CmoCh11G011230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 6333937 .. 6335225 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAGAAAAACCTGCGTTCCGCCTACTCCAGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTGCAAGGTTCGTGACCGGACGGACCAGAACACTCGTTCGCAAAACCTTAAATCCAATGCCTGGTTCTTCTTCCTCTAGGGGCCTCACTTCCGTTTCCAGGTACTTTTACTTCAAATTTTGCAATTTCATTCAGTCGTTTACGTGCTGGAATTTCTTTGCGATCTGTTAATTTACTGTATTTGAACTTTTTCGGATCTTGAAAATACTTGATTTGCTTCCATTTTTCATCGGTCGTACTCTATTTTACTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTTTTATTCGCCGTTTCTCTATATAAACTGTTCTTATGGTTATGTGCATATCCTTCGGCGATACGGAGAGGATTTTTGTTCGTATGATTTCGGATCTTGTTTTGTTAACTCTCTGTTATGTTCTCGTTGTCCTGCAACACTTCTATCAGGAAATTTTGCACTATTGTTGCTCTTTCCCAATTTTATCTCTTGAAGGAAGTGGAAGAAGTTCTGCAATGGCCTTCTTATCTGTACAGAATATGCAATGTGCTTTGAATTTTGATTGCCTTGAACTCTCAACCCTAGTCTGAGAACGATTTTGTTCTTATCTTTTTGTTTATGAAAAGTAAGATGGTTCGTGTTTACTAATAACTTCTTTGTTTAGTTTCTTATTAGAAGAATTCTTTTGAGTTTTGAGATGTTCGCCCAATTTCAAAAACCAAAATCATATGTCCAGAAAGAGTCCATATAAGCTTATGCATAAAACATGGAGAACTAAATGCAAAATTGACTCTGTTATGAAATACACTAAGATAAATGATAATCCATAACTTTCATCTTGAATGGTCATCCATACTCATAAATATCTTGTATAGCATGATTTCATATCCTAACTTCATCATTATACCTTATCTTATAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAGACAAATTTGAATCGACAATACAGTTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAACTGTCTAGACAACTGCTTTTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGG

mRNA sequence

TAGAGAAAAACCTGCGTTCCGCCTACTCCAGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTGCAAGGTTCGTGACCGGACGGACCAGAACACTCGTTCGCAAAACCTTAAATCCAATGCCTGGTTCTTCTTCCTCTAGGGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGACATAAAGACCGGGAAGACAAATTTGAATCGACAATACAGTTCAATGACTGGTAGCTGAGAGGACACCTTGTAAGACTTGCGAGGTTTTTCATCTTTCCTATTAATCTTTGTAAGATACCTTTAAAACAAGGAAGAACTGTCTAGACAACTGCTTTTAAGTTTTGATCATTGTTAATGCAACGCGGCCACCTTTTCTGG

Coding sequence (CDS)

ATGGCTTCCGTTTGCCGATCAGTTCTCACGGCGACGGGTGCAAGGTTCGTGACCGGACGGACCAGAACACTCGTTCGCAAAACCTTAAATCCAATGCCTGGTTCTTCTTCCTCTAGGGGCCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCAACACCTTTGTGA

Homology

[Close]

BLAST of CmoCh11G011230 vs. TrEMBL
Match: A0A0A0K7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-26
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  +R + GRT++L  KTLNP+P  SSSSR   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of CmoCh11G011230 vs. TrEMBL
Match: A0A061E051_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSS-----SSRGLTSVSRIVSSLATVE 60
           MAS CRS + A G+R +  R++TL  K+L P P SS     S+R     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

[Close]

BLAST of CmoCh11G011230 vs. TrEMBL
Match: V4LRH2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-17
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSS------RGLTSVSRIVSSLATV 60
          MAS CRS L A G+R +  R++ + +K+LN  P S+SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALVA-GSRNLVSRSKIVTQKSLNLKPASTSSPFASPSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWSWLS+GFATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSWLSQGFATPL 96

[Close]

BLAST of CmoCh11G011230 vs. TrEMBL
Match: B9HRN4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-17
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSS-----SRGLTSVSRIVSSLATVE 60
          MAS CRS +TAT +R +  R++T+ +KTLN    SS      +R + + SR VS L +VE
Sbjct: 1  MASFCRSAITAT-SRSLASRSKTVTQKTLNAKSMSSPFTSTPTRTILASSRAVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLH+A+A+ARLKS IAVDS CWSWLS G ATPL
Sbjct: 61 SLMPLHNAIANARLKSSIAVDSSCWSWLSRGLATPL 95

[Close]

BLAST of CmoCh11G011230 vs. TrEMBL
Match: B9H0R0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16220g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFV----TGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVES 60
          MAS CRS +TAT         T   +TL  K+++    S+ +R + + SRIVS L +VES
Sbjct: 1  MASFCRSAMTATTRSLASLSKTAGQKTLYAKSMSSPFTSTPTRTILATSRIVSVLGSVES 60

Query: 61 LMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LMPLHSA+A+ARLKS IAVDS CWSWLS+G ATPL
Sbjct: 61 LMPLHSAIANARLKSSIAVDSSCWSWLSQGLATPL 95

[Close]

BLAST of CmoCh11G011230 vs. TAIR10
Match: AT4G39300.1 (AT4G39300.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSS------RGLTSVSRIVSSLATV 60
          MAS CRS L A G+R +  R+RT+ +K+LN  P ++SS      + +   SR++S+L +V
Sbjct: 1  MASFCRSALMA-GSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          E+++PLHSAVASARL+S IA DS CWS LS+G ATPL
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96

