CmoCh19G006190 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G006190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCold regulated gene 27, putative isoform 2
LocationCmo_Chr19 : 6793342 .. 6796662 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCATTTTTTCTTTGATTTGATTTTCTATATTTGGCTGTTCCGAACGATTTCGCTTTGTCTTTGATCTCCCGGAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTAAATTGTGACTCTATCTCTTTTGTTTTTGCTGTTTCTTGGAAGTATGATTTTGAGTTTTTCCTTGGTATGAACGAGTTTTTTGCGGACTGTGCTTTGTTTTTCTGCTTTGAACGTAGCGCCTGGAGTTCGTGTGACCTAGTTTTTGTGCTCTCGAAACTAATATCCTTGGTTACGAGTGATTCTTTTTCTCTTGGTGGTGTCTTTAGAAATTTTTAATGGTAGAGTGGTTTTGGGCACCTCCCATTTGAATGTTTAGTGTTAGGGCATATTCAAGTTAAATCGTGGATGAATTTCGAGTTAAGTCTTTGTGATTCAATTTTGTTTTTTTGTTTTTAAAAGAAAACATTTTACTCTTTGAATTCCCCTTGTTTTAGTTGTTATTTTCTCTTGTAGGACACTCATTTTATTTGTATCAAATGTTTTAGCTCTAAGTTTTAACTCATATTAAGGAACAATTTGAAAATTTCACGTGAAACATGAGGAATGGTTTTACTAATTGTTTTACTAATTGGAAATTTCAGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCTATATCATTCCTCTACGTCCTTAATGATTTCCTCTTGTTTTATTTCTTTTCTTAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGGTACCCGAACACATTGTTCATGTTTTCCAAACCCTTTTCCAGAGTCTCACTTTTCGTTGATTCTACCGTCTAATATACTTAAAATTTGTAATCTATTCCCTTATTATGCATGTACACTATTGATGATGATCGGCCATATGCTTCATACTTTGTTGTTGTGATCTTCCAATCATATTTCGTAATGTTGAAGGTGTTTGCAATAATTATACTAGTAGTAGTATTGACTTAAGCACCATTTAGATGCACTATTTTTCTGATTTAAGTTTGTGTTGGTTTACCAATATGACCATTACTTTGTGATGTTACCATTAGTTGCCACATTGACTGCACCACTTGAAGTCCTGCAAACGTTTTTGCTTGAATTTTGTGTTCATCAAATGTGTTTCCTATGAGAGGGTTTCTGAAATACGACTTAGTGCATCCGAGTTGTAAAATTTGTACGTCAAGCTTAGGATATTATGTTATCTTCCTAGCAATAGAAAATCTATATGTTCTTAATCGGATAGTTTCAATTTGGTTTTCAGTGTTTTGGTAACTTTGTTCCCTTAGCTTGATTTATAGTGTTTACACCTGGGTCACAAGATTTAACGTCACAGTTCTTCATTCTATGTTACAATTAAGAACTCACGGGCAAACTGATTGCGTATCTTATCAATTTGAAGTTGTTTGATGTATATTTATGCTTGAAGAAGTAGAAGTCCTTTATGTAAAGTTGGATGAACATTGTTGTACGGGAAAAAAAAAGAGAATAAAACCGAGTAGAAATTACTAGGATGGACAGCATTCTGATTATTGATGAACCTCTAGATGAAGCCAGGCTAATGTAGACTAATTCTAGGACAGTAGCTGTTTAGGGATGAATCAAAGCAGAAATTCTTGGGTTCATAACATTTCAGTCAAATTAGAGCATCCATGTTAAGGAATTTGCCTTCTTTTATGAATGTTTAATGCTTGATGTGATTTTTCTGTTTTCATACTAACTTAGTGTCTATTATCTCTTCATTGCAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAAGACCGAATATGCTGCTATTTCATCTCTTAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACAGTGCAAGAGGGAGCTGACAACAACTCATTCCAACATGTGAAGACACCCGGCTGTTCAAGTTCGTTATCCGAACGCAACACGATTCTGTTTTCCTTCCGAAAGAGCATCGAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTAGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGATATAGATATACACACCCTTTTACATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGGTGGAGCCTTTCTTTTGCTTATGGAGTATGTTGATGGCTAAGTGCTTTCTTGACTAATTGCGTTGTTCGAATGGTTATCAAACGGGACTTAAGCTATTATATCTTTGCTTGCTTTGTTACGATC

