Carg23042 (gene) Silver-seed gourd

NameCarg23042
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAnkyrin repeat and KH domain-containing protein
LocationCucurbita_argyrosperma_scaffold_163 : 135241 .. 136037 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGCTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGAAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGGTCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTATAAATTTTTATTTAATTTTTAAAATTTGAAATTATTTTGATTAATTTTGGTTTAAAATTCAGGAGAGCTCAACCAGCTGCCAAAACCCATCTGGAAATCAAAGGCAGAAGAATCAGTTAAGCCAATTTAGAAGGTTTCGAGTATATTTGAAGTTCAAGAGTATAATTAAAATCTCGAAAGATACCAAGTTTTATATCGATTTTCATTCAAATATTTATAGTTTAGTTCTAAACTCGTTTTTTTTTTTTTTTTTTTTTTTGTCCGCTTCTACTCAATGTAGGCAGATCAACGGGAAGAGATCGGGATTGAAGTAGATGGGAGTTGCTTATCAACGATATCACTTTTTTTCTATATTTTATGTTTAGCTATAAGTGGAGATGGGAGATTAAATCTTCCATCTCTTAAACGGAGGTATATCTCTTTTAACTAGTTGAGCT

mRNA sequence

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGCTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGAAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGGTCCCAACTTCAACTTCCATAATTCGGAGAGCTCAACCAGCTGCCAAAACCCATCTGGAAATCAAAGGCAGAAGAATCAGTTAAGCCAATTTAGAAGGCAGATCAACGGGAAGAGATCGGGATTGAAGTAGATGGGAGTTGCTTATCAACGATATCACTTTTTTTCTATATTTTATGTTTAGCTATAAGTGGAGATGGGAGATTAAATCTTCCATCTCTTAAACGGAGGTATATCTCTTTTAACTAGTTGAGCT

Coding sequence (CDS)

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGCTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGAAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGGTCCCAACTTCAACTTCCATAATTCGGAGAGCTCAACCAGCTGCCAAAACCCATCTGGAAATCAAAGGCAGAAGAATCAGTTAAGCCAATTTAGAAGGCAGATCAACGGGAAGAGATCGGGATTGAAGTAG

Protein sequence

MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPAFPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESSTSCQNPSGNQRQKNQLSQFRRQINGKRSGLK
BLAST of Carg23042 vs. NCBI nr
Match: XP_022927877.1 (uncharacterized protein LOC111434644 isoform X1 [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 4.5e-75
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPA 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEP 
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESST 120
           FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRP+QTASFLDDTASS PNFNFHNSESST
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESST 120

Query: 121 SCQNPSGNQRQKNQLSQFRRQINGKRSGLK 151
           SCQN SGNQRQKNQLSQFR QINGKRSGLK
Sbjct: 121 SCQNRSGNQRQKNQLSQFRTQINGKRSGLK 150

BLAST of Carg23042 vs. NCBI nr
Match: XP_022988988.1 (uncharacterized protein LOC111486186 isoform X1 [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLED-SSSMFTPRIQNEELDLSMLSDASSGPPIFRENEP 60
           MDHRHNLFVSSNGSVESGWTVYLED SSS+FTPRIQNEELDLSMLSDASSGPPIFRENEP
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSSLFTPRIQNEELDLSMLSDASSGPPIFRENEP 60

Query: 61  AFPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESS 120
            FPENESGRCFCDTTPTLF KGSRKMKGGDGRRRP+QTASFLDDTASS PNFNFHNSESS
Sbjct: 61  VFPENESGRCFCDTTPTLFSKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESS 120

Query: 121 TSCQNPSGNQRQKNQLSQFRRQINGKRSGLK 151
           TSCQNPSGNQRQKNQLSQFR+QINGKRSGLK
Sbjct: 121 TSCQNPSGNQRQKNQLSQFRKQINGKRSGLK 151

BLAST of Carg23042 vs. NCBI nr
Match: XP_023531125.1 (uncharacterized protein LOC111793463 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPA 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEP 
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESST 120
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRP+QTASFLDDTASS PNFNFHNSESST
Sbjct: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESST 120

Query: 121 SCQNPSGNQRQ-KNQLSQFRRQINGKRSGL 150
           SCQNPSGNQRQ KNQLSQ RRQINGKRSGL
Sbjct: 121 SCQNPSGNQRQKKNQLSQLRRQINGKRSGL 150

BLAST of Carg23042 vs. NCBI nr
Match: XP_022927878.1 (uncharacterized protein LOC111434644 isoform X2 [Cucurbita moschata])

