Cp4.1LG04g00980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Envelope glycoprotein
Location	Cp4.1LG04 : 1103472 .. 1104961 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTACGCCCGCTAAAAATTTTATACTTAATAACTTCATAGAGTTTAATATAAATAAGCAGAGAAAATTTTCCCGTTATAAAGTCAGTTCCCAAGGCGGTGTGTAGGGAAAAACCTGCGTTCCGCCTACTCCCGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGTATTTTTACTTCAAATTCTGCAATTTCATTCAGTCGTTGACGTGCTGGAATTTCTTTGCGATCTGTTGATTTACTGTATTTGAACTTTTTCGGATCTTGAAAATACTTGATTTGCTTTCATTTTTCATCGGTCGTACTTTATTTTACTCTAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTTTTATTCGCCGTTTCTCTATATAAACTGTTCTTATGATTATGTGCATATCCTTGGGCGATACGGAGAGGATTTTTGTTCGTATGATTTCGGATCTTGTTTTGTTAACTCTCTGTTGTGTTCTCGTTGTTCTGCAACACTTCTATCAGGAAATTTTGCACTATTGTTTCTCTTTCCCAGTTTTATCTCTTAAAGGAAGTGGAAGAAGTTCGGCAATGGTCTTCTTACCTGCATAGACTATGCAATGTGCTTTGAACTTCGATTGCCTTGAACTCTCAACCCTGGTCTGAGAACGATTTTGTTCTCATCTTTTTGTTTTTGAAAAAAGTAAAATAGTTCATGTTTACTAATAACTTCTTTGTTTAGTTTCTTATTAGAAGAATTCTTTTGAGTTTTGAGATGTTCGCCCAATTTCAAAAACCAAAATCATAAGTATGTCCAGAAAGAGTCCATATACGCTTATGCATAAAACATGGAGAACTAAAAGCAAAATTGACTCTGTTATGAAATACACTAAGATAAATGATAATCCATAACTTTCATCTTGAATGGTCATCCATACTCATAAATATCTTGTATAGCATGATTTCATATCCTAACTTCATCATTATACCTTATCTTATAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAAACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAATTATATAGACAACTGCTTCTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGGATATGCTGAGAGTTATTGTTTTGAGAAATTGAATTGTTATTAGGCATCTCTTTGTTGCTATGGATTTTGTTCAATAACATGCATGCAATTT

mRNA sequence

TAATTACGCCCGCTAAAAATTTTATACTTAATAACTTCATAGAGTTTAATATAAATAAGCAGAGAAAATTTTCCCGTTATAAAGTCAGTTCCCAAGGCGGTGTGTAGGGAAAAACCTGCGTTCCGCCTACTCCCGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAAACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAATTATATAGACAACTGCTTCTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGGATATGCTGAGAGTTATTGTTTTGAGAAATTGAATTGTTATTAGGCATCTCTTTGTTGCTATGGATTTTGTTCAATAACATGCATGCAATTT

Coding sequence (CDS)

ATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGA

Protein sequence

MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

Homology

[Close]

BLAST of Cp4.1LG04g00980 vs. TrEMBL
Match: A0A0A0K7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-27
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMP-DSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  SRSM GRT++L  KTLNP+P  SSSS+   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980 vs. TrEMBL
Match: A0A061E051_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 1   MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
           MAS CRS + A GSRS+A R++TL  K+L P P SS     S++     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

[Close]

BLAST of Cp4.1LG04g00980 vs. TrEMBL
Match: B9HRN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.3e-18
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSS-----SKGLTSVSRIVSSLATVE 60
          MAS CRS +TAT SRS+A R++T+ +KTLN    SS      ++ + + SR VS L +VE
Sbjct: 1  MASFCRSAITAT-SRSLASRSKTVTQKTLNAKSMSSPFTSTPTRTILASSRAVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLH+A+A+ARLKS IAVDS CWSWLS G ATPL
Sbjct: 61 SLMPLHNAIANARLKSSIAVDSSCWSWLSRGLATPL 95

[Close]

BLAST of Cp4.1LG04g00980 vs. TrEMBL
Match: V4LRH2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSS------KGLTSVSRIVSSLATV 60
          MAS CRS L A GSR++  R++ + +K+LN  P S+SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALVA-GSRNLVSRSKIVTQKSLNLKPASTSSPFASPSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWSWLS+GFATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSWLSQGFATPL 96

[Close]

BLAST of Cp4.1LG04g00980 vs. TrEMBL
Match: W9S627_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-17
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS----SSKGLTSVSRIVSSLATVES 60
          MAS CRS L A GSRS+A R++ +  K+LN +P SS    +S  +   SRI+S+L +VES
Sbjct: 1  MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSASGSIPRASRIISALGSVES 60

Query: 61 LMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LMPLHSA+ASARLKS IAVDS CWS+L +G A+PL
Sbjct: 61 LMPLHSAIASARLKSNIAVDSTCWSYLCQGLASPL 94