[Close]

BLAST of CmoCh11G011230 vs. NCBI nr
Match: gi|778726233|ref|XP_011659076.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 6.0e-26
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMP-GSSSSRGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  +R + GRT++L  KTLNP+P  SSSSR   S +RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of CmoCh11G011230 vs. NCBI nr
Match: gi|659092367|ref|XP_008447032.1| (PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 1  MASVCRSVLTATGA-RFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMP 60
          MASV RS+LTA  A R + GRTR L  KTLNP+  SSSSR   S++RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          LH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEGFATSL 92

[Close]

BLAST of CmoCh11G011230 vs. NCBI nr
Match: gi|802539228|ref|XP_012069996.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Jatropha curcas])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSS-----SSRGLTSVSRIVSSLATVE 60
          MAS CRS L A G+R +  R+RTL +KTLN    SS     S+R + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
          SLMPLHSA+ASARLKS IAVDS CWSWLS+G ATPL
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQGLATPL 95

[Close]

BLAST of CmoCh11G011230 vs. NCBI nr
Match: gi|802539232|ref|XP_012070015.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Jatropha curcas])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSS-----SSRGLTSVSRIVSSLATVE 60
          MAS CRS L A G+R +  R+RTL +KTLN    SS     S+R + + SR+VS L +VE
Sbjct: 1  MASFCRSALMA-GSRSIAARSRTLTQKTLNSNSFSSPFSSQSTRAIPNASRVVSVLGSVE 60

Query: 61 SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP 91
          SLMPLHSA+ASARLKS IAVDS CWSWLS+ FA P
Sbjct: 61 SLMPLHSAIASARLKSSIAVDSSCWSWLSQDFAVP 94

[Close]

BLAST of CmoCh11G011230 vs. NCBI nr
Match: gi|590685789|ref|XP_007042196.1| (Uncharacterized protein TCM_006891 [Theobroma cacao])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSS-----SSRGLTSVSRIVSSLATVE 60
           MAS CRS + A G+R +  R++TL  K+L P P SS     S+R     SRI+S L  VE
Sbjct: 102 MASFCRSAVMA-GSRSLASRSKTLTLKSLTPKPMSSPFSSPSTRSFPCASRILSVLGGVE 161

Query: 61  SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL 92
           S+MPLHSA+ASARL+S IAVDS CWSWLS+G ATPL
Sbjct: 162 SMMPLHSAIASARLQSSIAVDSSCWSWLSQGLATPL 196

The following BLAST results are available for this feature:

BLAST of CmoCh11G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7P3_CUCSA	4.2e-26	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G268490 PE=4 SV=1	[more]
A0A061E051_THECC	1.2e-17	58.33	Uncharacterized protein OS=Theobroma cacao GN=TCM_006891 PE=4 SV=1	[more]
V4LRH2_EUTSA	4.6e-17	53.61	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026662mg PE=4 SV=1	[more]
B9HRN4_POPTR	7.9e-17	57.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11870g PE=4 SV=1	[more]
B9H0R0_POPTR	3.0e-16	55.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16220g PE=4 SV=1	[more]

BLAST of CmoCh11G011230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39300.1	1.7e-18	52.58	unknown protein	[more]

BLAST of CmoCh11G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726233\|ref\|XP_011659076.1\|	6.0e-26	75.00	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|659092367\|ref\|XP_008447032.1\|	1.0e-25	76.09	PREDICTED: uncharacterized protein LOC103489582 [Cucumis melo]	[more]
gi\|802539228\|ref\|XP_012069996.1\|	1.1e-19	62.50	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|802539232\|ref\|XP_012070015.1\|	1.6e-18	61.05	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|590685789\|ref\|XP_007042196.1\|	1.7e-17	58.33	Uncharacterized protein TCM_006891 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011230.1	CmoCh11G011230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..91 score: 6.1
None	No IPR available	PANTHER	PTHR33156:SF4	SUBFAMILY NOT NAMED	coord: 1..91 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G011230	Cucsa.240540	Cucumber (Gy14) v1	cgycmoB0673
CmoCh11G011230	CmaCh11G010970	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011230	CmaCh19G006650	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011230	Cla015925	Watermelon (97103) v1	cmowmB111
CmoCh11G011230	Csa7G268490	Cucumber (Chinese Long) v2	cmocuB141
CmoCh11G011230	MELO3C012523	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011230	ClCG02G005020	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011230	CSPI07G11620	Wild cucumber (PI 183967)	cmocpiB140
CmoCh11G011230	Lsi11G011020	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011230	Cp4.1LG15g05340	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011230	Cp4.1LG04g00980	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011230	MELO3C012523.2	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G011230	CsaV3_7G023550	Cucumber (Chinese Long) v3	cmocucB0163
CmoCh11G011230	Cla97C02G031990	Watermelon (97103) v2	cmowmbB089
CmoCh11G011230	Bhi05G001094	Wax gourd	cmowgoB0121
CmoCh11G011230	CsGy7G010870	Cucumber (Gy14) v2	cgybcmoB884
CmoCh11G011230	Carg19412	Silver-seed gourd	carcmoB0431
CmoCh11G011230	Carg24685	Silver-seed gourd	carcmoB0245

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G011230	CmoCh19G006790	Cucurbita moschata (Rifu)	cmocmoB111

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011230	Cucurbita moschata (Rifu)	cmocmoB120