Cp4.1LG04g01980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g01980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPeptidyl-prolyl cis-trans isomerase
LocationCp4.1LG04 : 186828 .. 187088 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGAACCGAACACCAATGGTTCTCAGTTCTTCATTTGTACTGAGAAGACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGGTGGTTACAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATAGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAAGCATCTGAGAGTTGAAGTTAGAAACGTTTGA

mRNA sequence

ATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGAACCGAACACCAATGGTTCTCAGTTCTTCATTTGTACTGAGAAGACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGGTGGTTACAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATAGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAAGCATCTGAGAGTTGAAGTTAGAAACGTTTGA

Coding sequence (CDS)

ATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGAACCGAACACCAATGGTTCTCAGTTCTTCATTTGTACTGAGAAGACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGGTGGTTACAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATAGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAAGCATCTGAGAGTTGAAGTTAGAAACGTTTGA

Protein sequence

MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSGRTSETVVIEDCGQIDKHLRVEVRNV
Homology
[Close]
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-31
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMANS PNTNGSQFFICTEKTSWLDGKHVVFGKVV GYNVVK ME VGSD 
Sbjct: 97  LKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDM 156

Query: 61  GRTSETVVIEDCGQI 76
           G  SE VVIEDCG++
Sbjct: 157 GNPSERVVIEDCGEL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-30
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+  NTNGSQFFICTEKTSWLDGKHVVFG+VV G NVV+++EKVGSDSG
Sbjct: 99  KHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSG 158

Query: 62  RTSETVVIEDCGQI 76
           RTS+ VVI DCGQI
Sbjct: 159 RTSKPVVIADCGQI 172

[Close]
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-28
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTG G+LSMANS PNTNGSQFFICT+KTSWLDGKHVVFG+VV G +VVK +EKVGSDSG
Sbjct: 98  KHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSG 157

Query: 62  RTSETVVIEDCGQI 76
           +TS+ V I DCGQ+
Sbjct: 158 KTSKVVTITDCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-28
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+ PNTNGSQFFICT KT WLDGKHVVFG+VV G +VVK +EKVGS SG
Sbjct: 98  KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG 157

Query: 62  RTSETVVIEDCGQI 76
           RT++ VV+EDCGQ+
Sbjct: 158 RTAKKVVVEDCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match: CYP1_SOYBN (Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max GN=Cyp1 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-28
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+ P TNGSQFFICTEKT WLDGKHVVFG+V+ G NVVK++EKVGS SG
Sbjct: 98  KHTGPGILSMANAGPGTNGSQFFICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSG 157

Query: 62  RTSETVVIEDCGQ 75
           RTS+ VVI +CGQ
Sbjct: 158 RTSKPVVIANCGQ 170

[Close]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match: B5LWR0_ZIZJJ (Peptidyl-prolyl cis-trans isomerase OS=Ziziphus jujuba GN=CyP PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.3e-32
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMAN+ PNTNGSQFFICTEKT WLDGKHVVFGKVV GYNVVKEMEKVGSDS
Sbjct: 97  LKHTGPGILSMANAGPNTNGSQFFICTEKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSDS 156

Query: 61  GRTSETVVIEDCGQI 76
           GRTS+ VVIEDCGQI
Sbjct: 157 GRTSQPVVIEDCGQI 171

[Close]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match: B9S7J2_RICCO (Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_0608620 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           MKHTGPG+LSMAN+ PNTNGSQFFICTEKT WLDGKHVVFGKVV GY+VVKEMEKVGS+S
Sbjct: 97  MKHTGPGILSMANAGPNTNGSQFFICTEKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSES 156

Query: 61  GRTSETVVIEDCGQIDKH 79
           GRTS+ VVIEDCGQI ++
Sbjct: 157 GRTSQGVVIEDCGQITEN 174

[Close]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match: A0A103YE52_CYNCS (Peptidyl-prolyl cis-trans isomerase OS=Cynara cardunculus var. scolymus GN=Ccrd_014247 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-31
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMAN+ PNTNGSQFFICT+KTSWLDGKHVVFGKVV GY VVKEMEKVGSDS
Sbjct: 97  IKHTGPGILSMANAGPNTNGSQFFICTDKTSWLDGKHVVFGKVVDGYKVVKEMEKVGSDS 156

Query: 61  GRTSETVVIEDCGQIDKH 79
           G TS TVVIEDCG+I ++
Sbjct: 157 GSTSSTVVIEDCGEIKEN 174

[Close]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match: V4VS87_9ROSI (Peptidyl-prolyl cis-trans isomerase OS=Citrus clementina GN=CICLE_v10022535mg PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-31
Identity = 63/75 (84.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           MKHTGPG+LSMAN+ PNTNGSQFFICT+KT WLDGKHVVFGKVV GY+V+K+MEKVGS+S
Sbjct: 97  MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES 156

