Cp4.1LG04g00980.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00980.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Envelope glycoprotein
Location	Cp4.1LG04 : 1103472 .. 1104961 (+)
Sequence length	710

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTACGCCCGCTAAAAATTTTATACTTAATAACTTCATAGAGTTTAATATAAATAAGCAGAGAAAATTTTCCCGTTATAAAGTCAGTTCCCAAGGCGGTGTGTAGGGAAAAACCTGCGTTCCGCCTACTCCCGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGTATTTTTACTTCAAATTCTGCAATTTCATTCAGTCGTTGACGTGCTGGAATTTCTTTGCGATCTGTTGATTTACTGTATTTGAACTTTTTCGGATCTTGAAAATACTTGATTTGCTTTCATTTTTCATCGGTCGTACTTTATTTTACTCTAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTTTTATTCGCCGTTTCTCTATATAAACTGTTCTTATGATTATGTGCATATCCTTGGGCGATACGGAGAGGATTTTTGTTCGTATGATTTCGGATCTTGTTTTGTTAACTCTCTGTTGTGTTCTCGTTGTTCTGCAACACTTCTATCAGGAAATTTTGCACTATTGTTTCTCTTTCCCAGTTTTATCTCTTAAAGGAAGTGGAAGAAGTTCGGCAATGGTCTTCTTACCTGCATAGACTATGCAATGTGCTTTGAACTTCGATTGCCTTGAACTCTCAACCCTGGTCTGAGAACGATTTTGTTCTCATCTTTTTGTTTTTGAAAAAAGTAAAATAGTTCATGTTTACTAATAACTTCTTTGTTTAGTTTCTTATTAGAAGAATTCTTTTGAGTTTTGAGATGTTCGCCCAATTTCAAAAACCAAAATCATAAGTATGTCCAGAAAGAGTCCATATACGCTTATGCATAAAACATGGAGAACTAAAAGCAAAATTGACTCTGTTATGAAATACACTAAGATAAATGATAATCCATAACTTTCATCTTGAATGGTCATCCATACTCATAAATATCTTGTATAGCATGATTTCATATCCTAACTTCATCATTATACCTTATCTTATAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAAACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAATTATATAGACAACTGCTTCTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGGATATGCTGAGAGTTATTGTTTTGAGAAATTGAATTGTTATTAGGCATCTCTTTGTTGCTATGGATTTTGTTCAATAACATGCATGCAATTT

mRNA sequence

TAATTACGCCCGCTAAAAATTTTATACTTAATAACTTCATAGAGTTTAATATAAATAAGCAGAGAAAATTTTCCCGTTATAAAGTCAGTTCCCAAGGCGGTGTGTAGGGAAAAACCTGCGTTCCGCCTACTCCCGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAAACAAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAATTATATAGACAACTGCTTCTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGGATATGCTGAGAGTTATTGTTTTGAGAAATTGAATTGTTATTAGGCATCTCTTTGTTGCTATGGATTTTGTTCAATAACATGCATGCAATTT

Coding sequence (CDS)

ATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTTCAAGGTCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTAAATCCAATGCCGGATTCTTCTTCCTCCAAAGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGA

Protein sequence

MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

Homology

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL
Match: A0A0A0K7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-27
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMP-DSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  SRSM GRT++L  KTLNP+P  SSSS+   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL
Match: A0A061E051_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 1   MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
           MAS CRS + A GSRS+A R++TL  K+L P P SS     S++     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL
Match: B9HRN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.3e-18
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSS-----SKGLTSVSRIVSSLATVE 60
          MAS CRS +TAT SRS+A R++T+ +KTLN    SS      ++ + + SR VS L +VE
Sbjct: 1  MASFCRSAITAT-SRSLASRSKTVTQKTLNAKSMSSPFTSTPTRTILASSRAVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLH+A+A+ARLKS IAVDS CWSWLS G ATPL
Sbjct: 61 SLMPLHNAIANARLKSSIAVDSSCWSWLSRGLATPL 95

