Csa3G121040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G121040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 7028834 .. 7030079 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAGCTTAAGCAGACAACAGTGAAAATGAAGAGGACCCTTGAGATGGGTCAATCCATCTTTTTTCGCTCAAAAAGTAAGGAAGAGAAATGGAAAAGTTCTTCTTGTCTCAAAATTTTCGAATAATTGAATCCAACACTATCAGATCTACACAAGAATATTGATTCATGACCACTCAGAAAATTGATCAAAAAGTAAATCGAAAATTTCATCTGTGGGTCGAACAGTTACTAGAACATTCAGAATAAGAAGAAGAAAAAAAAAAAAACTAAGGATCTAACCAAAGAATTTACAATTTCTTAAGACTAAAAACAGGCAAAAACAAACAGAGAAATATGAAAATCAAGAGAAGAGAAGTAAAAGAAGAACCTAATCGATGCAATACCAATGAATGAGTCATCTCCTTCTCCGATCCGCCATGTATTGAGAGAGTGGAACAACCTCTTGAAGAGGAGTAGAAAGCGGAGTTGGGAGTGGCGAATTCCGACAAACCGGACAAGAACCATTAAGCTTCAACCAAGCATCGATACAACAGAGATGGAAGTAGTGTCTACACTCAGGCATCATCCTCAACATCTCCGCATCCTTATACTCACAGAGACAGATAGAGCAGACACAATTAGCTCCAGCCATGGATTTATCTCTGGAGAAAGGGAATTTAGGGTAAGAGTTAATAACGGTCTGGTCAAGACCCACAACCCCGTTGTCATCGTCGCGATCTGGAGCGGCGTCGTCCTCAGCAACGAAAATGATCTGGGGGAGAATGATGCCGGCGTCGGAGCGGGAAGAAGGAGGGGGAGGGCGGCGGAGGTGGCGGGAACGGGATGCGCGACAGCAGACGTAGAAAGCGAGGAGAAGGGCGGAGAGGAGGACGAGGAAGGCGAGTGCTATGGCAATGGAGTAGCCGAGGCCGATCCTGGAGAAGGAATAAGTGGAAGAAGGGGAGGACATGGAGAATGAGAAGGATTTGGAAATGGTGAAAAAGAAGAAGGAATTTGAGTTGAAGCCATTAGTGATGAAGAAGAAGAGAGAAAGAAGAGAAAGGAAGGAAATTAGGGCAGATAACTTTTTGGGGGAAGGTGGGTGGGGATTGCAGACGGAGCATTTAATACACACTTCTTCTCTTCTTAACTCTAATCTTTAACCATTTTTTGCTTTTCTCTTCTCATTACTTCATTTTTAGGCCTTAATTATATTTTTTAATCCTCCAACTAAATTGAAATATTATAATTTTAACTTTGTGGTTT

mRNA sequence

ATGAATGAGTCATCTCCTTCTCCGATCCGCCATGTATTGAGAGAGTGGAACAACCTCTTGAAGAGGAGTAGAAAGCGGAGTTGGGAGTGGCGAATTCCGACAAACCGGACAAGAACCATTAAGCTTCAACCAAGCATCGATACAACAGAGATGGAAGTAGTGTCTACACTCAGGCATCATCCTCAACATCTCCGCATCCTTATACTCACAGAGACAGATAGAGCAGACACAATTAGCTCCAGCCATGGATTTATCTCTGGAGAAAGGGAATTTAGGGTAAGAGTTAATAACGGTCTGGTCAAGACCCACAACCCCGTTGTCATCGTCGCGATCTGGAGCGGCGTCGTCCTCAGCAACGAAAATGATCTGGGGGAGAATGATGCCGGCGTCGGAGCGGGAAGAAGGAGGGGGAGGGCGGCGGAGGTGGCGGGAACGGGATGCGCGACAGCAGACGTAGAAAGCGAGGAGAAGGGCGGAGAGGAGGACGAGGAAGGCGAGTGCTATGGCAATGGAGTAGCCGAGGCCGATCCTGGAGAAGGAATAAGTGGAAGAAGGGGAGGACATGGAGAATGA

Coding sequence (CDS)

