Cp4.1LG04g07580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g07580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG04 : 4067907 .. 4068269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

mRNA sequence

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

Coding sequence (CDS)

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

Protein sequence

MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSVENF

Homology

[Close]

BLAST of Cp4.1LG04g07580 vs. TrEMBL
Match: A0A0A0K6B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 81/145 (55.86%), Postives = 93/145 (64.14%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSM-FTPRI------------------QNEELDL 60
           MDH HNLFVSS+GSVESGWTVYLE+SSS  F+ RI                  ++EE+DL
Sbjct: 1   MDHGHNLFVSSDGSVESGWTVYLENSSSSYFSRRIDDSNFDAHKDFYNDDDDDEDEEVDL 60

Query: 61  SMLSDASSGPPIFRE--NEPV--FPENESGR--CFCDTTA-TLFPKGSRKMKGGDGRRRP 120
           SM+SDASSGP  F E  NE +  FP+N       FC  TA     K  RKMKG   RRR 
Sbjct: 61  SMVSDASSGPQTFPEHNNEELVNFPQNYENPPPYFCAKTAGRSLLKTGRKMKGSGERRRQ 120

[Close]

BLAST of Cp4.1LG04g07580 vs. TrEMBL
Match: D7SXN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g01090 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 51/119 (42.86%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 16  ESGWTVYLEDSSSMFTP------------------RIQNEELDLSMLSDASSGPPIFREN 75
           ESGWT+YLE S     P                    + EE DLSM+SDASSGPP F+E+
Sbjct: 13  ESGWTLYLEHSFLSADPLHRGSGFVDGEVKRGKDEAEEEEEEDLSMVSDASSGPPHFQED 72

Query: 76  EPVFPENESGRCFC--DTTATLFPKGSRKMKGGDGRRRPEQ-TASFLDDTASSDPNFNF 114
           E     N+   CF      ATL     ++ K    R R EQ   SFLDDTASS P FNF
Sbjct: 73  EGYC--NDDNGCFYPHSMAATLVKNNGKRQKIRTHRGRVEQEDPSFLDDTASS-PLFNF 128

[Close]

BLAST of Cp4.1LG04g07580 vs. TrEMBL
Match: A5C0N4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024777 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 51/119 (42.86%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 16  ESGWTVYLEDSSSMFTP------------------RIQNEELDLSMLSDASSGPPIFREN 75
           ESGWT+YLE S     P                    + EE DLSM+SDASSGPP F+E+
Sbjct: 13  ESGWTLYLEHSFLSADPLHRGSGFVDGEVKRGKDEAEEEEEEDLSMVSDASSGPPHFQED 72

Query: 76  EPVFPENESGRCFC--DTTATLFPKGSRKMKGGDGRRRPEQ-TASFLDDTASSDPNFNF 114
           E     N+   CF      ATL     ++ K    R R EQ   SFLDDTASS P FNF
Sbjct: 73  EGYC--NDDNGCFYPHSMAATLVKNNGKRQKIRTHRGRVEQEDPSFLDDTASS-PLFNF 128

[Close]

BLAST of Cp4.1LG04g07580 vs. TrEMBL
Match: A0A166GLG6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001741 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 1


Query: 16  ESGWTVYLEDSSSMFTP--------------RIQNEELDLSMLSDASSGPPIFRENEPVF 75
           ESGWT+YL+   S  +P                  +E D+SMLSDASSGPP FR+ E   
Sbjct: 14  ESGWTLYLDHEDSFLSPFPSRKSGDDSVKQDEDDYDEEDMSMLSDASSGPPHFRDEEYYG 73

Query: 76  PENESGRCFCDT-TATLFPKGSRKMKGGDGRRR---PEQTASFLDDTASS 108
            +  +   F  T +    PK + K K    +RR    EQ  SFLDDTASS
Sbjct: 74  NDLSNNGFFVQTHSDAALPKNNGKRKKNSEKRRQRVQEQQLSFLDDTASS 123

[Close]

BLAST of Cp4.1LG04g07580 vs. TrEMBL
Match: A0A0D2URV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 50/113 (44.25%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 6   NLFVSSNGS-VESGWTVYLEDSS------SMFTP--RIQNEELDLSMLSDASSGPPIF-R 65
           N+  S  GS  ESGWT+YL+ SS        F+   R+++EE DLSM+SDASSGP  + +
Sbjct: 2   NMSASQCGSGCESGWTLYLDQSSYSQKRCQKFSRSFRVEDEEQDLSMVSDASSGPRHYCQ 61