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCATTTTTTCTTTGATTTGATTTTCTATATTTGGCTGTTCCGAACGATTTCGCTTTGTCTTTGATCTCCCGGAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAAGACCGAATATGCTGCTATTTCATCTCTTAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACAGTGCAAGAGGGAGCTGACAACAACTCATTCCAACATGTGAAGACACCCGGCTGTTCAAGTTCGTTATCCGAACGCAACACGATTCTGTTTTCCTTCCGAAAGAGCATCGAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTAGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGATATAGATATACACACCCTTTTACATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGGTGGAGCCTTTCTTTTGCTTATGGAGTATGTTGATGGCTAAGTGCTTTCTTGACTAATTGCGTTGTTCGAATGGTTATCAAACGGGACTTAAGCTATTATATCTTTGCTTGCTTTGTTACGATC

Coding sequence (CDS)

ATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAA
BLAST of CmoCh19G006190 vs. TrEMBL
Match: A0A0A0K7Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073620 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.4e-90
Identity = 177/249 (71.08%), Postives = 205/249 (82.33%), Query Frame = 1

Query: 1   MVDAHTPSSMSPPVADRESPMSVSAS--DLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60
           M D+HTPS +SPP+ADR+SPM ++++  D T  NSES+SSS T+D S+       SHHC 
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKH---FFDSHHCS 60

Query: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMV 120
           QLDA QTHWT+EKHRL+LDSLEASFVQDLH++R + ALS KQKMRRKPI P+ISSSE MV
Sbjct: 61  QLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMV 120

Query: 121 LQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDR 180
           LQDASWQKAN+GR DPLLDKTADSPAILED+WINHFPSAG QC+LET D+LEEC SCSDR
Sbjct: 121 LQDASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDR 180

Query: 181 SHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKAS 240
            HIR  TNS +SAR+SQ   PCC +S+TI+TEVSDQNFVD  PGELS G PI KRLKKAS
Sbjct: 181 RHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKAS 240

Query: 241 SDSSGNNRV 248
           SD S + +V
Sbjct: 241 SDFSDSAQV 246

BLAST of CmoCh19G006190 vs. TrEMBL
Match: W9SMJ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027523 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 89/244 (36.48%), Postives = 124/244 (50.82%), Query Frame = 1

Query: 12  PPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQ-----LDAVQTH 71
           P  AD   P    AS+LTR +S++  S+ T+D S+     +P     Q     L    T 
Sbjct: 2   PSSADPARPPDSFASELTRTDSDA--SAITLDFSKD--AWLPCDEAMQVGILALQGKSTE 61

Query: 72  WTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQDASWQK 131
           WT+EKH ++LD LEASFV DL+   HL  L  K+  RR       +S + +V +D   +K
Sbjct: 62  WTDEKHSMYLDYLEASFVDDLYHSMHLGGLGVKKNSRRP-----YTSDKFVVREDRGRKK 121

Query: 132 ANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHIRNKTN 191
            N  R +PL D TADS  ++E   I+HF   G  C++   D  E      ++ H   K  
Sbjct: 122 INDERNEPLFDSTADSHVVMERPLIHHFKYPGKGCSVACLDSQEHVVLRENKMHSNGKLA 181

Query: 192 S-RQSARSSQQIP---PCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSDSS 247
              +SARS +Q P    C  D      E SDQNFV+ +PG       ++KRLK A+SD S
Sbjct: 182 CLYESARSLEQKPVDRKCHWDIVGSAAEFSDQNFVEDNPGGNPSRKSMSKRLKMAASDGS 236

BLAST of CmoCh19G006190 vs. TrEMBL
Match: B9RYH7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813320 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 80/192 (41.67%), Postives = 98/192 (51.04%), Query Frame = 1

