Cp4.1LG03g16500 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g16500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 13279869 .. 13280312 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

mRNA sequence

ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

Coding sequence (CDS)

ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

Protein sequence

MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVGIWRGVVLGDEDDLRENDSGIGTRGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGEGYGNGVAEADLREGVIGRGGGGRRGDGH
BLAST of Cp4.1LG03g16500 vs. TrEMBL
Match: A0A0A0L8R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 93/141 (65.96%), Postives = 105/141 (74.47%), Query Frame = 1

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           ME VSTL HHPQHLR+LILTE D AD I S HGFI GE EFRVRVN+ LV+  + V+IV 
Sbjct: 51  MEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVA 110

Query: 61  IWRGVVLGDEDDLRENDSGIGT-RGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGE 120
           IW GVVL +E+DL END+G+G  R  G A E+AG G     ATADVE E+K GEEDEEGE
Sbjct: 111 IWSGVVLSNENDLGENDAGVGAGRRRGRAAEVAGTGC----ATADVESEEKGGEEDEEGE 170

Query: 121 GYGNGVAEADLREGVIGRGGG 141
            YGNGVAEAD  EG+ GR GG
Sbjct: 171 CYGNGVAEADPGEGISGRRGG 187

BLAST of Cp4.1LG03g16500 vs. TrEMBL
Match: A0A0Q3GED4_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 59/153 (38.56%), Postives = 74/153 (48.37%), Query Frame = 1

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIG-SGHGFIPGEGEFRVRVNDSLVEAKDAV--- 60
           +E V  LGH  QHL V +L EAD A  +G  G G  PGEG   VR +   VE        
Sbjct: 56  VEPVPALGHQTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGR 115

Query: 61  --IIVGIWRGVVLGDEDDLRENDSGIGTRGSGV--AVEIAGAGAGAGGATADVEGEKKSG 120
               VG+     LGDE+  R+ D  +   G G   A E+A A        A+V  E++ G
Sbjct: 116 GRRGVGVGGLGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGG 175

Query: 121 EEDEEGEGYGNGVAEADLREGVIGRGGGGRRGD 146
           +E EE E  G+GVAEA+   G  G  G G  GD
Sbjct: 176 KEHEEAERDGDGVAEAE--RGERGEDGSGGHGD 206

BLAST of Cp4.1LG03g16500 vs. NCBI nr
Match: gi|700201343|gb|KGN56476.1| (hypothetical protein Csa_3G121040 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 93/141 (65.96%), Postives = 105/141 (74.47%), Query Frame = 1

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           ME VSTL HHPQHLR+LILTE D AD I S HGFI GE EFRVRVN+ LV+  + V+IV 
Sbjct: 51  MEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVA 110

Query: 61  IWRGVVLGDEDDLRENDSGIGT-RGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGE 120
           IW GVVL +E+DL END+G+G  R  G A E+AG G     ATADVE E+K GEEDEEGE
Sbjct: 111 IWSGVVLSNENDLGENDAGVGAGRRRGRAAEVAGTGC----ATADVESEEKGGEEDEEGE 170

Query: 121 GYGNGVAEADLREGVIGRGGG 141
            YGNGVAEAD  EG+ GR GG
Sbjct: 171 CYGNGVAEADPGEGISGRRGG 187

BLAST of Cp4.1LG03g16500 vs. NCBI nr
Match: gi|944074132|gb|KQK09616.1| (hypothetical protein BRADI_2g49151 [Brachypodium distachyon])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 59/153 (38.56%), Postives = 74/153 (48.37%), Query Frame = 1

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIG-SGHGFIPGEGEFRVRVNDSLVEAKDAV--- 60
           +E V  LGH  QHL V +L EAD A  +G  G G  PGEG   VR +   VE        
Sbjct: 56  VEPVPALGHQTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGR 115

Query: 61  --IIVGIWRGVVLGDEDDLRENDSGIGTRGSGV--AVEIAGAGAGAGGATADVEGEKKSG 120
               VG+     LGDE+  R+ D  +   G G   A E+A A        A+V  E++ G
Sbjct: 116 GRRGVGVGGLGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGG 175

