Cla015925 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015925
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 5077747 .. 5080142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGGTCAAAGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGTACTTTCACTTCAAATTTTGTAGGGTCATTTAGTCCTTTACGTGCCGGAATTTCTTTGCGATCTCAGTTAATTTTTACTGTTTTTGGACTTTTTGGGATCCTGATTATACTTGATTTGCTTCCATTTTCATTGCTTGTCCTTCGTTTCTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTATCCATTACTTTATTTACGTTGTTCTTATGAATGTGAGCATTTTTATCTGCAATATGGAGAGGGTTTTGTGTTCATTTGATTTGGGATTTTGCTTTGTTAATACATCCATTTCCTTGTTCTCTGTTGGATTCTTGATGCACTGCAAAATTTCTAGTAGGCATTCCTTTGAATTTGATTCTATTTTCCTAAAGTTTATCTCTCAACCTCTATATTTGATGGAAAATGAAGTATAAGAAGTTGGGAAATGAACTTCTTGTATCCGTAGGATACATAATAGGCTTTGAATTTGATTGCCTTCAACTCTTAACGCATTTTTTATTGGTCTCCTTTCCATTCTAAGTTCAGCCTGGTCAGAGACGATTTTGTTTTTGAAAAATGTTACCTTACTAGCTTATTTATTTAGTTTCTTACTTAACAGAAGAAAATCCTTTCGAAATTTCGGTGTGTTCTAGAAATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGTTCAAGGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGTACTTTCACTTCAAATTTTGTAGGGTCATTTAGTCCTTTACGTGCCGGAATTTCTTTGCGATCTCAGTTAATTTTTACTGTTTTTGGACTTTTTGGGATCCTGATTATACTTGATTTGCTTCCATTTTCATTGCTTGTCCTTCGTTTCTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTATCCATTACTTTATTTACGTTGTTCTTATGAATGTGAGCATTTTTATCTGCAATATGGAGAGGGTTTTGTGTTCATTTGATTTGGGATTTTGCTTTGTTAATACATCCATTTCCTTGTTCTCTGTTGGATTCTTGATGCACTGCAAAATTTCTAGTAGGCATTCCTTTGAATTTGATTCTATTTTCCTAAAGTTTATCTCTCAACCTCTATATTTGATGGAAAATGAAGTATAAGAAGTTGGGAAATGAACTTCTTGTATCCGTAGGATACATAATAGGCTTTGAATTTGATTGCCTTCAACTCTTAACGCATTTTTTATTGGTCTCCTTTCCATTCTAAGTTCAGCCTGGTCAGAGACGATTTTGTTTTTGAAAAATGTTACCTTACTAGCTTATTTATTTAGTTTCTTACTTAACAGAAGAAAATCCTTTCGAAATTTTGGCCAATTTTCAAATACCAAAATCATAAGAATTACCAAGAAAGAGTTCATACAAGCTTATGTATAAAAAGATGGAAAATGGAAAATAAAATTCTTACCAAATTTGACCAATTATTCATTTTTTCTGATAAGAAACAGCGGACCATATTACCGAAGGGCGGAGTGGCAAGGTGCCAGACCCCAAAAACAACATCATTAATGCCTTTGCCCCCCAATTGTGGAGGTTTTGGTTGAAGTTATAGTTACAAAAGAAAACATTGTGTTTAAGAGTCCAAGAAGACGAAGTAATTTGTACAAGGTTACAAAATCAACAAAAGAGTCAGACTTATCTTCAAAGATCCTTCTATTCCTTTCTTTCCAAAGCTCCCACATCAGAGTTCGGGCTGCACGACCCCACAAAATCTTTGTTTTGTCTTAATTGACCCATTAGTTATATGCTAACATTGCATCTTTTGTGTATGTACTCTTTGGGTTATGAATTGCATTCAAAAAATGACAATCACTAACTCTCATCTTGAATGGTCAATCATATGTCTCTTGCATATCCTATTGAGTTCAGTTCCTAACTTCATCCTTCTACCTTATCTTTTAGGATTTGCAACACCTTTGTGACACAACGGTTGGTGAGGACGTAATTGATAATACAGCTGAATGA

mRNA sequence

ATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGGTCAAAGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGAAATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGTTCAAGGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTATCCATTACTTTATTTACGTTGTTCTTATGAATGATTTGCAACACCTTTGTGACACAACGGTTGGTGAGGACGTAATTGATAATACAGCTGAATGA

