI---- 118
           L +  + T WTDEKHR YL SLEASFV ELH+  RL+ L S+       S   P +    
Sbjct: 62  LMVPHLLTEWTDEKHRLYLDSLEASFVTELHRSMRLRGLRSQDNTSRLYSSKEPQVKTQN 121

Query: 119 SSSELMVLQDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEE 178
           SS + +VL+D  WQK N GR DP  +  ADS  +L   WI RF S+GK  T  +PD+ E 
Sbjct: 122 SSDQFIVLRDVCWQKINFGRIDPFSDSTADSHVVLRTPWIRRFTSSGKQRTVRSPDVREH 181

Query: 179 SGSFSDGRHLR-NTKNSYQSARSSQQIPPC---CRESYTIITEVSDQNFVDNRPGEVSGG 238
               ++G HL+ N  +S+ S+R   Q   C    ++S   ITEVSDQNF D   GE S  
Sbjct: 182 DMVCNEGAHLKDNLTSSFGSSRGFGQYSVCRLRHQDSVGSITEVSDQNFEDEDQGEKSSC 241

Query: 239 MPTAKRLKKASSDSSANDQVVPYKR 254
              AKRLK A+++ S+NDQVVP ++
Sbjct: 242 ASMAKRLKTATAEGSSNDQVVPVEK 266

[Close]

BLAST of Carg26410 vs. TrEMBL
Match: tr|A0A2P4J8J3|A0A2P4J8J3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_72825 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 97/233 (41.63%), Postives = 119/233 (51.07%), Query Frame = 0


Query: 31  SDLTCLNSQSYSSSFTVDRF---KDFPSHRCLQLDAVQTHWTDEKHRSYLGSLEASFVQE 90
           ++LTC NS   SS+ TVD     +  P  +        T WTDEKH SYL SLEASFV E
Sbjct: 20  AELTCTNSD--SSAITVDAVASTRPSPHSQIPPPKGQLTEWTDEKHSSYLDSLEASFVTE 79

Query: 91  LHQYRRLQALSSKQKM-RCRPS-----MPHISSSELMVLQDASWQKANIGRNDPLLERIA 150
           LH+   L+ L SK  M R   S         SS +  VL+D  WQK N  RND   +  A
Sbjct: 80  LHRSMHLRGLRSKDNMWRASSSEKPQAKTRNSSDQFFVLRDGCWQKINFERNDTFSDSSA 139

Query: 151 DSPAILDDVWINRFPSAGKPCTSETPDLLEESGSFSDGRHLR-NTKNSYQSARSSQQ--- 210
           DS  +L   WI RF S+ K  T  +PD        +    L+ N  +S  S R  +Q   
Sbjct: 140 DSHVVLGTPWIRRFTSSSKQRTVRSPDARGHGMVCNKAVLLKENFTSSCGSLRGLEQHSV 199

Query: 211 IPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRLKKASSDSSANDQVVP 251
             PC ++    ITEVSDQNF D   GE+S      KRLK AS D++ NDQVVP
Sbjct: 200 CLPCHQDLVGNITEVSDQNFEDEDQGEMSSSASMVKRLKTASVDATNNDQVVP 250

The following BLAST results are available for this feature:

BLAST of Carg26410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529516.1	1.7e-138	96.51	uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023529517.1	2.0e-107	81.01	uncharacterized protein LOC111792349 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022927649.1	2.6e-107	81.01	uncharacterized protein LOC111434473 isoform X1 [Cucurbita moschata]	[more]
XP_022988936.1	3.8e-106	80.62	uncharacterized protein LOC111486142 isoform X1 [Cucurbita maxima]	[more]
XP_022927650.1	2.5e-105	80.62	uncharacterized protein LOC111434473 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg26410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42900.1	1.2e-10	31.66	cold regulated gene 27	[more]
AT4G33980.2	1.1e-06	35.00	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg26410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZU8\|A0A1S3BZU8_CUCME	3.3e-90	73.09	uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K7Z2\|A0A0A0K7Z2_CUCSA	2.9e-70	61.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1	[more]
tr\|A0A1S3BZQ8\|A0A1S3BZQ8_CUCME	4.2e-61	59.04	uncharacterized protein LOC103495241 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9IFZ1\|A0A2N9IFZ1_FAGSY	1.6e-31	44.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50892 PE=4 SV=1	[more]
tr\|A0A2P4J8J3\|A0A2P4J8J3_QUESU	1.0e-27	41.63	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_72825 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26410-RA	Carg26410-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..258
None	No IPR available	PANTHER	PTHR33676:SF4	SUBFAMILY NOT NAMED	coord: 30..253
None	No IPR available	PANTHER	PTHR33676	FAMILY NOT NAMED	coord: 30..253

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26410	Cla016015	Watermelon (97103) v1	carwmB0799
Carg26410	Csa7G073620	Cucumber (Chinese Long) v2	carcuB0817
Carg26410	MELO3C018454	Melon (DHL92) v3.5.1	carmeB0798
Carg26410	ClCG02G005970	Watermelon (Charleston Gray)	carwcgB0774
Carg26410	CSPI07G07590	Wild cucumber (PI 183967)	carcpiB0837
Carg26410	Cucsa.219820	Cucumber (Gy14) v1	carcgyB0914
Carg26410	CmaCh19G006010	Cucurbita maxima (Rimu)	carcmaB1114
Carg26410	CmaCh11G017470	Cucurbita maxima (Rimu)	carcmaB1113
Carg26410	CmoCh19G006190	Cucurbita moschata (Rifu)	carcmoB1086
Carg26410	CmoCh11G013660	Cucurbita moschata (Rifu)	carcmoB1085
Carg26410	Lsi03G004970	Bottle gourd (USVL1VR-Ls)	carlsiB736
Carg26410	Cp4.1LG15g04790	Cucurbita pepo (Zucchini)	carcpeB1125
Carg26410	Cp4.1LG04g08000	Cucurbita pepo (Zucchini)	carcpeB1126
Carg26410	CsGy7G007160	Cucumber (Gy14) v2	carcgybB0791
Carg26410	MELO3C018454.2	Melon (DHL92) v3.6.1	carmedB0810
Carg26410	CsaV3_7G008550	Cucumber (Chinese Long) v3	carcucB0841
Carg26410	Cla97C02G032940	Watermelon (97103) v2	carwmbB0838
Carg26410	Bhi05G000923	Wax gourd	carwgoB0937

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26410	Carg22070	Silver-seed gourd	carcarB246

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26410	Bottle gourd (USVL1VR-Ls)	carlsiB737
Carg26410	Watermelon (Charleston Gray)	carwcgB0775