Carg16479 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16479
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptidyl-prolyl cis-trans isomerase
Location	Cucurbita_argyrosperma_scaffold_130 : 893434 .. 893758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCAAGGAGGAGATTTCACAAGGGGTAATGGAACAGGAGGAGAATCAATCTATGGCATGAAGTTTGCAGATGAAAACTACAAGATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGGACAGAAACACCAATGGTTCTCAGTTCTTCATTTGTACTGAGAAGACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGATGGTTATAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATGGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAGCATCTAG

mRNA sequence

ATGTGCCAAGGAGGAGATTTCACAAGGGGTAATGGAACAGGAGGAGAATCAATCTATGGCATGAAGTTTGCAGATGAAAACTACAAGATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGGACAGAAACACCAATGGTTCTCAACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGATGGTTATAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATGGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAGCATCTAG

Coding sequence (CDS)

ATGTGCCAAGGAGGAGATTTCACAAGGGGTAATGGAACAGGAGGAGAATCAATCTATGGCATGAAGTTTGCAGATGAAAACTACAAGATGAAACACACCGGACCGGGTGTACTATCAATGGCGAATTCTGGACAGAAACACCAATGGTTCTCAACTTCATGGCTGGATGGGAAGCATGTTGTGTTTGGAAAAGTTGTAGATGGTTATAATGTAGTCAAGGAGATGGAGAAGGTGGGATCTGATGGTGGGAGGACTTCTGAAACTGTTGTGATAGAGGACTGCGGGCAGATAGATAGCATCTAG

Protein sequence

MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQKHQWFSTSWLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQIDSI

Homology

[Close]

BLAST of Carg16479 vs. NCBI nr
Match: ANA12002.1 (cyclophilin [Panax ginseng])

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+ +KHTGPG+LSMAN+G+     Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGQKFADENFNVKHTGPGILSMANAGRNTNGSQFFLCTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQID 99
           WLDGKHVVFGKVVDGY+VVKEMEKVGSDGG+TS TVVIEDCGQID
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSDGGQTSSTVVIEDCGQID 172

[Close]

BLAST of Carg16479 vs. NCBI nr
Match: OVA02441.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain [Macleaya cordata])

HSP 1 Score: 169.5 bits (428), Expect = 5.9e-39
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYGMKF DEN+KMKHTGPG+LSMAN+G      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGMKFEDENFKMKHTGPGILSMANAGPNTNGSQFFICTDKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY++VKEMEKVGSDGG TS TVVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYSIVKEMEKVGSDGGTTSSTVVIEDCGEV 171

[Close]

BLAST of Carg16479 vs. NCBI nr
Match: XP_022156642.1 (peptidyl-prolyl cis-trans isomerase CYP19-3 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT+GNGTGGESIYG+KFADEN+KM+HTGPGVLSMAN+G      Q+F     T 
Sbjct: 68  MCQGGDFTKGNGTGGESIYGLKFADENFKMRHTGPGVLSMANAGPNTNGSQFFICTEKTP 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGYNVV+EMEKVGSD G+TSETVVIEDCGQ+
Sbjct: 128 WLDGKHVVFGKVVDGYNVVQEMEKVGSDSGKTSETVVIEDCGQV 171

[Close]

BLAST of Carg16479 vs. NCBI nr
Match: PSS05006.1 (Peptidyl-prolyl cis-trans isomerase [Actinidia chinensis var. chinensis])

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+KMKHTGPG+LSMAN+G      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGQKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY+VVKEMEKVGS+GG TS TVVIEDCGQI
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSNGGTTSATVVIEDCGQI 171

[Close]

BLAST of Carg16479 vs. NCBI nr
Match: PWA85506.1 (cyclophilin [Artemisia annua])

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+K+KHTGPG+LSMANSG      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGAKFADENFKIKHTGPGILSMANSGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY+VVKEMEKVGSDGGRTS  VVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSDGGRTSSEVVIEDCGEV 171

[Close]

BLAST of Carg16479 vs. TAIR10
Match: AT3G56070.1 (rotamase cyclophilin 2)