Coding sequence (CDS)

ATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGGTCAAAGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGAAATGGCTGCCGTTTGCCGATCACTTCTAACGGCGGCGGGTTCAAGGTCCATGGCCGGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCGTCCTCCAGAGGCATCCCTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGCGCCGTCGCCTCAGCTCGGCTGAAGTCTAAAATTGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTATCCATTACTTTATTTACGTTGTTCTTATGAATGATTTGCAACACCTTTGTGACACAACGGTTGGTGAGGACGTAATTGATAATACAGCTGAATGA

Protein sequence

MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSSSSRGIPSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEEMAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSSSSRGIPSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGCFIIHYFIYVVLMNDLQHLCDTTVGEDVIDNTAE

Homology

[Close]

BLAST of Cla015925 vs. Swiss-Prot
Match: NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-07
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1


Query: 92  RSLLTAAGSRSMAGRTRTLAHKTLN-PMLVSSSSRGIPSVSRI---VSSLATVESLMPLH 151
           RS+L AA SRS A  T   A +  + P L  +++R  P +S +   V     VESL+P H
Sbjct: 11  RSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYH 70

Query: 152 SAVASARLKSKIAVDSHCWSWLSEGC 174
           SA ASA + SK+++    + WLS+ C
Sbjct: 71  SATASALMTSKLSISGQTYGWLSDAC 96

HSP 2 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 1


Query: 6  RSLLTAAGSKSMAGRTRTLAHKTLN-PMLVSSSSRGIPSVSRI---VSSLATVESLMPLH 65
          RS+L AA S+S A  T   A +  + P L  +++R  P +S +   V     VESL+P H
Sbjct: 11 RSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYH 70

Query: 66 SAVASARLKSKIAVDSHCWSWLSE 86
          SA ASA + SK+++    + WLS+
Sbjct: 71 SATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Cla015925 vs. TrEMBL
Match: A0A0A0K7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSSSS-RGIPSVSRIVSSLATVESLMP 146
           MA+V RSLLTAA SRSM GRT++LAHKTLNP+ VSSSS R  PS +RIVSSLA VESLMP
Sbjct: 1   MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 147 LHSAVASARLKSKIAVDSHCWSWLSEG 173
           LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61  LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of Cla015925 vs. TrEMBL
Match: A0A0A0K7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSSSS-RGIPSVSRIVSSLATVESLMP 60
          MA+V RSLLTAA S+SM GRT++LAHKTLNP+ VSSSS R  PS +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEEMA 89
          LH+AVASARLKSKIAVDSHCWSWLSE  A
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFA 89

HSP 2 Score: 102.8 bits (255), Expect = 5.0e-19
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 85  EEMAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLAT 144
           EEMA+ CRS + A GSRS+A R++TL  K+L P  +SS     S+R  P  SRI+S L  
Sbjct: 100 EEMASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGG 159

Query: 145 VESLMPLHSAVASARLKSKIAVDSHCWSWLSEG 173
           VES+MPLHSA+ASARL+S IAVDS CWSWLS+G
Sbjct: 160 VESMMPLHSAIASARLQSSIAVDSSCWSWLSQG 191

[Close]

BLAST of Cla015925 vs. TrEMBL
Match: A0A061E051_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 1   MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLATVE 60
           MA+ CRS + A GS+S+A R++TL  K+L P  +SS     S+R  P  SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEEMA 89
           S+MPLHSA+ASARL+S IAVDS CWSWLS+ +A
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLA 193