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-70
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPA 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEP 
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESST 120
           FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRP+QTASFLDDTASS PNFNFHNSESST
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESST 120

Query: 121 SCQNPSGNQRQKNQLSQFRRQINGKRSGLK 151
           SCQN SGNQRQKNQ      QINGKRSGLK
Sbjct: 121 SCQNRSGNQRQKNQ------QINGKRSGLK 144

BLAST of Carg23042 vs. NCBI nr
Match: XP_023531126.1 (uncharacterized protein LOC111793463 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 2.2e-69
Identity = 137/149 (91.95%), Postives = 139/149 (93.29%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPA 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEP 
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNFNFHNSESST 120
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRP+QTASFLDDTASS PNFNFHNSESST
Sbjct: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESST 120

Query: 121 SCQNPSGNQRQKNQLSQFRRQINGKRSGL 150
           SCQNPSGNQRQK       +QINGKRSGL
Sbjct: 121 SCQNPSGNQRQKK-----NQQINGKRSGL 144

BLAST of Carg23042 vs. TrEMBL
Match: tr|A0A1S3C0Q6|A0A1S3C0Q6_CUCME (uncharacterized protein LOC103495318 OS=Cucumis melo OX=3656 GN=LOC103495318 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 91/177 (51.41%), Postives = 105/177 (59.32%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFT-------------PRIQNEELDLSMLSDA 60
           MDH  NLFVSS+GSVESGWTVYLE+SSS F+                     DLSM+SDA
Sbjct: 1   MDHGRNLFVSSDGSVESGWTVYLENSSSYFSRXXXXXXXXXXXXXXXXXXXXDLSMVSDA 60

Query: 61  SSGPPIFRE---NEPAFPENESG--RCFCDTTPTLFPKGSRKMKGGDGRRRPKQTASFLD 120
           SSGP IF E   NE  FP+N      C+C  T     K  RKMKGG+  RR +QT SFLD
Sbjct: 61  SSGPQIFPENNNNELVFPQNYDNPPPCYCAKTAGSLLKTGRKMKGGESDRRQQQTTSFLD 120

Query: 121 DTASSGPNFNFHNSESSTSCQNP---------SGNQRQKNQLSQFRRQINGKRSGLK 151
           DTA+S PNFN +NSE+ST  QN          SGNQRQKNQ  + +     KRSGL+
Sbjct: 121 DTATSDPNFNLNNSENST-YQNQFNSIRKSSLSGNQRQKNQWFKGK-----KRSGLR 171

BLAST of Carg23042 vs. TrEMBL
Match: tr|A0A0A0K6B3|A0A0A0K6B3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070820 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 93/185 (50.27%), Postives = 106/185 (57.30%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLED-SSSMFTPRIQNEEL------------------DL 60
           MDH HNLFVSS+GSVESGWTVYLE+ SSS F+ RI +                     DL
Sbjct: 1   MDHGHNLFVSSDGSVESGWTVYLENSSSSYFSRRIDDSNFDAHKDFYXXXXXXXXXXXDL 60

Query: 61  SMLSDASSGPPIFRE--NEPA--FPENESG--RCFC-DTTPTLFPKGSRKMKGGDGRRRP 120
           SM+SDASSGP  F E  NE    FP+N       FC  T      K  RKMKG   RRR 
Sbjct: 61  SMVSDASSGPQTFPEHNNEELVNFPQNYENPPPYFCAKTAGRSLLKTGRKMKGSGERRRQ 120

Query: 121 KQTASFLDDTASSGPNFNFHNSESSTSCQN---------PSGNQRQKNQLSQFRRQINGK 151
           +QT SFLDDTA+S PNFNF+N+  ++S QN         PSGNQRQKNQ         GK
Sbjct: 121 EQTTSFLDDTATSDPNFNFNNNSENSSYQNQFNTIRKSSPSGNQRQKNQ------WFKGK 179

BLAST of Carg23042 vs. TrEMBL
Match: tr|A0A2R6RGU4|A0A2R6RGU4_ACTCH (Angiogenin-2 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06876 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 56/137 (40.88%), Postives = 68/137 (49.64%), Query Frame = 0

Query: 5   HNLFVS-SNGSVESGWTVYLEDS----------------SSMFTPRIQNEELDLSMLSDA 64
           +NL  S S+   ESGWT+YLE+S                     P+ ++EE DLSM+SDA
Sbjct: 2   NNLLPSESSSGCESGWTLYLEESFLSPYPSHSHDFVNYRGKNRVPKDEDEEEDLSMVSDA 61

