CmoCh11G014250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G014250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 10039917 .. 10040395 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTCTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTATAAAGTTTTATTTAATTTTTAAAATTTGAAATTATTTTGATTAATTTTGGTTTAAAATTCAGGAGAGCTCAACCAGCTGCCAAAACCGATCTGGAAATCAAAGGCAGAAGAATCAGTTA

mRNA sequence

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTCTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGAGAGCTCAACCAGCTGCCAAAACCGATCTGGAAATCAAAGGCAGAAGAATCAGTTA

Coding sequence (CDS)

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTCTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGGCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACAACGCCCACACTTTTCCCGAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGAGAGCTCAACCAGCTGCCAAAACCGATCTGGAAATCAAAGGCAGAAGAATCAGTTA

Homology

[Close]

BLAST of CmoCh11G014250 vs. TrEMBL
Match: A0A0A0K6B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSM-FTPRI------------------QNEELDL 60
           MDH HNLFVSS+GSVESGWT+YLE+SSS  F+ RI                  ++EE+DL
Sbjct: 1   MDHGHNLFVSSDGSVESGWTVYLENSSSSYFSRRIDDSNFDAHKDFYNDDDDDEDEEVDL 60

Query: 61  SMLSDASSGPPIFRE--NEPV--FPENESGR--CFC-DTTPTLFPKGSRKMKGGDGRRRP 120
           SM+SDASSGP  F E  NE +  FP+N       FC  T      K  RKMKG   RRR 
Sbjct: 61  SMVSDASSGPQTFPEHNNEELVNFPQNYENPPPYFCAKTAGRSLLKTGRKMKGSGERRRQ 120

Query: 121 EQTASFLDDTASSDPNFNFHNSESSTSCQNR---------SGNQRQKNQ 135
           EQT SFLDDTA+SDPNFNF+N+  ++S QN+         SGNQRQKNQ
Sbjct: 121 EQTTSFLDDTATSDPNFNFNNNSENSSYQNQFNTIRKSSPSGNQRQKNQ 169

[Close]

BLAST of CmoCh11G014250 vs. TrEMBL
Match: A0A166GLG6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001741 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 49/129 (37.98%), Postives = 62/129 (48.06%), Query Frame = 1


Query: 16  ESGWTLYLEDSSSMFTP--------------RIQNEELDLSMLSDASSGPPIFRENEPVF 75
           ESGWTLYL+   S  +P                  +E D+SMLSDASSGPP FR+ E   
Sbjct: 14  ESGWTLYLDHEDSFLSPFPSRKSGDDSVKQDEDDYDEEDMSMLSDASSGPPHFRDEEYYG 73

Query: 76  PENESGRCFCDT-TPTLFPKGSRKMKGGDGRRR---PEQTASFLDDTAS------SDPNF 121
            +  +   F  T +    PK + K K    +RR    EQ  SFLDDTAS      S  N 
Sbjct: 74  NDLSNNGFFVQTHSDAALPKNNGKRKKNSEKRRQRVQEQQLSFLDDTASSPIFDVSSNNI 133

[Close]

BLAST of CmoCh11G014250 vs. TrEMBL
Match: A0A067GPC0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041673mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1


Query: 10  SSNGSVESGWTLYLEDSSSMFTPRIQ---------NEELDLSMLSDASSGPPIFRENEPV 69
           SS    ESGWT YL D SS+   R Q          EE DLSM+SDASSGPP + E++  
Sbjct: 5   SSGSGCESGWTSYL-DQSSLSRNRNQCYSLGDGHNEEEDDLSMVSDASSGPPHYCEHDED 64

Query: 70  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSESS 120
             + +   C       L P  S+  K    + + +Q  S+LDDTASS  N +F  +E+S
Sbjct: 65  CFDEKGSFCSPHLPSELAPAKSKNKK----KIKQQQHNSYLDDTASSPKNISFSKNEAS 118

[Close]

BLAST of CmoCh11G014250 vs. TrEMBL
Match: A0A0D2TP63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 1