Query: 121 EEDEEGEGYGNGVAEADLREGVIGRGGGGRRGD 146
           +E EE E  G+GVAEA+   G  G  G G  GD
Sbjct: 176 KEHEEAERDGDGVAEAE--RGERGEDGSGGHGD 206

BLAST of Cp4.1LG03g16500 vs. NCBI nr
Match: gi|992273294|gb|KXG33318.1| (hypothetical protein SORBI_003G288400 [Sorghum bicolor])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 61/155 (39.35%), Postives = 77/155 (49.68%), Query Frame = 1

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           +EAV  LGHH QHL V +L EADGA  +        GEG+  V  +   VE        G
Sbjct: 58  VEAVPALGHHAQHLAVPVLAEADGAHGVRLRGP--AGEGDLGVGRDGGGVEPDGGAGRRG 117

Query: 61  IWRGV--VLG------DEDDLREND---SGIGTRGSGVAVEIAGAGAGAGGATADVEGEK 120
              GV  V+G      DE+  R+ D   +G G RG      +  A A A  A A+VE ++
Sbjct: 118 GGGGVGGVVGGLGPLRDEEHARDGDGEVAGAGGRGDRFTGPVVPAAAAAT-AEAEVESQQ 177

Query: 121 KSGEEDEEGEGYGNGVAEADLREGVIGRGGGGRRG 145
           + GE+DEE E  G+GVAEA   E    RG  G RG
Sbjct: 178 EGGEQDEEAERDGDGVAEAQAGE----RGEEGHRG 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8R4_CUCSA1.5e-3865.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1[more]
A0A0Q3GED4_BRADI4.5e-0638.56Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700201343|gb|KGN56476.1|2.2e-3865.96hypothetical protein Csa_3G121040 [Cucumis sativus][more]
gi|944074132|gb|KQK09616.1|6.5e-0638.56hypothetical protein BRADI_2g49151 [Brachypodium distachyon][more]
gi|992273294|gb|KXG33318.1|6.5e-0639.35hypothetical protein SORBI_003G288400 [Sorghum bicolor][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g16500.1Cp4.1LG03g16500.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g16500CmaCh14G020700Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g16500Csa3G121040Cucumber (Chinese Long) v2cpecuB609
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g16500Cp4.1LG08g01170Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g16500Melon (DHL92) v3.6.1cpemedB651
Cp4.1LG03g16500Melon (DHL92) v3.6.1cpemedB658
Cp4.1LG03g16500Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g16500Silver-seed gourdcarcpeB0691
Cp4.1LG03g16500Silver-seed gourdcarcpeB1379
Cp4.1LG03g16500Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g16500Cucumber (Chinese Long) v3cpecucB0774
Cp4.1LG03g16500Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG03g16500Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG03g16500Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG03g16500Cucumber (Gy14) v1cgycpeB0367
Cp4.1LG03g16500Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g16500Cucurbita maxima (Rimu)cmacpeB005
Cp4.1LG03g16500Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g16500Cucurbita maxima (Rimu)cmacpeB831
Cp4.1LG03g16500Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g16500Cucurbita moschata (Rifu)cmocpeB589
Cp4.1LG03g16500Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g16500Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g16500Wild cucumber (PI 183967)cpecpiB624
Cp4.1LG03g16500Wild cucumber (PI 183967)cpecpiB632
Cp4.1LG03g16500Cucumber (Chinese Long) v2cpecuB622
Cp4.1LG03g16500Bottle gourd (USVL1VR-Ls)cpelsiB483
Cp4.1LG03g16500Bottle gourd (USVL1VR-Ls)cpelsiB486
Cp4.1LG03g16500Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g16500Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g16500Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g16500Watermelon (97103) v1cpewmB616
Cp4.1LG03g16500Watermelon (97103) v1cpewmB612
Cp4.1LG03g16500Watermelon (97103) v1cpewmB613
Cp4.1LG03g16500Melon (DHL92) v3.5.1cpemeB554
Cp4.1LG03g16500Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g16500Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g16500Cucumber (Gy14) v2cgybcpeB678