ATGAATGAGTCATCTCCTTCTCCGATCCGCCATGTATTGAGAGAGTGGAACAACCTCTTGAAGAGGAGTAGAAAGCGGAGTTGGGAGTGGCGAATTCCGACAAACCGGACAAGAACCATTAAGCTTCAACCAAGCATCGATACAACAGAGATGGAAGTAGTGTCTACACTCAGGCATCATCCTCAACATCTCCGCATCCTTATACTCACAGAGACAGATAGAGCAGACACAATTAGCTCCAGCCATGGATTTATCTCTGGAGAAAGGGAATTTAGGGTAAGAGTTAATAACGGTCTGGTCAAGACCCACAACCCCGTTGTCATCGTCGCGATCTGGAGCGGCGTCGTCCTCAGCAACGAAAATGATCTGGGGGAGAATGATGCCGGCGTCGGAGCGGGAAGAAGGAGGGGGAGGGCGGCGGAGGTGGCGGGAACGGGATGCGCGACAGCAGACGTAGAAAGCGAGGAGAAGGGCGGAGAGGAGGACGAGGAAGGCGAGTGCTATGGCAATGGAGTAGCCGAGGCCGATCCTGGAGAAGGAATAAGTGGAAGAAGGGGAGGACATGGAGAATGA

Protein sequence

MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNENDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEGISGRRGGHGE*
Homology
[Close]
BLAST of Csa3G121040 vs. TrEMBL
Match: A0A0A0L8R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 2.5e-105
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 

Query: 1   MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH 60
           MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH
Sbjct: 1   MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH 60

Query: 61  PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE 120
           PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE
Sbjct: 61  PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE 120

Query: 121 NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG 180
           NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG
Sbjct: 121 NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG 180

Query: 181 ISGRRGGHGE 191
           ISGRRGGHGE
Sbjct: 181 ISGRRGGHGE 190

[Close]
BLAST of Csa3G121040 vs. TrEMBL
Match: A0A0Q3GED4_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 68/202 (33.66%), Postives = 94/202 (46.53%), Query Frame = 1 

Query: 4   SSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRT----RTIKLQPSIDTTEMEVVSTLRH 63
           ++PS I  V+RE + L +R R+R  + R    R+    R    QP ++  ++E V  L H
Sbjct: 6   AAPS-IGGVVRERDELRERRRERRGDGRGDGGRSAHGARPAPAQPGVEAHDVEPVPALGH 65

Query: 64  HPQHLRILILTETDRADTIS-SSHGFISGEREFRVRVNNGLVKTHNPVVI-----VAIWS 123
             QHL + +L E DRA  +     G   GE    VR + G V+            V +  
Sbjct: 66  QTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGRGRRGVGVGG 125

Query: 124 GVVLSNENDLGEND---AGVGAGRRRGR--AAEVAGTGCATADVESEEKGGEEDEEGECY 183
              L +E    + D   AG G GR   R  AA         A+V  EE+GG+E EE E  
Sbjct: 126 LGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGGKEHEEAERD 185

Query: 184 GNGVAEADPGEGISGRRGGHGE 191
           G+GVAEA+ GE      GGHG+
Sbjct: 186 GDGVAEAERGERGEDGSGGHGD 206

[Close]
BLAST of Csa3G121040 vs. TrEMBL
Match: A0A0Q3G447_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g19207 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-09
Identity = 61/173 (35.26%), Postives = 79/173 (45.66%), Query Frame = 1 

Query: 43  QPSIDTTEMEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVK- 102
           QP ++  E+E V+ L HH  HL + +L E DRA  +        GE       ++G V+ 
Sbjct: 53  QPGVEAHEVERVAALGHHALHLALPVLAEADRAGGLGVGPRGGPGEGRLGEGGDHGGVEP 112

Query: 103 --------THNPVVIVAIWSGVVLSNENDLGEND-----AGVGAGRRRGRA----AEVAG 162
                   T  P      W GVVL +E++ G  D     AG G GR   R     A    
Sbjct: 113 DGRGRRRGTRAPGG--GAW-GVVLRDEDEAGHGDGDVARAGGGGGRVAPRVDRPLARRRP 172

Query: 163 TGCATADVESEEKGGEEDEEGECYGNGVAEADPGE-------GISGRRGGHGE 191
              A A+V  EE+G EEDEE E  G+GVAE + GE       G+ G  GG GE
Sbjct: 173 HAAAEAEVGGEEEGREEDEEAERDGDGVAEPERGERVDERHSGVGGGGGGGGE 222

[Close]
BLAST of Csa3G121040 vs. NCBI nr
Match: gi|700201343|gb|KGN56476.1| (hypothetical protein Csa_3G121040 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 3.6e-105
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 

Query: 1   MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH 60
           MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH
Sbjct: 1   MNESSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHH 60

Query: 61  PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE 120
           PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE
Sbjct: 61  PQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGVVLSNE 120

Query: 121 NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG 180
           NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG
Sbjct: 121 NDLGENDAGVGAGRRRGRAAEVAGTGCATADVESEEKGGEEDEEGECYGNGVAEADPGEG 180

Query: 181 ISGRRGGHGE 191
           ISGRRGGHGE
Sbjct: 181 ISGRRGGHGE 190

[Close]
BLAST of Csa3G121040 vs. NCBI nr
Match: gi|992273294|gb|KXG33318.1| (hypothetical protein SORBI_003G288400 [Sorghum bicolor])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 68/198 (34.34%), Postives = 93/198 (46.97%), Query Frame = 1 