Query: 61  GRTSETVVIEDCGQI 76
           GRTS+TVVIEDCGQ+
Sbjct: 157 GRTSQTVVIEDCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match: A0A166JH20_PANGI (Cyclophilin OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMAN+  NTNGSQFF+CTEKTSWLDGKHVVFGKVV GY+VVKEMEKVGSD 
Sbjct: 97  VKHTGPGILSMANAGRNTNGSQFFLCTEKTSWLDGKHVVFGKVVDGYSVVKEMEKVGSDG 156

Query: 61  GRTSETVVIEDCGQIDK 78
           G+TS TVVIEDCGQID+
Sbjct: 157 GQTSSTVVIEDCGQIDE 173

[Close]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match: AT3G56070.1 (AT3G56070.1 rotamase cyclophilin 2)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-32
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMANS PNTNGSQFFICTEKTSWLDGKHVVFGKVV GYNVVK ME VGSD 
Sbjct: 97  LKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDM 156

Query: 61  GRTSETVVIEDCGQI 76
           G  SE VVIEDCG++
Sbjct: 157 GNPSERVVIEDCGEL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match: AT2G16600.1 (AT2G16600.1 rotamase CYP 3)

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-31
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+  NTNGSQFFICTEKTSWLDGKHVVFG+VV G NVV+++EKVGSDSG
Sbjct: 99  KHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSG 158

Query: 62  RTSETVVIEDCGQI 76
           RTS+ VVI DCGQI
Sbjct: 159 RTSKPVVIADCGQI 172

[Close]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match: AT4G34870.1 (AT4G34870.1 rotamase cyclophilin 5)

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-29
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTG G+LSMANS PNTNGSQFFICT+KTSWLDGKHVVFG+VV G +VVK +EKVGSDSG
Sbjct: 98  KHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSG 157

Query: 62  RTSETVVIEDCGQI 76
           +TS+ V I DCGQ+
Sbjct: 158 KTSKVVTITDCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match: AT4G38740.1 (AT4G38740.1 rotamase CYP 1)

HSP 1 Score: 116.7 bits (291), Expect = 7.1e-27
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+  NTNGSQFFICT KT WLDGKHVVFG+VV G +VVK +EKVGS SG
Sbjct: 98  KHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSG 157

Query: 62  RTSETVVIEDCGQI 76
           + ++ VV+ DCGQ+
Sbjct: 158 KPTKPVVVADCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match: AT2G21130.1 (AT2G21130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-27
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 2   KHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDSG 61
           KHTGPG+LSMAN+  NTNGSQFFICT KT WLDGKHVVFG+VV G +VVK +EK+GS SG
Sbjct: 99  KHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSG 158

Query: 62  RTSETVVIEDCGQI 76
           + ++ VVI DCG+I
Sbjct: 159 KPTKPVVIADCGEI 172

[Close]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match: gi|1009117537|ref|XP_015875370.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Ziziphus jujuba])

HSP 1 Score: 144.4 bits (363), Expect = 9.0e-32
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMAN+ PNTNGSQFFICTEKT WLDGKHVVFGKVV GYNVVKEMEKVGSDS
Sbjct: 97  LKHTGPGILSMANAGPNTNGSQFFICTEKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSDS 156

Query: 61  GRTSETVVIEDCGQI 76
           GRTS+ VVIEDCGQI
Sbjct: 157 GRTSQPVVIEDCGQI 171

[Close]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match: gi|1000959172|ref|XP_015576540.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Ricinus communis])

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           MKHTGPG+LSMAN+ PNTNGSQFFICTEKT WLDGKHVVFGKVV GY+VVKEMEKVGS+S
Sbjct: 97  MKHTGPGILSMANAGPNTNGSQFFICTEKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSES 156

Query: 61  GRTSETVVIEDCGQIDKH 79
           GRTS+ VVIEDCGQI ++
Sbjct: 157 GRTSQGVVIEDCGQITEN 174

[Close]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match: gi|976923089|gb|KVI07437.1| (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           +KHTGPG+LSMAN+ PNTNGSQFFICT+KTSWLDGKHVVFGKVV GY VVKEMEKVGSDS
Sbjct: 97  IKHTGPGILSMANAGPNTNGSQFFICTDKTSWLDGKHVVFGKVVDGYKVVKEMEKVGSDS 156

Query: 61  GRTSETVVIEDCGQIDKH 79
           G TS TVVIEDCG+I ++
Sbjct: 157 GSTSSTVVIEDCGEIKEN 174

[Close]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match: gi|567900452|ref|XP_006442714.1| (hypothetical protein CICLE_v10022535mg [Citrus clementina])

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 63/75 (84.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           MKHTGPG+LSMAN+ PNTNGSQFFICT+KT WLDGKHVVFGKVV GY+V+K+MEKVGS+S
Sbjct: 97  MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES 156

Query: 61  GRTSETVVIEDCGQI 76
           GRTS+TVVIEDCGQ+
Sbjct: 157 GRTSQTVVIEDCGQL 171

[Close]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match: gi|568868998|ref|XP_006487732.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Citrus sinensis])