Query: 65  THWTEEKHRLFLDSLEASFVQDLHRYRHLRA-----LSSKQKMRRKPIMPNISSSESMVL 124
           T WT+EKH L++DSLEA+FV  LH    LR      L      R  P     SS + MVL
Sbjct: 60  TVWTDEKHSLYIDSLEAAFVNQLHHSIALRGSLQEILLGPYSSRALPKNSRNSSHKLMVL 119

Query: 125 QDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRS 184
           +D SWQ  N  R  PLL+ TADS  I E    +HF SAG +  +   D L   G CS+R 
Sbjct: 120 RDGSWQNINSRRNKPLLESTADSHYIQEIPCTSHFSSAGKRRIVACHD-LHHGGLCSERI 179

Query: 185 HIR-NKTNSRQSARSSQQIPPCCR---DSHTIVTEVSDQNFVDTHPGELSDGTPITKRLK 244
           H   N   S   ARSS Q   C     +S  I  EVSDQNFVD   GE S      K+LK
Sbjct: 180 HAAGNSPVSCGLARSSGQHSACSLCYCNSDGIALEVSDQNFVDDDGGEKSSCMATVKKLK 239

Query: 245 KASSDSSGNNRV 248
              +D+S  +++
Sbjct: 240 IVGTDASSYDKI 250

BLAST of CmoCh19G006190 vs. TrEMBL
Match: A5AWZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001771 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.7e-20
Identity = 89/244 (36.48%), Postives = 116/244 (47.54%), Query Frame = 1

Query: 12  PPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEK 71
           PP A   +      S +TR +S+   S++TVD S+  L         Q     T WT+EK
Sbjct: 10  PPPASDLAGTEGCGSAVTRGSSDL--SASTVDGSKACLRSNGDARSGQT----TEWTDEK 69

Query: 72  HRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNI------SSSESMVLQDASWQ 131
           H L+LDSLE+SFV  LH    L    SK KM        +      SS E  VLQD  W+
Sbjct: 70  HSLYLDSLESSFVNQLHSSMGLFGRRSKVKMMELNSFQELAVNAYNSSDEYTVLQDGCWR 129

Query: 132 KANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHIRNKT 191
           K N GR   L D  A+S  ILE+ WI HF SAG Q  + ++D+       S   H+R K 
Sbjct: 130 KRNFGRHQLLSDAAAESRDILENPWICHFKSAGQQHDVTSSDLWNRSVDSSKGIHLRGKR 189

Query: 192 N-SRQSARSSQQIPPC---CRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSDS 246
             S   A SS+++  C    +DS   +TEVSDQNF+D      S      K+LK  +   
Sbjct: 190 KASHGLATSSKRLSACHPWLQDSVGGITEVSDQNFIDEDQENKSSRVSRAKKLKTKADTV 247

BLAST of CmoCh19G006190 vs. TrEMBL
Match: A0A0D2R7Q9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G024800 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 79/229 (34.50%), Postives = 111/229 (48.47%), Query Frame = 1

Query: 27  DLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQD 86
           +LT+ N +   S  T+++     P+       QL      WT EKH  +LDSLEASFV+ 
Sbjct: 24  ELTQTNLDFSDSGVTIESFRDPAPIA------QLGQTMV-WTNEKHNTYLDSLEASFVKQ 83

Query: 87  LHRYRHLRALSSKQKMRRKPIMPNI-----SSSESMVLQDASWQKANVGRTDPLLDKTAD 146
           LH  + L     +  MR   + P +     SS +  +LQD   QK N    DPLL+ TAD
Sbjct: 84  LHYSKSLHGCHPQVGMREPCLFPQLLVGHNSSHQFSILQDGCGQKINYESNDPLLESTAD 143

Query: 147 SPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHIRNKTN----SRQSARSSQQI 206
           S A+L   W++HF SAG +C+  T  V  +    +D    R+ TN    S  +++ +  +
Sbjct: 144 SGAVLGSPWLHHFRSAG-KCSSITFPVPRKIAVPNDEICSRSNTNFYCKSAVNSKLNPIV 203