Query: 6   NLFVSSNGS-VESGWTLYLEDSS------SMFTP--RIQNEELDLSMLSDASSGPPIF-R 65
           N+  S  GS  ESGWTLYL+ SS        F+   R+++EE DLSM+SDASSGP  + +
Sbjct: 2   NMSASQCGSGCESGWTLYLDQSSYSQKRCQKFSRSFRVEDEEQDLSMVSDASSGPRHYCQ 61

Query: 66  ENEPVFPENESGRCFCDT-TPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASS 108
           + E    EN    CFC T  P    K S K K         Q  S+LDDTASS
Sbjct: 62  DYEECLDEN---GCFCSTPAPPEPAKKSSKNKKKIKEHGSNQQHSYLDDTASS 111

[Close]

BLAST of CmoCh11G014250 vs. TrEMBL
Match: A0A0D2TTQ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 1


Query: 6   NLFVSSNGS-VESGWTLYLEDSS------SMFTP--RIQNEELDLSMLSDASSGPPIF-R 65
           N+  S  GS  ESGWTLYL+ SS        F+   R+++EE DLSM+SDASSGP  + +
Sbjct: 2   NMSASQCGSGCESGWTLYLDQSSYSQKRCQKFSRSFRVEDEEQDLSMVSDASSGPRHYCQ 61

Query: 66  ENEPVFPENESGRCFCDT-TPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASS 108
           + E    EN    CFC T  P    K S K K         Q  S+LDDTASS
Sbjct: 62  DYEECLDEN---GCFCSTPAPPEPAKKSSKNKKKIKEHGSNQQHSYLDDTASS 111

[Close]

BLAST of CmoCh11G014250 vs. TAIR10
Match: AT4G33800.1 (AT4G33800.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 45/131 (34.35%), Postives = 55/131 (41.98%), Query Frame = 1


Query: 9   VSSNGSVESGWTLYLEDSSSMFTP--------------------------RIQNEELDLS 68
           + S+   ESGWTLYL+ S S  +P                            + EE DLS
Sbjct: 2   LGSSSGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLS 61

Query: 69  MLSDASSGPPIFRENEPVFPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLD 114
           M+SDASSGP    E + V   N  G               ++ K    RR  E+  S LD
Sbjct: 62  MISDASSGPRNISEEDSVKKINIVGL-------------KKQCKREKKRRDYEKMNSLLD 118

[Close]

BLAST of CmoCh11G014250 vs. NCBI nr
Match: gi|659110101|ref|XP_008455048.1| (PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 90/161 (55.90%), Postives = 107/161 (66.46%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRI-------------QNEELDLSMLSDA 60
           MDH  NLFVSS+GSVESGWT+YLE+SSS F+ RI             +++E+DLSM+SDA
Sbjct: 1   MDHGRNLFVSSDGSVESGWTVYLENSSSYFSRRIDDHKDFYDDDDDDEDQEVDLSMVSDA 60

Query: 61  SSGPPIFREN---EPVFPENESGR--CFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLD 120
           SSGP IF EN   E VFP+N      C+C  T     K  RKMKGG+  RR +QT SFLD
Sbjct: 61  SSGPQIFPENNNNELVFPQNYDNPPPCYCAKTAGSLLKTGRKMKGGESDRRQQQTTSFLD 120

Query: 121 DTASSDPNFNFHNSESSTSCQNR---------SGNQRQKNQ 135
           DTA+SDPNFN +NSE+ST  QN+         SGNQRQKNQ
Sbjct: 121 DTATSDPNFNLNNSENST-YQNQFNSIRKSSLSGNQRQKNQ 160

[Close]

BLAST of CmoCh11G014250 vs. NCBI nr
Match: gi|778730190|ref|XP_011659723.1| (PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.6e-27
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 1


Query: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSM-FTPRI------------------QNEELDL 60
           MDH HNLFVSS+GSVESGWT+YLE+SSS  F+ RI                  ++EE+DL
Sbjct: 1   MDHGHNLFVSSDGSVESGWTVYLENSSSSYFSRRIDDSNFDAHKDFYNDDDDDEDEEVDL 60