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-39
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KF DEN+K+KHTGPG+LSMANSG      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGYNVVK ME VGSD G  SE VVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171

[Close]

BLAST of Carg16479 vs. TAIR10
Match: AT2G16600.1 (rotamase CYP 3)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-36
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT GNGTGGESIYG KF DEN+  KHTGPG+LSMAN+G      Q+F     TS
Sbjct: 69  MCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTS 128

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV+G NVV+++EKVGSD GRTS+ VVI DCGQI
Sbjct: 129 WLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQI 172

[Close]

BLAST of Carg16479 vs. TAIR10
Match: AT2G21130.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-34
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT+GNGTGGESIYG KF DEN++ KHTGPG+LSMAN+G      Q+F     T 
Sbjct: 69  MCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTD 128

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQIDS 100
           WLDGKHVVFG+VV+G +VVK +EK+GS  G+ ++ VVI DCG+I S
Sbjct: 129 WLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEISS 174

[Close]

BLAST of Carg16479 vs. TAIR10
Match: AT4G38740.1 (rotamase CYP 1)

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-33
Identity = 67/104 (64.42%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT GNGTGGESIYG KF DEN++ KHTGPG+LSMAN+G      Q+F     T 
Sbjct: 68  MCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTD 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV+G +VVK +EKVGS  G+ ++ VV+ DCGQ+
Sbjct: 128 WLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQL 171

[Close]

BLAST of Carg16479 vs. TAIR10
Match: AT4G34870.1 (rotamase cyclophilin 5)

HSP 1 Score: 137.9 bits (346), Expect = 3.4e-33
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT  NGTGGESIYG KF DEN+  KHTG G+LSMANSG      Q+F     TS
Sbjct: 68  MCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV G +VVK +EKVGSD G+TS+ V I DCGQ+
Sbjct: 128 WLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQL 171

[Close]

BLAST of Carg16479 vs. Swiss-Prot
Match: sp|Q38867|CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana OX=3702 GN=CYP19-3 PE=2 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 3.4e-38
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KF DEN+K+KHTGPG+LSMANSG      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGYNVVK ME VGSD G  SE VVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171

[Close]

BLAST of Carg16479 vs. Swiss-Prot
Match: sp|Q38900|CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana OX=3702 GN=CYP19-1 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-35
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT GNGTGGESIYG KF DEN+  KHTGPG+LSMAN+G      Q+F     TS
Sbjct: 69  MCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTS 128

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV+G NVV+++EKVGSD GRTS+ VVI DCGQI
Sbjct: 129 WLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQI 172

[Close]

BLAST of Carg16479 vs. Swiss-Prot
Match: sp|Q39613|CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus OX=4058 GN=PCKR1 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-34
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT GNGTGGESIYG KFADEN+  KHTGPG+LSMAN+G      Q+F     T 
Sbjct: 68  MCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTE 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV+G +VVK +EKVGS  GRT++ VV+EDCGQ+
Sbjct: 128 WLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQL 171

[Close]

BLAST of Carg16479 vs. Swiss-Prot
Match: sp|P24525|CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus OX=3708 GN=CYP PE=2 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 6.6e-34
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFT GNGTGGESIYGMKF DEN+  KHTGPG+LSM N+G      Q+F     TS
Sbjct: 68  MCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFG+VV+G +VV+++EKVGSD GRTS+ VV  DCGQ+
Sbjct: 128 WLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171

[Close]

BLAST of Carg16479 vs. Swiss-Prot
Match: sp|Q8W171|CYP1_SOYBN (Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max OX=3847 GN=Cyp1 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.7e-34
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSG---QKHQWF----STS 60
           MCQGGDFT GNGTGGESIYG KFADEN+  KHTGPG+LSMAN+G      Q+F     T 
Sbjct: 68  MCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTEKTE 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQ 97
           WLDGKHVVFG+V++G NVVK++EKVGS  GRTS+ VVI +CGQ
Sbjct: 128 WLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKPVVIANCGQ 170

[Close]