Query: 207 PPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLK-----KASSDS 242
             C     +   EVSDQNFV    GE +      KR+K      ASSDS
Sbjct: 204 NSCNHSLDSCTAEVSDQNFVAEDHGEKTSYASGAKRMKMMTVLDASSDS 244

BLAST of CmoCh19G006190 vs. TAIR10
Match: AT5G42900.1 (AT5G42900.1 cold regulated gene 27)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 65/203 (32.02%), Postives = 91/203 (44.83%), Query Frame = 1

Query: 30  RLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHR 89
           R + +S  SS+   + EG+     S +    + ++T WT EKH L+L S+EASFV  L  
Sbjct: 13  RFSDDSDDSSDDASSVEGETT--SSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQL-- 72

Query: 90  YRHLRALSSKQKMR--------RKPIMPNISSSESMVLQDASWQKANVGRTDPLLD--KT 149
           Y  L AL   + +         RKP     S  +  VL D  WQK NV + +  ++    
Sbjct: 73  YNSLGALGKNENVSESTRFGSGRKP-----SQEQFKVLHDGFWQKINVKQPEHRINGRHG 132

Query: 150 ADSPAILEDVWINHF-PSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIP 209
            +S   L   WI H+ P    Q  +  TD  E        S+ +    S  SA S +Q+ 
Sbjct: 133 GNSHEFLRSPWIKHYKPLVKTQ--IPVTD--EPENQVVSSSNGKKGICSSGSASSLKQLS 192

Query: 210 PCCRDSHTI---VTEVSDQNFVD 219
              RD   I     EVSDQNFV+
Sbjct: 193 SHSRDHDQISVGEAEVSDQNFVN 202

BLAST of CmoCh19G006190 vs. NCBI nr
Match: gi|449438404|ref|XP_004136978.1| (PREDICTED: uncharacterized protein LOC101204925 isoform X1 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 2.0e-90
Identity = 177/249 (71.08%), Postives = 205/249 (82.33%), Query Frame = 1

Query: 1   MVDAHTPSSMSPPVADRESPMSVSAS--DLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60
           M D+HTPS +SPP+ADR+SPM ++++  D T  NSES+SSS T+D S+       SHHC 
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKH---FFDSHHCS 60

Query: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMV 120
           QLDA QTHWT+EKHRL+LDSLEASFVQDLH++R + ALS KQKMRRKPI P+ISSSE MV
Sbjct: 61  QLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMV 120

Query: 121 LQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDR 180
           LQDASWQKAN+GR DPLLDKTADSPAILED+WINHFPSAG QC+LET D+LEEC SCSDR
Sbjct: 121 LQDASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDR 180

Query: 181 SHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKAS 240
            HIR  TNS +SAR+SQ   PCC +S+TI+TEVSDQNFVD  PGELS G PI KRLKKAS
Sbjct: 181 RHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKAS 240

Query: 241 SDSSGNNRV 248
           SD S + +V
Sbjct: 241 SDFSDSAQV 246

BLAST of CmoCh19G006190 vs. NCBI nr
Match: gi|659109923|ref|XP_008454952.1| (PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 1.4e-88
Identity = 176/249 (70.68%), Postives = 201/249 (80.72%), Query Frame = 1

Query: 1   MVDAHTPSSMSPPVADRESPM--SVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60
           M D+HTPS +S P+ADR+SPM  + S +D T  NSES+SSS TVD S+     + SHHC 
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKR---FLDSHHCL 60

Query: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMV 120
           QLDA QTHWT+EKHR +LDSLEASFVQ LH++R + ALSSKQKMRRKPIM + SSSE MV
Sbjct: 61  QLDAEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMV 120

Query: 121 LQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDR 180
           LQDASWQKAN+GR DPLLDKTADSPAILED+WINHFPSAG QC+LET D+LEECGSCSDR
Sbjct: 121 LQDASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDR 180

Query: 181 SHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKAS 240
            HIR+ TNS  SAR+SQQ  PCC +S+TI+TEVSDQNFVD  PGELS G P  KRLKKAS
Sbjct: 181 RHIRHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKAS 240