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 63/75 (84.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   MKHTGPGVLSMANSEPNTNGSQFFICTEKTSWLDGKHVVFGKVVGGYNVVKEMEKVGSDS 60
           MKHTGPG+LSMAN+ PNTNGSQFFICT+KT WLDGKHVVFGKVV GY+V+K+MEKVGS+S
Sbjct: 97  MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES 156

Query: 61  GRTSETVVIEDCGQI 76
           GRTS+TVVIEDCGQ+
Sbjct: 157 GRTSQTVVIEDCGQL 171

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g01980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CP19C_ARATH2.0e-3184.00Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 P... [more]
CP19A_ARATH6.4e-3082.43Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 P... [more]
CP18D_ARATH2.1e-2878.38Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 P... [more]
CYPH_CATRO2.1e-2877.03Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1[more]
CYP1_SOYBN4.6e-2878.08Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max GN=Cyp1 PE=2 SV=1[more]
BLAST of Cp4.1LG04g01980 vs. TrEMBL
Match NameE-valueIdentityDescription
B5LWR0_ZIZJJ6.3e-3289.33Peptidyl-prolyl cis-trans isomerase OS=Ziziphus jujuba GN=CyP PE=2 SV=1[more]
B9S7J2_RICCO3.1e-3184.62Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_0608620 PE=3 SV=... [more]
A0A103YE52_CYNCS6.9e-3183.33Peptidyl-prolyl cis-trans isomerase OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
V4VS87_9ROSI6.9e-3184.00Peptidyl-prolyl cis-trans isomerase OS=Citrus clementina GN=CICLE_v10022535mg PE... [more]
A0A166JH20_PANGI6.9e-3184.42Cyclophilin OS=Panax ginseng PE=2 SV=1[more]
BLAST of Cp4.1LG04g01980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56070.11.1e-3284.00 rotamase cyclophilin 2[more]
AT2G16600.13.6e-3182.43 rotamase CYP 3[more]
AT4G34870.11.2e-2978.38 rotamase cyclophilin 5[more]
AT4G38740.17.1e-2771.62 rotamase CYP 1[more]
AT2G21130.19.2e-2771.62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein[more]
BLAST of Cp4.1LG04g01980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009117537|ref|XP_015875370.1|9.0e-3289.33PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Ziziphus jujuba][more]
gi|1000959172|ref|XP_015576540.1|4.5e-3184.62PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Ricinus communis][more]
gi|976923089|gb|KVI07437.1|9.9e-3183.33Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain-containing protein [... [more]
gi|567900452|ref|XP_006442714.1|9.9e-3184.00hypothetical protein CICLE_v10022535mg [Citrus clementina][more]
gi|568868998|ref|XP_006487732.1|9.9e-3184.00PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0001510 RNA methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0007165 signal transduction
cellular_component GO:0005829 cytosol
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0016018 cyclosporin A binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g01980.1Cp4.1LG04g01980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPRINTSPR00153CSAPPISMRASEcoord: 7..22
score: 2.5E-21coord: 35..50
score: 2.5E-21coord: 22..34
score: 2.5
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 2..73
score: 6.6
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPROFILEPS50072CSA_PPIASE_2coord: 1..74
score: 19
IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomerasePANTHERPTHR11071PEPTIDYL-PROLYL CIS-TRANS ISOMERASEcoord: 1..75
score: 2.2
NoneNo IPR availablePANTHERPTHR11071:SF252PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP18-3-RELATEDcoord: 1..75
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g01980CmoCh11G010000Cucurbita moschata (Rifu)cmocpeB127
Cp4.1LG04g01980MELO3C024662Melon (DHL92) v3.5.1cpemeB617
Cp4.1LG04g01980MELO3C024662.2Melon (DHL92) v3.6.1cpemedB729
Cp4.1LG04g01980CsaV3_1G045550Cucumber (Chinese Long) v3cpecucB0799
Cp4.1LG04g01980Bhi02G001030Wax gourdcpewgoB0899
Cp4.1LG04g01980CsGy1G032230Cucumber (Gy14) v2cgybcpeB112
Cp4.1LG04g01980Carg16479Silver-seed gourdcarcpeB1261
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g01980Cp4.1LG05g08450Cucurbita pepo (Zucchini)cpecpeB494
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g01980Cucurbita pepo (Zucchini)cpecpeB504
Cp4.1LG04g01980Cucumber (Gy14) v1cgycpeB0771
Cp4.1LG04g01980Cucurbita maxima (Rimu)cmacpeB095
Cp4.1LG04g01980Cucurbita maxima (Rimu)cmacpeB147
Cp4.1LG04g01980Cucurbita moschata (Rifu)cmocpeB071
Cp4.1LG04g01980Wild cucumber (PI 183967)cpecpiB644
Cp4.1LG04g01980Cucumber (Chinese Long) v2cpecuB639
Cp4.1LG04g01980Bottle gourd (USVL1VR-Ls)cpelsiB559
Cp4.1LG04g01980Watermelon (Charleston Gray)cpewcgB620