[Close]

BLAST of Cp4.1LG04g00980 vs. TAIR10
Match: AT4G39300.1 (AT4G39300.1 unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-19
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSS------KGLTSVSRIVSSLATV 60
          MAS CRS L A GSR++  R+RT+ +K+LN  P ++SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALMA-GSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWS LS+G ATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

[Close]

BLAST of Cp4.1LG04g00980 vs. NCBI nr
Match: gi|778726233|ref|XP_011659076.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 9.2e-27
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMP-DSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  SRSM GRT++L  KTLNP+P  SSSS+   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980 vs. NCBI nr
Match: gi|659092367|ref|XP_008447032.1| (PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATG-SRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA   SRSMAGRTR L  KTLNP+  SSSS+   S++RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980 vs. NCBI nr
Match: gi|802539228|ref|XP_012069996.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Jatropha curcas])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
          MAS CRS L A GSRS+A R+RTL +KTLN    SS     S++ + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLHSA+ASARLKS IAVDS CWSWLS+G ATPL
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQGLATPL 95

[Close]

BLAST of Cp4.1LG04g00980 vs. NCBI nr
Match: gi|802539232|ref|XP_012070015.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Jatropha curcas])

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-19
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
          MAS CRS L A GSRS+A R+RTL +KTLN    SS     S++ + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP 91
          SLMPLHSA+ASARLKS IAVDS CWSWLS+ FA P
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQDFAVP 94

[Close]

BLAST of Cp4.1LG04g00980 vs. NCBI nr
Match: gi|590685789|ref|XP_007042196.1| (Uncharacterized protein TCM_006891 [Theobroma cacao])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 1   MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
           MAS CRS + A GSRS+A R++TL  K+L P P SS     S++     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g00980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7P3_CUCSA	6.4e-27	77.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1	[more]
A0A061E051_THECC	1.4e-18	60.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1	[more]
B9HRN4_POPTR	9.3e-18	59.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1	[more]
V4LRH2_EUTSA	2.1e-17	54.64	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1	[more]
W9S627_9ROSA	4.6e-17	58.95	Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00980 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39300.1	3.4e-19	53.61	unknown protein	[more]

BLAST of Cp4.1LG04g00980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726233\|ref\|XP_011659076.1\|	9.2e-27	77.17	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|659092367\|ref\|XP_008447032.1\|	1.2e-26	78.26	PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo]	[more]
gi\|802539228\|ref\|XP_012069996.1\|	2.9e-20	64.58	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|802539232\|ref\|XP_012070015.1\|	5.4e-19	63.16	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|590685789\|ref\|XP_007042196.1\|	2.1e-18	60.42	Uncharacterized protein TCM_006891 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00980.1	Cp4.1LG04g00980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..91 score: 7.6
None	No IPR available	PANTHER	PTHR33156:SF4	SUBFAMILY NOT NAMED	coord: 1..91 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00980	Cucsa.240540	Cucumber (Gy14) v1	cgycpeB0645
Cp4.1LG04g00980	CmaCh11G010970	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g00980	CmaCh19G006650	Cucurbita maxima (Rimu)	cmacpeB540
Cp4.1LG04g00980	CmoCh19G006790	Cucurbita moschata (Rifu)	cmocpeB495
Cp4.1LG04g00980	CmoCh11G011230	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00980	Cla015925	Watermelon (97103) v1	cpewmB667
Cp4.1LG04g00980	Csa7G268490	Cucumber (Chinese Long) v2	cpecuB698
Cp4.1LG04g00980	MELO3C012523	Melon (DHL92) v3.5.1	cpemeB605
Cp4.1LG04g00980	ClCG02G005020	Watermelon (Charleston Gray)	cpewcgB591
Cp4.1LG04g00980	CSPI07G11620	Wild cucumber (PI 183967)	cpecpiB700
Cp4.1LG04g00980	Lsi11G011020	Bottle gourd (USVL1VR-Ls)	cpelsiB532
Cp4.1LG04g00980	MELO3C012523.2	Melon (DHL92) v3.6.1	cpemedB716
Cp4.1LG04g00980	CsaV3_7G023550	Cucumber (Chinese Long) v3	cpecucB0871
Cp4.1LG04g00980	Bhi05G001094	Wax gourd	cpewgoB0857
Cp4.1LG04g00980	CsGy7G010870	Cucumber (Gy14) v2	cgybcpeB972
Cp4.1LG04g00980	Carg19412	Silver-seed gourd	carcpeB0438
Cp4.1LG04g00980	Carg24685	Silver-seed gourd	carcpeB0254

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g00980	Cp4.1LG15g05340	Cucurbita pepo (Zucchini)	cpecpeB270

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g00980	Cucurbita pepo (Zucchini)	cpecpeB307
Cp4.1LG04g00980	Cucurbita pepo (Zucchini)	cpecpeB496
Cp4.1LG04g00980	Cucurbita moschata (Rifu)	cmocpeB591