HSP 2 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS----SSRGIPSVSRIVSSLATVES 146
           MA+ CRS L A GSRS+A R++ ++ K+LN + +SS    +S  IP  SRI+S+L +VES
Sbjct: 1   MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSASGSIPRASRIISALGSVES 60

Query: 147 LMPLHSAVASARLKSKIAVDSHCWSWLSEG 173
           LMPLHSA+ASARLKS IAVDS CWS+L +G
Sbjct: 61  LMPLHSAIASARLKSNIAVDSTCWSYLCQG 89

[Close]

BLAST of Cla015925 vs. TrEMBL
Match: W9S627_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.0e-17
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSS----SSRGIPSVSRIVSSLATVES 60
          MA+ CRS L A GS+S+A R++ ++ K+LN + +SS    +S  IP  SRI+S+L +VES
Sbjct: 1  MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSASGSIPRASRIISALGSVES 60

Query: 61 LMPLHSAVASARLKSKIAVDSHCWSWLSEEMAA 90
          LMPLHSA+ASARLKS IAVDS CWS+L + +A+
Sbjct: 61 LMPLHSAIASARLKSNIAVDSTCWSYLCQGLAS 92

HSP 2 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS----SSRGIPSVSRIVSSLATVES 146
           MA+ CRS L A GSRS+A R++ ++ K+LN + +SS     S  IP  SRI+S+L +VES
Sbjct: 1   MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSDSGAIPRASRIISALGSVES 60

Query: 147 LMPLHSAVASARLKSKIAVDSHCWSWLSEG 173
           LMPLHSA+ASARLKS IAVDS CWS LS+G
Sbjct: 61  LMPLHSAIASARLKSNIAVDSTCWSCLSQG 89

[Close]

BLAST of Cla015925 vs. TrEMBL
Match: W9R2Q6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018542 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSS----SSRGIPSVSRIVSSLATVES 60
          MA+ CRS L A GS+S+A R++ ++ K+LN + +SS     S  IP  SRI+S+L +VES
Sbjct: 1  MASFCRSALMA-GSRSIAARSKVVSPKSLNSIPISSPFSSDSGAIPRASRIISALGSVES 60

Query: 61 LMPLHSAVASARLKSKIAVDSHCWSWLSE 86
          LMPLHSA+ASARLKS IAVDS CWS LS+
Sbjct: 61 LMPLHSAIASARLKSNIAVDSTCWSCLSQ 88

HSP 2 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLN--PMLVSSSS------RGIPSVSRIVSSLA 146
           MA+VCRS L + GSR++  R+RT+  K +N  P   ++SS      + IP  SR++S+L 
Sbjct: 1   MASVCRSFLMS-GSRNLVSRSRTVTQKCINLKPTTTTTSSHFASVSQSIPRASRVLSALG 60

Query: 147 TVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGCFIIHYFI 181
           +VE+++PLHSAVASARL+S IAVDS CWSWLS G  ++ +FI
Sbjct: 61  SVETMIPLHSAVASARLRSSIAVDSSCWSWLSLGETVLKFFI 101

[Close]

BLAST of Cla015925 vs. NCBI nr
Match: gi|659092367|ref|XP_008447032.1| (PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1


Query: 87  MAAVCRSLLTAAG-SRSMAGRTRTLAHKTLNPMLVSSSSRGIPSVSRIVSSLATVESLMP 146
           MA+V RSLLTAA  SRSMAGRTR LAHKTLNP+LVSSSSR  PS++RIVSSLA VESLMP
Sbjct: 1   MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 147 LHSAVASARLKSKIAVDSHCWSWLSEG 173
           LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61  LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of Cla015925 vs. NCBI nr
Match: gi|659092367|ref|XP_008447032.1| (PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MAAVCRSLLTAAG-SKSMAGRTRTLAHKTLNPMLVSSSSRGIPSVSRIVSSLATVESLMP 60
          MA+V RSLLTAA  S+SMAGRTR LAHKTLNP+LVSSSSR  PS++RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEEMA 89
          LH+AVASARLKSKIAVDSHCWSWLSE  A
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFA 89