Query: 241 SDSSGNNRV 248
           S    N +V
Sbjct: 241 SGFLDNAQV 246

BLAST of CmoCh19G006190 vs. NCBI nr
Match: gi|778725103|ref|XP_011658902.1| (PREDICTED: uncharacterized protein LOC101204925 isoform X2 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.6e-60
Identity = 142/249 (57.03%), Postives = 168/249 (67.47%), Query Frame = 1

Query: 1   MVDAHTPSSMSPPVADRESPMSVSAS--DLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60
           M D+HTPS +SPP+ADR+SPM ++++  D T  NSES+SSS T+D S+       SHHC 
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKH---FFDSHHCS 60

Query: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMV 120
           QLDA QTHWT+EKHRL+LDSLEASFVQDLH++R + ALS KQKMRRKPI P+ISSSE  V
Sbjct: 61  QLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSE--V 120

Query: 121 LQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDR 180
            Q                                H  S   QC+LET D+LEEC SCSDR
Sbjct: 121 RQHI------------------------------HKKSGRKQCSLETPDLLEECESCSDR 180

Query: 181 SHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKAS 240
            HIR  TNS +SAR+SQ   PCC +S+TI+TEVSDQNFVD  PGELS G PI KRLKKAS
Sbjct: 181 RHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKAS 214

Query: 241 SDSSGNNRV 248
           SD S + +V
Sbjct: 241 SDFSDSAQV 214

BLAST of CmoCh19G006190 vs. NCBI nr
Match: gi|659109926|ref|XP_008454953.1| (PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 141/249 (56.63%), Postives = 164/249 (65.86%), Query Frame = 1

Query: 1   MVDAHTPSSMSPPVADRESPM--SVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60
           M D+HTPS +S P+ADR+SPM  + S +D T  NSES+SSS TVD S+     + SHHC 
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKR---FLDSHHCL 60

Query: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMV 120
           QLDA QTHWT+EKHR +LDSLEASFVQ LH++R + ALSSKQKMRRKPIM + SSSE  V
Sbjct: 61  QLDAEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSE--V 120

Query: 121 LQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDR 180
            Q                                H  S   QC+LET D+LEECGSCSDR
Sbjct: 121 RQHI------------------------------HKKSGRKQCSLETPDLLEECGSCSDR 180

Query: 181 SHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKAS 240
            HIR+ TNS  SAR+SQQ  PCC +S+TI+TEVSDQNFVD  PGELS G P  KRLKKAS
Sbjct: 181 RHIRHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKAS 214

Query: 241 SDSSGNNRV 248
           S    N +V
Sbjct: 241 SGFLDNAQV 214

BLAST of CmoCh19G006190 vs. NCBI nr
Match: gi|1009150236|ref|XP_015892911.1| (PREDICTED: uncharacterized protein LOC107427085 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 95/250 (38.00%), Postives = 126/250 (50.40%), Query Frame = 1

Query: 11  SPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQ---THW 70
           +P   D E+      S LT  NS +  S+ +VD S+ D  L    HC     +Q   T W
Sbjct: 11  APTSTDHEATEEGGQSKLTSANSNA--SAISVDNSK-DFSL----HCATATMLQGQSTEW 70

Query: 71  TEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKM------RRKPIMPNISSSESMVLQD 130
           T+E+H L+LDSLEASFV DL+R  +L     +         R  P   N S  + M  +D
Sbjct: 71  TDERHSLYLDSLEASFVNDLYRSIYLGGSCLQNNFLGTYSSRAFPDKTNNSGQQFMAPRD 130

Query: 131 ASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHI 190
             W K N  R   +L+   D   +    WI+HF S+G +  +E  D LEE  S ++R HI
Sbjct: 131 GCWTKINYERNGTILNTAVDCHGMTGSPWIHHFTSSGKRQYVEFPD-LEEHTSDNERIHI 190