Query: 8   PIRHVLREWNNLLKRSRKRSW----EWRIPTNRTRTIKLQPSIDTTEMEVVSTLRHHPQH 67
           P+  VLRE + L +R R+R      + R P +  R    QP ++  ++E V  L HH QH
Sbjct: 11  PVGGVLRERDELGERRRERRGIGRRDGRGPADGARRAPAQPGVEARDVEAVPALGHHAQH 70

Query: 68  LRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVAIWSGV-------- 127
           L + +L E D A  +       +GE +  V  + G V+            GV        
Sbjct: 71  LAVPVLAEADGAHGVRLRGP--AGEGDLGVGRDGGGVEPDGGAGRRGGGGGVGGVVGGLG 130

Query: 128 VLSNENDLGENDAGV-GAGRR----RGRAAEVAGTGCATADVESEEKGGEEDEEGECYGN 187
            L +E    + D  V GAG R     G     A    A A+VES+++GGE+DEE E  G+
Sbjct: 131 PLRDEEHARDGDGEVAGAGGRGDRFTGPVVPAAAAATAEAEVESQQEGGEQDEEAERDGD 190

[Close]
BLAST of Csa3G121040 vs. NCBI nr
Match: gi|944074132|gb|KQK09616.1| (hypothetical protein BRADI_2g49151 [Brachypodium distachyon])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 68/202 (33.66%), Postives = 94/202 (46.53%), Query Frame = 1 

Query: 4   SSPSPIRHVLREWNNLLKRSRKRSWEWRIPTNRT----RTIKLQPSIDTTEMEVVSTLRH 63
           ++PS I  V+RE + L +R R+R  + R    R+    R    QP ++  ++E V  L H
Sbjct: 6   AAPS-IGGVVRERDELRERRRERRGDGRGDGGRSAHGARPAPAQPGVEAHDVEPVPALGH 65

Query: 64  HPQHLRILILTETDRADTIS-SSHGFISGEREFRVRVNNGLVKTHNPVVI-----VAIWS 123
             QHL + +L E DRA  +     G   GE    VR + G V+            V +  
Sbjct: 66  QTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGRGRRGVGVGG 125

Query: 124 GVVLSNENDLGEND---AGVGAGRRRGR--AAEVAGTGCATADVESEEKGGEEDEEGECY 183
              L +E    + D   AG G GR   R  AA         A+V  EE+GG+E EE E  
Sbjct: 126 LGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGGKEHEEAERD 185

Query: 184 GNGVAEADPGEGISGRRGGHGE 191
           G+GVAEA+ GE      GGHG+
Sbjct: 186 GDGVAEAERGERGEDGSGGHGD 206

[Close]
BLAST of Csa3G121040 vs. NCBI nr
Match: gi|944069801|gb|KQK05285.1| (hypothetical protein BRADI_2g19207 [Brachypodium distachyon])

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-09
Identity = 61/173 (35.26%), Postives = 79/173 (45.66%), Query Frame = 1 

Query: 43  QPSIDTTEMEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVK- 102
           QP ++  E+E V+ L HH  HL + +L E DRA  +        GE       ++G V+ 
Sbjct: 53  QPGVEAHEVERVAALGHHALHLALPVLAEADRAGGLGVGPRGGPGEGRLGEGGDHGGVEP 112

Query: 103 --------THNPVVIVAIWSGVVLSNENDLGEND-----AGVGAGRRRGRA----AEVAG 162
                   T  P      W GVVL +E++ G  D     AG G GR   R     A    
Sbjct: 113 DGRGRRRGTRAPGG--GAW-GVVLRDEDEAGHGDGDVARAGGGGGRVAPRVDRPLARRRP 172

Query: 163 TGCATADVESEEKGGEEDEEGECYGNGVAEADPGE-------GISGRRGGHGE 191
              A A+V  EE+G EEDEE E  G+GVAE + GE       G+ G  GG GE
Sbjct: 173 HAAAEAEVGGEEEGREEDEEAERDGDGVAEPERGERVDERHSGVGGGGGGGGE 222