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL
Match: V4LRH2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSS------KGLTSVSRIVSSLATV 60
          MAS CRS L A GSR++  R++ + +K+LN  P S+SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALVA-GSRNLVSRSKIVTQKSLNLKPASTSSPFASPSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWSWLS+GFATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSWLSQGFATPL 96

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL
Match: W9S627_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-17
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS----SSKGLTSVSRIVSSLATVES 60
          MAS CRS L A GSRS+A R++ +  K+LN +P SS    +S  +   SRI+S+L +VES
Sbjct: 1  MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSASGSIPRASRIISALGSVES 60

Query: 61 LMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LMPLHSA+ASARLKS IAVDS CWS+L +G A+PL
Sbjct: 61 LMPLHSAIASARLKSNIAVDSTCWSYLCQGLASPL 94

[Close]

BLAST of Cp4.1LG04g00980.1 vs. TAIR10
Match: AT4G39300.1 (AT4G39300.1 unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-19
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSS------KGLTSVSRIVSSLATV 60
          MAS CRS L A GSR++  R+RT+ +K+LN  P ++SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALMA-GSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWS LS+G ATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

[Close]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr
Match: gi|778726233|ref|XP_011659076.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 9.2e-27
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMP-DSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  SRSM GRT++L  KTLNP+P  SSSS+   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr
Match: gi|659092367|ref|XP_008447032.1| (PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 1


Query: 1  MASVCRSVLTATG-SRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA   SRSMAGRTR L  KTLNP+  SSSS+   S++RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr
Match: gi|802539228|ref|XP_012069996.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Jatropha curcas])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
          MAS CRS L A GSRS+A R+RTL +KTLN    SS     S++ + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLHSA+ASARLKS IAVDS CWSWLS+G ATPL
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQGLATPL 95

[Close]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr
Match: gi|802539232|ref|XP_012070015.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Jatropha curcas])

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-19
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
          MAS CRS L A GSRS+A R+RTL +KTLN    SS     S++ + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP 91
          SLMPLHSA+ASARLKS IAVDS CWSWLS+ FA P
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQDFAVP 94

[Close]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr
Match: gi|590685789|ref|XP_007042196.1| (Uncharacterized protein TCM_006891 [Theobroma cacao])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 1   MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSS-----SSKGLTSVSRIVSSLATVE 60
           MAS CRS + A GSRS+A R++TL  K+L P P SS     S++     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g00980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7P3_CUCSA	6.4e-27	77.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1	[more]
A0A061E051_THECC	1.4e-18	60.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1	[more]
B9HRN4_POPTR	9.3e-18	59.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1	[more]
V4LRH2_EUTSA	2.1e-17	54.64	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1	[more]
W9S627_9ROSA	4.6e-17	58.95	Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39300.1	3.4e-19	53.61	unknown protein	[more]

BLAST of Cp4.1LG04g00980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726233\|ref\|XP_011659076.1\|	9.2e-27	77.17	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|659092367\|ref\|XP_008447032.1\|	1.2e-26	78.26	PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo]	[more]
gi\|802539228\|ref\|XP_012069996.1\|	2.9e-20	64.58	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|802539232\|ref\|XP_012070015.1\|	5.4e-19	63.16	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|590685789\|ref\|XP_007042196.1\|	2.1e-18	60.42	Uncharacterized protein TCM_006891 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g00980	Cp4.1LG04g00980	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00980.1:five_prime_utr:001	Cp4.1LG04g00980.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00980.1:cds:003	Cp4.1LG04g00980.1:cds:003	CDS
Cp4.1LG04g00980.1:cds:002	Cp4.1LG04g00980.1:cds:002	CDS
Cp4.1LG04g00980.1:cds:001	Cp4.1LG04g00980.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00980.1:three_prime_utr:001	Cp4.1LG04g00980.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00980.1	Cp4.1LG04g00980.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..91 score: 7.6
None	No IPR available	PANTHER	PTHR33156:SF4	SUBFAMILY NOT NAMED	coord: 1..91 score: 7.6