Query: 191 RNK-TNSRQSARSSQQIPPCCR---DSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKA 248
           R K T+    ARSS   P C +   DS   +TEVSDQNFVD   G  S   P  KR K A
Sbjct: 191 RGKLTDFNGRARSSNHKPVCDKCEEDSVGNITEVSDQNFVDEDHGAKSSRKPTAKRPKAA 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7Z2_CUCSA1.4e-9071.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073620 PE=4 SV=1[more]
W9SMJ9_9ROSA1.2e-2236.48Uncharacterized protein OS=Morus notabilis GN=L484_027523 PE=4 SV=1[more]
B9RYH7_RICCO4.4e-2041.67Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813320 PE=4 SV=1[more]
A5AWZ9_VITVI5.7e-2036.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001771 PE=4 SV=1[more]
A0A0D2R7Q9_GOSRA2.4e-1834.50Uncharacterized protein OS=Gossypium raimondii GN=B456_008G024800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G42900.11.1e-0932.02 cold regulated gene 27[more]
Match NameE-valueIdentityDescription
gi|449438404|ref|XP_004136978.1|2.0e-9071.08PREDICTED: uncharacterized protein LOC101204925 isoform X1 [Cucumis sativus][more]
gi|659109923|ref|XP_008454952.1|1.4e-8870.68PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo][more]
gi|778725103|ref|XP_011658902.1|1.6e-6057.03PREDICTED: uncharacterized protein LOC101204925 isoform X2 [Cucumis sativus][more]
gi|659109926|ref|XP_008454953.1|1.2e-5856.63PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo][more]
gi|1009150236|ref|XP_015892911.1|7.9e-2338.00PREDICTED: uncharacterized protein LOC107427085 isoform X1 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G006190.1CmoCh19G006190.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33676FAMILY NOT NAMEDcoord: 60..247
score: 1.7
NoneNo IPR availablePANTHERPTHR33676:SF3COLD REGULATED PROTEIN 27coord: 60..247
score: 1.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G006190CmoCh11G013660Cucurbita moschata (Rifu)cmocmoB110
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G006190Wax gourdcmowgoB0640
CmoCh19G006190Cucurbita moschata (Rifu)cmocmoB276
CmoCh19G006190Cucurbita moschata (Rifu)cmocmoB352
CmoCh19G006190Cucurbita moschata (Rifu)cmocmoB395
CmoCh19G006190Cucurbita moschata (Rifu)cmocmoB398
CmoCh19G006190Cucumber (Gy14) v1cgycmoB0686
CmoCh19G006190Cucurbita maxima (Rimu)cmacmoB718
CmoCh19G006190Cucurbita maxima (Rimu)cmacmoB329
CmoCh19G006190Cucurbita maxima (Rimu)cmacmoB853
CmoCh19G006190Wild cucumber (PI 183967)cmocpiB510
CmoCh19G006190Cucumber (Chinese Long) v2cmocuB504
CmoCh19G006190Melon (DHL92) v3.5.1cmomeB473
CmoCh19G006190Melon (DHL92) v3.5.1cmomeB477
CmoCh19G006190Watermelon (Charleston Gray)cmowcgB464
CmoCh19G006190Watermelon (97103) v1cmowmB490
CmoCh19G006190Cucurbita pepo (Zucchini)cmocpeB489
CmoCh19G006190Cucurbita pepo (Zucchini)cmocpeB490
CmoCh19G006190Bottle gourd (USVL1VR-Ls)cmolsiB460
CmoCh19G006190Bottle gourd (USVL1VR-Ls)cmolsiB478
CmoCh19G006190Bottle gourd (USVL1VR-Ls)cmolsiB482
CmoCh19G006190Cucumber (Gy14) v2cgybcmoB352
CmoCh19G006190Melon (DHL92) v3.6.1cmomedB526
CmoCh19G006190Melon (DHL92) v3.6.1cmomedB547
CmoCh19G006190Melon (DHL92) v3.6.1cmomedB549
CmoCh19G006190Melon (DHL92) v3.6.1cmomedB553
CmoCh19G006190Silver-seed gourdcarcmoB0512
CmoCh19G006190Silver-seed gourdcarcmoB1089
CmoCh19G006190Cucumber (Chinese Long) v3cmocucB0602
CmoCh19G006190Cucumber (Chinese Long) v3cmocucB0611
CmoCh19G006190Watermelon (97103) v2cmowmbB502
CmoCh19G006190Watermelon (97103) v2cmowmbB516
CmoCh19G006190Watermelon (97103) v2cmowmbB527