The following BLAST results are available for this feature:
BLAST of Csa3G121040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8R4_CUCSA2.5e-105100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1[more]
A0A0Q3GED4_BRADI1.4e-1033.66Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1[more]
A0A0Q3G447_BRADI4.3e-0935.26Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g19207 PE=4 SV=1[more]
BLAST of Csa3G121040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201343|gb|KGN56476.1|3.6e-105100.00hypothetical protein Csa_3G121040 [Cucumis sativus][more]
gi|992273294|gb|KXG33318.1|1.2e-1234.34hypothetical protein SORBI_003G288400 [Sorghum bicolor][more]
gi|944074132|gb|KQK09616.1|1.9e-1033.66hypothetical protein BRADI_2g49151 [Brachypodium distachyon][more]
gi|944069801|gb|KQK05285.1|6.2e-0935.26hypothetical protein BRADI_2g19207 [Brachypodium distachyon][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU120262cucumber EST collection version 3.0transcribed_cluster
CU178183cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G121040.1Csa3G121040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU120262CU120262transcribed_cluster
CU178183CU178183transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G121040Lsi05G020760Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G121040CmaCh14G020700Cucurbita maxima (Rimu)cmacuB253
Csa3G121040Cp4.1LG03g16500Cucurbita pepo (Zucchini)cpecuB609
Csa3G121040Cp4.1LG08g01170Cucurbita pepo (Zucchini)cpecuB862
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G121040Watermelon (97103) v2cuwmbB204
Csa3G121040Watermelon (97103) v2cuwmbB173
Csa3G121040Watermelon (97103) v2cuwmbB176
Csa3G121040Watermelon (97103) v2cuwmbB224
Csa3G121040Watermelon (97103) v2cuwmbB229
Csa3G121040Cucumber (Chinese Long) v2cucuB093
Csa3G121040Cucumber (Chinese Long) v2cucuB095
Csa3G121040Cucumber (Chinese Long) v2cucuB097
Csa3G121040Cucumber (Gy14) v1cgycuB128
Csa3G121040Cucumber (Gy14) v1cgycuB191
Csa3G121040Cucumber (Gy14) v1cgycuB307
Csa3G121040Cucumber (Gy14) v1cgycuB366
Csa3G121040Cucumber (Gy14) v1cgycuB431
Csa3G121040Cucurbita maxima (Rimu)cmacuB001
Csa3G121040Cucurbita maxima (Rimu)cmacuB288
Csa3G121040Cucurbita maxima (Rimu)cmacuB599
Csa3G121040Cucurbita maxima (Rimu)cmacuB829
Csa3G121040Cucurbita moschata (Rifu)cmocuB239
Csa3G121040Cucurbita moschata (Rifu)cmocuB271
Csa3G121040Cucurbita moschata (Rifu)cmocuB275
Csa3G121040Cucurbita moschata (Rifu)cmocuB593
Csa3G121040Cucurbita moschata (Rifu)cmocuB806
Csa3G121040Melon (DHL92) v3.5.1cumeB175
Csa3G121040Melon (DHL92) v3.5.1cumeB176
Csa3G121040Melon (DHL92) v3.5.1cumeB183
Csa3G121040Melon (DHL92) v3.5.1cumeB236
Csa3G121040Melon (DHL92) v3.5.1cumeB254
Csa3G121040Melon (DHL92) v3.5.1cumeB257
Csa3G121040Watermelon (Charleston Gray)cuwcgB206
Csa3G121040Watermelon (Charleston Gray)cuwcgB204
Csa3G121040Watermelon (Charleston Gray)cuwcgB222
Csa3G121040Watermelon (Charleston Gray)cuwcgB238
Csa3G121040Watermelon (Charleston Gray)cuwcgB243
Csa3G121040Watermelon (97103) v1cuwmB233
Csa3G121040Watermelon (97103) v1cuwmB258
Csa3G121040Watermelon (97103) v1cuwmB252
Csa3G121040Watermelon (97103) v1cuwmB260
Csa3G121040Cucurbita pepo (Zucchini)cpecuB038
Csa3G121040Cucurbita pepo (Zucchini)cpecuB168
Csa3G121040Cucurbita pepo (Zucchini)cpecuB720
Csa3G121040Bottle gourd (USVL1VR-Ls)culsiB151
Csa3G121040Bottle gourd (USVL1VR-Ls)culsiB153
Csa3G121040Bottle gourd (USVL1VR-Ls)culsiB158
Csa3G121040Cucumber (Gy14) v2cgybcuB109
Csa3G121040Cucumber (Gy14) v2cgybcuB163
Csa3G121040Cucumber (Gy14) v2cgybcuB206
Csa3G121040Cucumber (Gy14) v2cgybcuB210
Csa3G121040Cucumber (Gy14) v2cgybcuB267
Csa3G121040Melon (DHL92) v3.6.1cumedB157
Csa3G121040Melon (DHL92) v3.6.1cumedB158
Csa3G121040Melon (DHL92) v3.6.1cumedB169
Csa3G121040Melon (DHL92) v3.6.1cumedB223
Csa3G121040Melon (DHL92) v3.6.1cumedB245
Csa3G121040Melon (DHL92) v3.6.1cumedB246
Csa3G121040Silver-seed gourdcarcuB0522
Csa3G121040Silver-seed gourdcarcuB0629
Csa3G121040Silver-seed gourdcarcuB1007