HSP 2 Score: 136.0 bits (341), Expect = 7.6e-29
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSSSS-RGIPSVSRIVSSLATVESLMP 146
           MA+V RSLLTAA SRSM GRT++LAHKTLNP+ VSSSS R  PS +RIVSSLA VESLMP
Sbjct: 1   MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 147 LHSAVASARLKSKIAVDSHCWSWLSEG 173
           LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61  LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of Cla015925 vs. NCBI nr
Match: gi|778726233|ref|XP_011659076.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 5.0e-28
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSSSS-RGIPSVSRIVSSLATVESLMP 60
          MA+V RSLLTAA S+SM GRT++LAHKTLNP+ VSSSS R  PS +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEEMA 89
          LH+AVASARLKSKIAVDSHCWSWLSE  A
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFA 89

HSP 2 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLATVE 146
           MA+ CRS L A GSRS+A R+RTL  KTLN    SS     S+R IP+ SR+VS L +VE
Sbjct: 1   MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 147 SLMPLHSAVASARLKSKIAVDSHCWSWLSEG 173
           SLMPLHSA+ASARLKS IAVDS CWSWLS+G
Sbjct: 61  SLMPLHSAIASARLKSSIAVDSSCWSWLSQG 90

[Close]

BLAST of Cla015925 vs. NCBI nr
Match: gi|802539228|ref|XP_012069996.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Jatropha curcas])

HSP 1 Score: 106.7 bits (265), Expect = 5.0e-20
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLATVE 60
          MA+ CRS L A GS+S+A R+RTL  KTLN    SS     S+R IP+ SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEEMA 89
          SLMPLHSA+ASARLKS IAVDS CWSWLS+ +A
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQGLA 92

HSP 2 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MAAVCRSLLTAAGSKSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLATVE 60
          MA+ CRS L A GS+S+A R+RTL  KTLN    SS     S+R IP+ SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEEMA 89
          SLMPLHSA+ASARLKS IAVDS CWSWLS++ A
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQDFA 92

[Close]

BLAST of Cla015925 vs. NCBI nr
Match: gi|802539232|ref|XP_012070015.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Jatropha curcas])

HSP 1 Score: 106.3 bits (264), Expect = 6.5e-20
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 87  MAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLATVE 146
           MA+ CRS L A GSRS+A R+RTL  KTLN    SS     S+R IP+ SR+VS L +VE
Sbjct: 1   MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 147 SLMPLHSAVASARLKSKIAVDSHCWSWLSE 172
           SLMPLHSA+ASARLKS IAVDS CWSWLS+
Sbjct: 61  SLMPLHSAIASARLKSSIAVDSSCWSWLSQ 89

HSP 2 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 85  EEMAAVCRSLLTAAGSRSMAGRTRTLAHKTLNPMLVSS-----SSRGIPSVSRIVSSLAT 144
           EEMA+ CRS + A GSRS+A R++TL  K+L P  +SS     S+R  P  SRI+S L  
Sbjct: 100 EEMASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGG 159

Query: 145 VESLMPLHSAVASARLKSKIAVDSHCWSWLSEG 173
           VES+MPLHSA+ASARL+S IAVDS CWSWLS+G
Sbjct: 160 VESMMPLHSAIASARLQSSIAVDSSCWSWLSQG 191

The following BLAST results are available for this feature:

BLAST of Cla015925 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFD6_ARATH	8.2e-07	39.53	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of Cla015925 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7P3_CUCSA	5.3e-29	82.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1	[more]
A0A0A0K7P3_CUCSA	3.5e-28	79.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1	[more]
A0A061E051_THECC	2.7e-17	56.99	Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1	[more]
W9S627_9ROSA	8.0e-17	55.91	Uncharacterized protein OS=Morus notabilis GN=L484_027437 PE=4 SV=1	[more]
W9R2Q6_9ROSA	3.0e-16	58.43	Uncharacterized protein OS=Morus notabilis GN=L484_018542 PE=4 SV=1	[more]