BLAST of Carg16479 vs. TrEMBL
Match: tr|A0A166JH20|A0A166JH20_PANGI (Peptidyl-prolyl cis-trans isomerase OS=Panax ginseng OX=4054 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.9e-40
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+ +KHTGPG+LSMAN+G+     Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGQKFADENFNVKHTGPGILSMANAGRNTNGSQFFLCTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQID 99
           WLDGKHVVFGKVVDGY+VVKEMEKVGSDGG+TS TVVIEDCGQID
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSDGGQTSSTVVIEDCGQID 172

[Close]

BLAST of Carg16479 vs. TrEMBL
Match: tr|A0A200PW43|A0A200PW43_9MAGN (Peptidyl-prolyl cis-trans isomerase OS=Macleaya cordata OX=56857 GN=BVC80_9099g263 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYGMKF DEN+KMKHTGPG+LSMAN+G      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGMKFEDENFKMKHTGPGILSMANAGPNTNGSQFFICTDKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY++VKEMEKVGSDGG TS TVVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYSIVKEMEKVGSDGGTTSSTVVIEDCGEV 171

[Close]

BLAST of Carg16479 vs. TrEMBL
Match: tr|A0A2U1PIC6|A0A2U1PIC6_ARTAN (Cyclophilin OS=Artemisia annua OX=35608 GN=CTI12_AA149890 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+K+KHTGPG+LSMANSG      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGAKFADENFKIKHTGPGILSMANSGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY+VVKEMEKVGSDGGRTS  VVIEDCG++
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSDGGRTSSEVVIEDCGEV 171

[Close]

BLAST of Carg16479 vs. TrEMBL
Match: tr|A0A2R6QAT6|A0A2R6QAT6_ACTCH (Peptidyl-prolyl cis-trans isomerase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20868 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYG KFADEN+KMKHTGPG+LSMAN+G      Q+F     TS
Sbjct: 68  MCQGGDFTRGNGTGGESIYGQKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTEKTS 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY+VVKEMEKVGS+GG TS TVVIEDCGQI
Sbjct: 128 WLDGKHVVFGKVVDGYSVVKEMEKVGSNGGTTSATVVIEDCGQI 171

[Close]

BLAST of Carg16479 vs. TrEMBL
Match: tr|V4VS87|V4VS87_9ROSI (Peptidyl-prolyl cis-trans isomerase OS=Citrus clementina OX=85681 GN=CICLE_v10022535mg PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-39
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MCQGGDFTRGNGTGGESIYGMKFADENYKMKHTGPGVLSMANSGQK---HQWF----STS 60
           MCQGGDFTRGNGTGGESIYGMKFADEN+KMKHTGPG+LSMAN+G      Q+F     T 
Sbjct: 68  MCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTP 127

Query: 61  WLDGKHVVFGKVVDGYNVVKEMEKVGSDGGRTSETVVIEDCGQI 98
           WLDGKHVVFGKVVDGY+V+K+MEKVGS+ GRTS+TVVIEDCGQ+
Sbjct: 128 WLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171

The following BLAST results are available for this feature:

BLAST of Carg16479 vs. NCBI nr


Match Name	E-value	Identity	Description
ANA12002.1	1.2e-39	80.00	cyclophilin [Panax ginseng]	[more]
OVA02441.1	5.9e-39	78.85	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain [Macleaya cordata]	[more]
XP_022156642.1	7.7e-39	78.85	peptidyl-prolyl cis-trans isomerase CYP19-3 [Momordica charantia]	[more]
PSS05006.1	7.7e-39	80.77	Peptidyl-prolyl cis-trans isomerase [Actinidia chinensis var. chinensis]	[more]
PWA85506.1	7.7e-39	79.81	cyclophilin [Artemisia annua]	[more]

BLAST of Carg16479 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56070.1	1.9e-39	75.96	rotamase cyclophilin 2	[more]
AT2G16600.1	1.5e-36	71.15	rotamase CYP 3	[more]
AT2G21130.1	4.1e-34	64.15	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]
AT4G38740.1	1.5e-33	64.42	rotamase CYP 1	[more]
AT4G34870.1	3.4e-33	67.31	rotamase cyclophilin 5	[more]