Query: 61  SMLSDASSGPPIFRE--NEPV--FPENESGR--CFC-DTTPTLFPKGSRKMKGGDGRRRP 120
           SM+SDASSGP  F E  NE +  FP+N       FC  T      K  RKMKG   RRR 
Sbjct: 61  SMVSDASSGPQTFPEHNNEELVNFPQNYENPPPYFCAKTAGRSLLKTGRKMKGSGERRRQ 120

Query: 121 EQTASFLDDTASSDPNFNFHNSESSTSCQNR---------SGNQRQKNQ 135
           EQT SFLDDTA+SDPNFNF+N+  ++S QN+         SGNQRQKNQ
Sbjct: 121 EQTTSFLDDTATSDPNFNFNNNSENSSYQNQFNTIRKSSPSGNQRQKNQ 169

[Close]

BLAST of CmoCh11G014250 vs. NCBI nr
Match: gi|697120318|ref|XP_009614131.1| (PREDICTED: uncharacterized protein LOC104107114 [Nicotiana tomentosiformis])

HSP 1 Score: 66.2 bits (160), Expect = 4.9e-08
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = 1


Query: 16  ESGWTLYLEDS---------SSMFTP-------------RIQNEELDLSMLSDASSGPPI 75
           ESGWTLYLE+S         ++ F+P               + EE DLSM+SDASSGPP 
Sbjct: 16  ESGWTLYLENSVLPPITSCNANKFSPFCEAEKSVKTEQDEEEEEEEDLSMVSDASSGPPH 75

Query: 76  FRENEPVFPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNF 117
           F E +  +  N +G  F        PK + K +   G++   Q  S LDDTASS P F+F
Sbjct: 76  FNEEDQDYGHNNNGFIFHAPINATLPKNNPKRQKAKGKK---QQTSALDDTASS-PFFDF 134

[Close]

BLAST of CmoCh11G014250 vs. NCBI nr
Match: gi|1021051307|gb|KZN09085.1| (hypothetical protein DCAR_001741 [Daucus carota subsp. sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 49/129 (37.98%), Postives = 62/129 (48.06%), Query Frame = 1


Query: 16  ESGWTLYLEDSSSMFTP--------------RIQNEELDLSMLSDASSGPPIFRENEPVF 75
           ESGWTLYL+   S  +P                  +E D+SMLSDASSGPP FR+ E   
Sbjct: 14  ESGWTLYLDHEDSFLSPFPSRKSGDDSVKQDEDDYDEEDMSMLSDASSGPPHFRDEEYYG 73

Query: 76  PENESGRCFCDT-TPTLFPKGSRKMKGGDGRRR---PEQTASFLDDTAS------SDPNF 121
            +  +   F  T +    PK + K K    +RR    EQ  SFLDDTAS      S  N 
Sbjct: 74  NDLSNNGFFVQTHSDAALPKNNGKRKKNSEKRRQRVQEQQLSFLDDTASSPIFDVSSNNI 133

[Close]

BLAST of CmoCh11G014250 vs. NCBI nr
Match: gi|470106860|ref|XP_004289774.1| (PREDICTED: uncharacterized protein LOC101307352 [Fragaria vesca subsp. vesca])

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 57/140 (40.71%), Postives = 68/140 (48.57%), Query Frame = 1


Query: 16  ESGWTLYLEDSSSMFTP-----------RI----------QNEELDLSMLSDASSGPPIF 75
           ESGWTLYLE S     P           RI          + EE D SM+SDASSGPP F
Sbjct: 13  ESGWTLYLEQSFLSQHPSNGFCEEFKEKRISYSNEDEEEEEEEEEDQSMVSDASSGPPHF 72

Query: 76  RENEPVFPENESGRCF--CDTTPTLFPKGSR---KMKGG-DGRRRPEQTASFLDDTASSD 129
            E+E  F EN +G  +      PTL   G +   K KG   G+ + +Q  SFLDDTASS 
Sbjct: 73  NEDEVYFDENNNGSFYPPSKDVPTLKFGGKKQKIKEKGRCGGQDQQQQQPSFLDDTASS- 132