Query: 65  SSGPPIFRENEPAFPENESGRCFCDTTPTLFPKG-SRKMKGGDGRRRPK--QTASFLDDT 122
           SSGP IF ENE     +           TL   G ++KMK   G R  K  +  SFLDDT
Sbjct: 62  SSGPQIFHENEFYGNADNGFLSHAAIDATLLKNGANKKMKKNRGNRNRKVEEDPSFLDDT 121

BLAST of Carg23042 vs. TrEMBL
Match: tr|A0A1U7ZB40|A0A1U7ZB40_NELNU (uncharacterized protein LOC104591252 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104591252 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 56/147 (38.10%), Postives = 71/147 (48.30%), Query Frame = 0

Query: 16  ESGWTVYLEDSSSMFTPRIQ-----------------------NEELDLSMLSDASSGPP 75
           ESGWT+YL+ SS    P  +                       +EE DLSM+SDASSGPP
Sbjct: 14  ESGWTMYLDHSSLSTNPYKRCCGLRDEIDFFGQDFRKEETEEGDEEKDLSMVSDASSGPP 73

Query: 76  IFRENEPAFPENESGRCFCDTTPT-LFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNF 135
            F E++  F EN    CF    P  +    S K +  D R++ +   SF DDTASS P F
Sbjct: 74  HFLEDDDYFEEN---GCFSSAFPADVLANKSGKRRKLDQRQQQQHLLSFRDDTASS-PVF 133

Query: 136 NFHNSESSTSCQNPSGNQRQKNQLSQF 139
           NF  SE++ +   PS NQ     L  F
Sbjct: 134 NF--SENNLA---PSNNQDAMEDLLDF 151

BLAST of Carg23042 vs. TrEMBL
Match: tr|A0A1U7Z534|A0A1U7Z534_NELNU (uncharacterized protein LOC104591252 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104591252 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 56/147 (38.10%), Postives = 71/147 (48.30%), Query Frame = 0

Query: 16  ESGWTVYLEDSSSMFTPRIQ-----------------------NEELDLSMLSDASSGPP 75
           ESGWT+YL+ SS    P  +                       +EE DLSM+SDASSGPP
Sbjct: 14  ESGWTMYLDHSSLSTNPYKRCCGLRDEIDFFGQDFRKEETEEGDEEKDLSMVSDASSGPP 73

Query: 76  IFRENEPAFPENESGRCFCDTTPT-LFPKGSRKMKGGDGRRRPKQTASFLDDTASSGPNF 135
            F E++  F EN    CF    P  +    S K +  D R++ +   SF DDTASS P F
Sbjct: 74  HFLEDDDYFEEN---GCFSSAFPADVLANKSGKRRKLDQRQQQQHLLSFRDDTASS-PVF 133

Query: 136 NFHNSESSTSCQNPSGNQRQKNQLSQF 139
           NF  SE++ +   PS NQ     L  F
Sbjct: 134 NF--SENNLA---PSNNQDAMEDLLDF 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927877.14.5e-7596.00uncharacterized protein LOC111434644 isoform X1 [Cucurbita moschata][more]
XP_022988988.13.8e-7495.36uncharacterized protein LOC111486186 isoform X1 [Cucurbita maxima][more]
XP_023531125.11.1e-7396.00uncharacterized protein LOC111793463 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022927878.11.5e-7092.67uncharacterized protein LOC111434644 isoform X2 [Cucurbita moschata][more]
XP_023531126.12.2e-6991.95uncharacterized protein LOC111793463 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3C0Q6|A0A1S3C0Q6_CUCME1.8e-2751.41uncharacterized protein LOC103495318 OS=Cucumis melo OX=3656 GN=LOC103495318 PE=... [more]
tr|A0A0A0K6B3|A0A0A0K6B3_CUCSA3.3e-2650.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070820 PE=4 SV=1[more]
tr|A0A2R6RGU4|A0A2R6RGU4_ACTCH2.4e-0840.88Angiogenin-2 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc0... [more]
tr|A0A1U7ZB40|A0A1U7ZB40_NELNU7.7e-0738.10uncharacterized protein LOC104591252 isoform X2 OS=Nelumbo nucifera OX=4432 GN=L... [more]
tr|A0A1U7Z534|A0A1U7Z534_NELNU7.7e-0738.10uncharacterized protein LOC104591252 isoform X1 OS=Nelumbo nucifera OX=4432 GN=L... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23042-RACarg23042-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..143
NoneNo IPR availablePANTHERPTHR33347:SF5SUBFAMILY NOT NAMEDcoord: 13..125
NoneNo IPR availablePANTHERPTHR33347FAMILY NOT NAMEDcoord: 13..125