BLAST of Carg16479 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38867\|CP19C_ARATH	3.4e-38	75.96	Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q38900\|CP19A_ARATH	2.7e-35	71.15	Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q39613\|CYPH_CATRO	3.9e-34	68.27	Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus OX=4058 GN=PCKR1 PE=1...	[more]
sp\|P24525\|CYPH_BRANA	6.6e-34	68.27	Peptidyl-prolyl cis-trans isomerase OS=Brassica napus OX=3708 GN=CYP PE=2 SV=2	[more]
sp\|Q8W171\|CYP1_SOYBN	8.7e-34	68.93	Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max OX=3847 GN=Cyp1 PE=2 SV=1	[more]

BLAST of Carg16479 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A166JH20\|A0A166JH20_PANGI	7.9e-40	80.00	Peptidyl-prolyl cis-trans isomerase OS=Panax ginseng OX=4054 PE=2 SV=1	[more]
tr\|A0A200PW43\|A0A200PW43_9MAGN	3.9e-39	78.85	Peptidyl-prolyl cis-trans isomerase OS=Macleaya cordata OX=56857 GN=BVC80_9099g2...	[more]
tr\|A0A2U1PIC6\|A0A2U1PIC6_ARTAN	5.1e-39	79.81	Cyclophilin OS=Artemisia annua OX=35608 GN=CTI12_AA149890 PE=4 SV=1	[more]
tr\|A0A2R6QAT6\|A0A2R6QAT6_ACTCH	5.1e-39	80.77	Peptidyl-prolyl cis-trans isomerase OS=Actinidia chinensis var. chinensis OX=159...	[more]
tr\|V4VS87\|V4VS87_9ROSI	8.7e-39	77.88	Peptidyl-prolyl cis-trans isomerase OS=Citrus clementina OX=85681 GN=CICLE_v1002...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000413	protein peptidyl-prolyl isomerization

Vocabulary: **Molecular Function**
Term	Definition
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR024936	Cyclophilin-type_PPIase
IPR002130	Cyclophilin-type_PPIase_dom
IPR029000	Cyclophilin-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16479-RA	Carg16479-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029000	Cyclophilin-like domain superfamily	GENE3D	G3DSA:2.40.100.10		coord: 1..98 e-value: 1.9E-38 score: 133.9
IPR029000	Cyclophilin-like domain superfamily	SUPERFAMILY	SSF50891	Cyclophilin-like	coord: 1..97
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00160	Pro_isomerase	coord: 1..95 e-value: 1.0E-18 score: 68.0
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PROSITE	PS50072	CSA_PPIASE_2	coord: 1..96 score: 20.622
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 1..97
None	No IPR available	PANTHER	PTHR11071:SF403	SUBFAMILY NOT NAMED	coord: 1..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16479	CmoCh11G010000	Cucurbita moschata (Rifu)	carcmoB1222
Carg16479	Cp4.1LG04g01980	Cucurbita pepo (Zucchini)	carcpeB1261
Carg16479	Bhi02G001030	Wax gourd	carwgoB1057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16479	Wax gourd	carwgoB1056
Carg16479	Cucumber (Gy14) v2	carcgybB0899
Carg16479	Cucumber (Gy14) v1	carcgyB1031
Carg16479	Cucurbita maxima (Rimu)	carcmaB1251
Carg16479	Cucurbita maxima (Rimu)	carcmaB1252
Carg16479	Cucurbita moschata (Rifu)	carcmoB1221
Carg16479	Cucurbita pepo (Zucchini)	carcpeB1262
Carg16479	Wild cucumber (PI 183967)	carcpiB0948
Carg16479	Cucumber (Chinese Long) v2	carcuB0927
Carg16479	Cucumber (Chinese Long) v3	carcucB0949
Carg16479	Bottle gourd (USVL1VR-Ls)	carlsiB830
Carg16479	Melon (DHL92) v3.5.1	carmeB0896
Carg16479	Melon (DHL92) v3.6.1	carmedB0904
Carg16479	Watermelon (Charleston Gray)	carwcgB0893
Carg16479	Watermelon (97103) v2	carwmbB0958