Query: 66  ENEPVFPENESGRCFCDTTATLFP-KGSRKMKGGDGRRRPEQTASFLDDTASS 108
           + E    EN    CFC T A   P K S K K         Q  S+LDDTASS
Sbjct: 62  DYEECLDEN---GCFCSTPAPPEPAKKSSKNKKKIKEHGSNQQHSYLDDTASS 111

[Close]

BLAST of Cp4.1LG04g07580 vs. TAIR10
Match: AT4G33800.1 (AT4G33800.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 44/136 (32.35%), Postives = 58/136 (42.65%), Query Frame = 1


Query: 9   VSSNGSVESGWTVYLEDSSSMFTP--------------------------RIQNEELDLS 68
           + S+   ESGWT+YL+ S S  +P                            + EE DLS
Sbjct: 2   LGSSSGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLS 61

Query: 69  MLSDASSGPPIFRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLD 119
           M+SDASSGP    E + V   N  G               ++ K    RR  E+  S LD
Sbjct: 62  MISDASSGPRNISEEDSVKKINIVGL-------------KKQCKREKKRRDYEKMNSLLD 121

[Close]

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: gi|659110101|ref|XP_008455048.1| (PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 9.0e-30
Identity = 78/134 (58.21%), Postives = 92/134 (68.66%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRI-------------QNEELDLSMLSDA 60
           MDH  NLFVSS+GSVESGWTVYLE+SSS F+ RI             +++E+DLSM+SDA
Sbjct: 1   MDHGRNLFVSSDGSVESGWTVYLENSSSYFSRRIDDHKDFYDDDDDDEDQEVDLSMVSDA 60

Query: 61  SSGPPIFREN---EPVFPENESGR--CFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLD 117
           SSGP IF EN   E VFP+N      C+C  TA    K  RKMKGG+  RR +QT SFLD
Sbjct: 61  SSGPQIFPENNNNELVFPQNYDNPPPCYCAKTAGSLLKTGRKMKGGESDRRQQQTTSFLD 120

[Close]

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: gi|778730190|ref|XP_011659723.1| (PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 81/145 (55.86%), Postives = 93/145 (64.14%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSM-FTPRI------------------QNEELDL 60
           MDH HNLFVSS+GSVESGWTVYLE+SSS  F+ RI                  ++EE+DL
Sbjct: 1   MDHGHNLFVSSDGSVESGWTVYLENSSSSYFSRRIDDSNFDAHKDFYNDDDDDEDEEVDL 60

Query: 61  SMLSDASSGPPIFRE--NEPV--FPENESGR--CFCDTTA-TLFPKGSRKMKGGDGRRRP 120
           SM+SDASSGP  F E  NE +  FP+N       FC  TA     K  RKMKG   RRR 
Sbjct: 61  SMVSDASSGPQTFPEHNNEELVNFPQNYENPPPYFCAKTAGRSLLKTGRKMKGSGERRRQ 120

[Close]

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: gi|697120318|ref|XP_009614131.1| (PREDICTED: uncharacterized protein LOC104107114 [Nicotiana tomentosiformis])

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-08
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 1


Query: 16  ESGWTVYLEDS---------SSMFTP-------------RIQNEELDLSMLSDASSGPPI 75
           ESGWT+YLE+S         ++ F+P               + EE DLSM+SDASSGPP 
Sbjct: 16  ESGWTLYLENSVLPPITSCNANKFSPFCEAEKSVKTEQDEEEEEEEDLSMVSDASSGPPH 75

Query: 76  FRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNF 117
           F E +  +  N +G  F        PK + K +   G++   Q  S LDDTASS P F+F
Sbjct: 76  FNEEDQDYGHNNNGFIFHAPINATLPKNNPKRQKAKGKK---QQTSALDDTASS-PFFDF 134

[Close]

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: gi|1021051307|gb|KZN09085.1| (hypothetical protein DCAR_001741 [Daucus carota subsp. sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 1


Query: 16  ESGWTVYLEDSSSMFTP--------------RIQNEELDLSMLSDASSGPPIFRENEPVF 75
           ESGWT+YL+   S  +P                  +E D+SMLSDASSGPP FR+ E   
Sbjct: 14  ESGWTLYLDHEDSFLSPFPSRKSGDDSVKQDEDDYDEEDMSMLSDASSGPPHFRDEEYYG 73

Query: 76  PENESGRCFCDT-TATLFPKGSRKMKGGDGRRR---PEQTASFLDDTASS 108
            +  +   F  T +    PK + K K    +RR    EQ  SFLDDTASS
Sbjct: 74  NDLSNNGFFVQTHSDAALPKNNGKRKKNSEKRRQRVQEQQLSFLDDTASS 123

[Close]

