Cp4.1LG08g01170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g01170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 3676695 .. 3677129 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTAATGTCTACACTCAGGCATCATCCTCAGCATCTCCGCCTCCTTATACTCACATAGGCAAATAGAACAAACGCAATTAGCCCCGGCCATGGATTTGTCCTTGGAGAAGGGGAATTTAGGGTAAGAGTTTATCACAGCCTGATCGAGGCCAACGACGCCGTTGTCATCGTCGCGATCTGGAGCGCCGTCGTCCTCGGCGACAAAAATGATTTGCGGGAGAATGATTCCGGCATCGGAGCGCGAAGGAGGCGGCCTGGAAGAAGAGAGACGGAGGTTGCGGGAGCGGGAGGCGCGGCAGCAGACGTAGAAGGCGAGAAGGAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAAACCAAGCTTAGCGAAGGAGTAATTGGAGGAAGAAGCGGTGGAAGAGGAGGACATTGA

mRNA sequence

ATGAAAGCAAATAGAACAAACGCAATTAGCCCCGGCCATGGATTTGTCCTTGGAGAAGGGGAATTTAGGGTAAGAGTTTATCACAGCCTGATCGAGGCCAACGACGCCGTTGTCATCGTCGCGATCTGGAGCGCCGTCGTCCTCGGCGACAAAAATGATTTGCGGGAGAATGATTCCGGCATCGGAGCGCGAAGGAGGCGGCCTGGAAGAAGAGAGACGGAGGTTGCGGGAGCGGGAGGCGCGGCAGCAGACGTAGAAGGCGAGAAGGAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAAACCAAGCTTAGCGAAGGAGTAATTGGAGGAAGAAGCGGTGGAAGAGGAGGACATTGA

Coding sequence (CDS)

ATGAAAGCAAATAGAACAAACGCAATTAGCCCCGGCCATGGATTTGTCCTTGGAGAAGGGGAATTTAGGGTAAGAGTTTATCACAGCCTGATCGAGGCCAACGACGCCGTTGTCATCGTCGCGATCTGGAGCGCCGTCGTCCTCGGCGACAAAAATGATTTGCGGGAGAATGATTCCGGCATCGGAGCGCGAAGGAGGCGGCCTGGAAGAAGAGAGACGGAGGTTGCGGGAGCGGGAGGCGCGGCAGCAGACGTAGAAGGCGAGAAGGAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAAACCAAGCTTAGCGAAGGAGTAATTGGAGGAAGAAGCGGTGGAAGAGGAGGACATTGA

Protein sequence

MKANRTNAISPGHGFVLGEGEFRVRVYHSLIEANDAVVIVAIWSAVVLGDKNDLRENDSGIGARRRRPGRRETEVAGAGGAAADVEGEKESGEEDEEGEGYGNGVAETKLSEGVIGGRSGGRGGH
Homology
[Close]
BLAST of Cp4.1LG08g01170 vs. TrEMBL
Match: A0A0A0L8R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1 

Query: 2   KANRTNAISPGHGFVLGEGEFRVRVYHSLIEANDAVVIVAIWSAVVLGDKNDLRENDSGI 61
           + +R + IS  HGF+ GE EFRVRV + L++ ++ VVIVAIWS VVL ++NDL END+G+
Sbjct: 71  ETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNENDLGENDAGV 130

Query: 62  GARRRRPGRRETEVAGAGGAAADVEGEKESGEEDEEGEGYGNGVAETKLSEGVIGGRSGG 121
           GA RRR   R  EVAG G A ADVE E++ GEEDEEGE YGNGVAE    EG+    SG 
Sbjct: 131 GAGRRR--GRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEGI----SGR 188

Query: 122 RGGH 126
           RGGH
Sbjct: 191 RGGH 188

[Close]
BLAST of Cp4.1LG08g01170 vs. NCBI nr
Match: gi|700201343|gb|KGN56476.1| (hypothetical protein Csa_3G121040 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-26
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1 

Query: 2   KANRTNAISPGHGFVLGEGEFRVRVYHSLIEANDAVVIVAIWSAVVLGDKNDLRENDSGI 61
           + +R + IS  HGF+ GE EFRVRV + L++ ++ VVIVAIWS VVL ++NDL END+G+
Sbjct: 71  ETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNENDLGENDAGV 130

Query: 62  GARRRRPGRRETEVAGAGGAAADVEGEKESGEEDEEGEGYGNGVAETKLSEGVIGGRSGG 121
           GA RRR   R  EVAG G A ADVE E++ GEEDEEGE YGNGVAE    EG+    SG 
Sbjct: 131 GAGRRR--GRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEGI----SGR 188

Query: 122 RGGH 126
           RGGH
Sbjct: 191 RGGH 188

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g01170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g01170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8R4_CUCSA4.4e-2658.87Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1[more]
BLAST of Cp4.1LG08g01170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g01170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201343|gb|KGN56476.1|6.3e-2658.87hypothetical protein Csa_3G121040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g01170.1Cp4.1LG08g01170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g01170CmaCh14G020700Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g01170Csa3G121040Cucumber (Chinese Long) v2cpecuB862
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g01170Cp4.1LG03g16500Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g01170Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g01170Melon (DHL92) v3.6.1cpemedB929
Cp4.1LG08g01170Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g01170Silver-seed gourdcarcpeB0693
Cp4.1LG08g01170Silver-seed gourdcarcpeB1380
Cp4.1LG08g01170Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g01170Cucumber (Chinese Long) v3cpecucB1071
Cp4.1LG08g01170Cucurbita pepo (Zucchini)cpecpeB254
Cp4.1LG08g01170Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g01170Cucurbita maxima (Rimu)cmacpeB016
Cp4.1LG08g01170Cucurbita maxima (Rimu)cmacpeB847
Cp4.1LG08g01170Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g01170Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g01170Wild cucumber (PI 183967)cpecpiB864
Cp4.1LG08g01170Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g01170Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g01170Watermelon (97103) v1cpewmB845
Cp4.1LG08g01170Melon (DHL92) v3.5.1cpemeB815