BLAST of Cla015925 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092367\|ref\|XP_008447032.1\|	4.8e-31	86.21	PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo]	[more]
gi\|659092367\|ref\|XP_008447032.1\|	3.1e-30	83.15	PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo]	[more]
gi\|778726233\|ref\|XP_011659076.1\|	5.0e-28	79.78	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|802539228\|ref\|XP_012069996.1\|	5.0e-20	63.44	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|802539232\|ref\|XP_012070015.1\|	6.5e-20	65.56	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000741	karyogamy
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0010197	polar nucleus fusion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU16124	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU52511	watermelon EST collection version 2.0	transcribed_cluster
WMU67139	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015925	Cla015925.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU16124	WMU16124	transcribed_cluster
WMU67139	WMU67139	transcribed_cluster
WMU52511	WMU52511	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 87..186 score: 1.3
None	No IPR available	PANTHER	PTHR33156:SF4	SUBFAMILY NOT NAMED	coord: 87..186 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015925	Cla97C02G031990	Watermelon (97103) v2	wmwmbB317
Cla015925	Csa7G268490	Cucumber (Chinese Long) v2	cuwmB606
Cla015925	MELO3C012523	Melon (DHL92) v3.5.1	mewmB239
Cla015925	ClCG02G005020	Watermelon (Charleston Gray)	wcgwmB198
Cla015925	CSPI07G11620	Wild cucumber (PI 183967)	cpiwmB625
Cla015925	Cucsa.240540	Cucumber (Gy14) v1	cgywmB459
Cla015925	CmaCh19G006650	Cucurbita maxima (Rimu)	cmawmB503
Cla015925	CmoCh19G006790	Cucurbita moschata (Rifu)	cmowmB496
Cla015925	CmoCh11G011230	Cucurbita moschata (Rifu)	cmowmB111
Cla015925	Lsi11G011020	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015925	Cp4.1LG15g05340	Cucurbita pepo (Zucchini)	cpewmB268
Cla015925	Cp4.1LG04g00980	Cucurbita pepo (Zucchini)	cpewmB667
Cla015925	CsGy7G010870	Cucumber (Gy14) v2	cgybwmB568
Cla015925	MELO3C012523.2	Melon (DHL92) v3.6.1	medwmB231
Cla015925	Carg24685	Silver-seed gourd	carwmB0165
Cla015925	Carg19412	Silver-seed gourd	carwmB0305
Cla015925	CsaV3_7G023550	Cucumber (Chinese Long) v3	cucwmB636
Cla015925	Bhi05G001094	Wax gourd	wgowmB280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015925	Watermelon (97103) v2	wmwmbB315
Cla015925	Wax gourd	wgowmB383
Cla015925	Watermelon (97103) v1	wmwmB160
Cla015925	Cucumber (Gy14) v1	cgywmB155
Cla015925	Cucurbita maxima (Rimu)	cmawmB123
Cla015925	Cucurbita maxima (Rimu)	cmawmB526
Cla015925	Cucurbita maxima (Rimu)	cmawmB586
Cla015925	Cucurbita moschata (Rifu)	cmowmB516
Cla015925	Cucurbita moschata (Rifu)	cmowmB580
Cla015925	Watermelon (Charleston Gray)	wcgwmB101
Cla015925	Cucumber (Chinese Long) v2	cuwmB149
Cla015925	Cucurbita pepo (Zucchini)	cpewmB304
Cla015925	Cucurbita pepo (Zucchini)	cpewmB748
Cla015925	Bottle gourd (USVL1VR-Ls)	lsiwmB079
Cla015925	Cucumber (Gy14) v2	cgybwmB141
Cla015925	Silver-seed gourd	carwmB0895
Cla015925	Cucumber (Chinese Long) v3	cucwmB160