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: gi|147827575|emb|CAN66218.1| (hypothetical protein VITISV_024777 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 51/119 (42.86%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 16  ESGWTVYLEDSSSMFTP------------------RIQNEELDLSMLSDASSGPPIFREN 75
           ESGWT+YLE S     P                    + EE DLSM+SDASSGPP F+E+
Sbjct: 13  ESGWTLYLEHSFLSADPLHRGSGFVDGEVKRGKDEAEEEEEEDLSMVSDASSGPPHFQED 72

Query: 76  EPVFPENESGRCFC--DTTATLFPKGSRKMKGGDGRRRPEQ-TASFLDDTASSDPNFNF 114
           E     N+   CF      ATL     ++ K    R R EQ   SFLDDTASS P FNF
Sbjct: 73  EGYC--NDDNGCFYPHSMAATLVKNNGKRQKIRTHRGRVEQEDPSFLDDTASS-PLFNF 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g07580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6B3_CUCSA	3.2e-26	55.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1	[more]
D7SXN4_VITVI	1.1e-07	42.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g01090 PE=4 SV=...	[more]
A5C0N4_VITVI	1.1e-07	42.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024777 PE=4 SV=1	[more]
A0A166GLG6_DAUCA	1.1e-07	40.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001741 PE=4 SV=1	[more]
A0A0D2URV0_GOSRA	2.0e-07	44.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g07580 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33800.1	7.4e-06	32.35	unknown protein	[more]

BLAST of Cp4.1LG04g07580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110101\|ref\|XP_008455048.1\|	9.0e-30	58.21	PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo]	[more]
gi\|778730190\|ref\|XP_011659723.1\|	4.6e-26	55.86	PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus]	[more]
gi\|697120318\|ref\|XP_009614131.1\|	4.3e-08	38.21	PREDICTED: uncharacterized protein LOC104107114 [Nicotiana tomentosiformis]	[more]
gi\|1021051307\|gb\|KZN09085.1\|	1.6e-07	40.00	hypothetical protein DCAR_001741 [Daucus carota subsp. sativus]	[more]
gi\|147827575\|emb\|CAN66218.1\|	1.6e-07	42.86	hypothetical protein VITISV_024777 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07580.1	Cp4.1LG04g07580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33347	FAMILY NOT NAMED	coord: 2..113 score: 6.1
None	No IPR available	PANTHER	PTHR33347:SF5	SUBFAMILY NOT NAMED	coord: 2..113 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g07580	Cucsa.219070	Cucumber (Gy14) v1	cgycpeB0602
Cp4.1LG04g07580	CmaCh11G016950	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g07580	CmaCh19G005430	Cucurbita maxima (Rimu)	cmacpeB539
Cp4.1LG04g07580	CmoCh11G014250	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g07580	Csa7G070820	Cucumber (Chinese Long) v2	cpecuB695
Cp4.1LG04g07580	MELO3C018527	Melon (DHL92) v3.5.1	cpemeB604
Cp4.1LG04g07580	ClCG02G007090	Watermelon (Charleston Gray)	cpewcgB590
Cp4.1LG04g07580	CSPI07G06770	Wild cucumber (PI 183967)	cpecpiB697
Cp4.1LG04g07580	MELO3C018527.2	Melon (DHL92) v3.6.1	cpemedB715
Cp4.1LG04g07580	CsaV3_7G007740	Cucumber (Chinese Long) v3	cpecucB0868
Cp4.1LG04g07580	Bhi05G000876	Wax gourd	cpewgoB0856
Cp4.1LG04g07580	Carg23042	Silver-seed gourd	carcpeB1033
Cp4.1LG04g07580	Carg16321	Silver-seed gourd	carcpeB0639
Cp4.1LG04g07580	Carg19696	Silver-seed gourd	carcpeB0409

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g07580	Cp4.1LG15g04290	Cucurbita pepo (Zucchini)	cpecpeB269

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g07580	Silver-seed gourd	carcpeB0529
Cp4.1LG04g07580	Cucurbita pepo (Zucchini)	cpecpeB400
Cp4.1LG04g07580	Cucurbita maxima (Rimu)	cmacpeB749
Cp4.1LG04g07580	Cucurbita moschata (Rifu)	cmocpeB321
Cp4.1LG04g07580	Cucurbita moschata (Rifu)	cmocpeB494
Cp4.1LG04g07580	Cucurbita moschata (Rifu)	cmocpeB703
Cp4.1LG04g07580	Bottle gourd (USVL1VR-Ls)	cpelsiB543
Cp4.1LG04g07580	Bottle gourd (USVL1VR-Ls)	cpelsiB548
Cp4.1LG04g07580	Watermelon (97103) v1	cpewmB665
Cp4.1LG04g07580	Cucumber (Gy14) v2	cgybcpeB969