The following BLAST results are available for this feature:

BLAST of CmoCh11G014250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G014250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6B3_CUCSA	2.5e-27	52.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1	[more]
A0A166GLG6_DAUCA	2.2e-07	37.98	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001741 PE=4 SV=1	[more]
A0A067GPC0_CITSI	3.8e-07	39.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041673mg PE=4 SV=1	[more]
A0A0D2TP63_GOSRA	6.4e-07	44.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1	[more]
A0A0D2TTQ9_GOSRA	6.4e-07	44.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G220800 PE=4 SV=1	[more]

BLAST of CmoCh11G014250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33800.1	4.8e-06	34.35	unknown protein	[more]

BLAST of CmoCh11G014250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110101\|ref\|XP_008455048.1\|	1.4e-31	55.90	PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo]	[more]
gi\|778730190\|ref\|XP_011659723.1\|	3.6e-27	52.66	PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus]	[more]
gi\|697120318\|ref\|XP_009614131.1\|	4.9e-08	39.02	PREDICTED: uncharacterized protein LOC104107114 [Nicotiana tomentosiformis]	[more]
gi\|1021051307\|gb\|KZN09085.1\|	3.2e-07	37.98	hypothetical protein DCAR_001741 [Daucus carota subsp. sativus]	[more]
gi\|470106860\|ref\|XP_004289774.1\|	3.2e-07	40.71	PREDICTED: uncharacterized protein LOC101307352 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G014250.1	CmoCh11G014250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33347	FAMILY NOT NAMED	coord: 2..126 score: 2.0
None	No IPR available	PANTHER	PTHR33347:SF5	SUBFAMILY NOT NAMED	coord: 2..126 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G014250	Cucsa.219070	Cucumber (Gy14) v1	cgycmoB0624
CmoCh11G014250	CmaCh19G005430	Cucurbita maxima (Rimu)	cmacmoB494
CmoCh11G014250	CmaCh11G016950	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G014250	Csa7G070820	Cucumber (Chinese Long) v2	cmocuB137
CmoCh11G014250	MELO3C018527	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G014250	ClCG02G007090	Watermelon (Charleston Gray)	cmowcgB088
CmoCh11G014250	CSPI07G06770	Wild cucumber (PI 183967)	cmocpiB136
CmoCh11G014250	Cp4.1LG15g04290	Cucurbita pepo (Zucchini)	cmocpeB095
CmoCh11G014250	Cp4.1LG14g04510	Cucurbita pepo (Zucchini)	cmocpeB092
CmoCh11G014250	Cp4.1LG04g07580	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G014250	MELO3C018527.2	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G014250	CsaV3_7G007740	Cucumber (Chinese Long) v3	cmocucB0160
CmoCh11G014250	Cla97C02G033930	Watermelon (97103) v2	cmowmbB088
CmoCh11G014250	Bhi05G000876	Wax gourd	cmowgoB0120
CmoCh11G014250	Carg16321	Silver-seed gourd	carcmoB0612
CmoCh11G014250	Carg23042	Silver-seed gourd	carcmoB0997

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G014250	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh11G014250	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh11G014250	Cucurbita moschata (Rifu)	cmocmoB125
CmoCh11G014250	Cucurbita maxima (Rimu)	cmacmoB318
CmoCh11G014250	Cucurbita maxima (Rimu)	cmacmoB678
CmoCh11G014250	Watermelon (97103) v1	cmowmB109
CmoCh11G014250	Cucurbita pepo (Zucchini)	cmocpeB114
CmoCh11G014250	Bottle gourd (USVL1VR-Ls)	cmolsiB103
CmoCh11G014250	Bottle gourd (USVL1VR-Ls)	cmolsiB108
CmoCh11G014250	Cucumber (Gy14) v2	cgybcmoB881
CmoCh11G014250	Silver-seed gourd	carcmoB0401
CmoCh11G014250	Silver-seed gourd	carcmoB0508